Wall clock time and date at job start Wed Apr 1 2020 01:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34782 * 120.62939 * 126.41725 * 16 15 14 18 18 O 1.21280 * 119.99689 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99875 * 359.97365 * 17 16 15 20 20 C 1.53004 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.46986 * 179.97438 * 20 19 17 22 22 C 1.39673 * 127.05343 * 124.99765 * 21 20 19 23 23 N 1.31376 * 105.90313 * 179.97438 * 22 21 20 24 24 N 1.28599 * 108.71510 * 359.97438 * 23 22 21 25 25 C 1.46503 * 124.61789 * 179.97438 * 24 23 22 26 26 N 1.28597 * 110.76686 * 359.74679 * 24 23 22 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08999 * 109.50362 * 58.65963 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08997 * 109.70057 * 174.48791 * 15 14 13 39 39 H 1.09002 * 109.46539 * 299.99817 * 19 17 16 40 40 H 1.08997 * 109.47538 * 60.00150 * 19 17 16 41 41 H 1.09002 * 109.46850 * 299.99645 * 20 19 17 42 42 H 1.08997 * 109.47239 * 59.99502 * 20 19 17 43 43 H 1.08005 * 127.04798 * 359.95425 * 22 21 20 44 44 H 1.08998 * 109.47135 * 90.02439 * 25 24 23 45 45 H 1.08993 * 109.47440 * 210.02382 * 25 24 23 46 46 H 1.09004 * 109.47334 * 330.03258 * 25 24 23 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 3.7294 1.3878 -4.9468 11 1 3.2759 -0.6541 -6.1744 12 1 1.4488 0.8028 -5.5277 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0559 -2.7167 4.7024 18 8 0.7619 -2.0727 5.6871 19 6 0.6917 -4.1766 4.6202 20 6 -0.0374 -4.5931 5.8993 21 6 -0.4023 -6.0529 5.8169 22 6 -0.0757 -7.0551 6.7334 23 7 -0.5983 -8.1624 6.2574 24 7 -1.1971 -7.8940 5.1514 25 6 -1.9004 -8.8785 4.3254 26 7 -1.0985 -6.6427 4.8716 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 3.2335 -2.3998 -4.2459 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8755 -2.6711 0.3464 37 1 3.1571 -2.9723 2.4136 38 1 1.6361 -3.8908 2.5403 39 1 0.0407 -4.3408 3.7615 40 1 1.5980 -4.7716 4.5082 41 1 0.6132 -4.4287 6.7583 42 1 -0.9438 -3.9981 6.0110 43 1 0.4907 -6.9428 7.6461 44 1 -2.9436 -8.9347 4.6362 45 1 -1.8488 -8.5782 3.2790 46 1 -1.4322 -9.8554 4.4467 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317688283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:32 Heat of formation + Delta-G solvation = 74.936888 kcal Electronic energy + Delta-G solvation = -28972.791137 eV Core-core repulsion = 25037.712756 eV Total energy + Delta-G solvation = -3935.078381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.80456 -40.26033 -38.10442 -35.43853 -35.10149 -33.26600 -32.91752 -32.02777 -30.95602 -30.51881 -28.39543 -27.85811 -25.69619 -24.75800 -23.55960 -23.08030 -22.60653 -21.53748 -20.72998 -19.38860 -18.39695 -17.65127 -17.30493 -17.12591 -16.86200 -15.81633 -15.77265 -15.07045 -14.89189 -14.41723 -14.38941 -14.10904 -13.80389 -13.72212 -13.63843 -13.39034 -13.15318 -13.08147 -12.84654 -12.60092 -12.21146 -12.17245 -11.93841 -11.79915 -11.55948 -11.36483 -11.17502 -11.03537 -11.01802 -10.83463 -10.57843 -10.48806 -10.33018 -10.26354 -10.11110 -9.84249 -9.63309 -9.53276 -9.37082 -8.89984 -8.56557 -6.94789 -5.76904 -3.04448 1.54268 2.05382 2.14650 2.62357 3.02093 3.43453 3.48178 3.48727 3.79687 4.32181 4.57989 4.59017 4.63331 4.66984 4.83674 4.90549 4.93922 5.01598 5.05187 5.11098 5.15950 5.25375 5.35784 5.42872 5.54807 5.56590 5.57979 5.67375 5.77639 5.82891 5.85428 5.89896 5.99348 6.01346 6.02359 6.15878 6.23263 6.29740 6.32796 6.41145 6.50678 6.59568 6.69789 6.77944 6.93977 7.17291 7.42553 7.70361 8.06501 8.16217 8.42943 9.53802 10.12533 10.46994 11.46041 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002308 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.683975 B =12127.960211 C =13647.720273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.089 4.089 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.517 3.483 18 O -0.551 6.551 19 C -0.135 4.135 20 C -0.012 4.012 21 C 0.005 3.995 22 C -0.023 4.023 23 N -0.292 5.292 24 N -0.160 5.160 25 C 0.108 3.892 26 N -0.284 5.284 27 C 0.112 3.888 28 C -0.128 4.128 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.197 0.803 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -10.493 19.867 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.018 4.018 16 N -0.340 5.340 17 C 0.305 3.695 18 O -0.429 6.429 19 C -0.175 4.175 20 C -0.052 4.052 21 C -0.158 4.158 22 C -0.205 4.205 23 N -0.134 5.134 24 N -0.061 5.061 25 C -0.032 4.032 26 N -0.126 5.126 27 C -0.010 4.010 28 C -0.167 4.167 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.214 0.786 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.091 0.909 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.773 -11.014 19.431 23.340 hybrid contribution 0.595 0.630 -0.690 1.108 sum -6.178 -10.384 18.741 22.298 Atomic orbital electron populations 1.22530 0.99604 1.00811 0.99730 1.20193 0.91719 0.95181 0.86121 0.93663 1.42484 1.78170 1.10768 1.05233 1.19208 1.36312 0.93825 0.87317 0.91357 1.24708 1.02403 0.95977 0.97965 1.69639 1.51300 1.08603 1.28870 0.86292 0.77741 0.78602 0.83707 1.21339 1.21761 1.21375 1.21379 1.00315 0.94530 0.94655 1.21980 1.01287 0.96322 0.97078 1.21882 1.00456 0.94992 0.84435 1.48164 1.57018 1.11071 1.17741 1.20577 0.77043 0.89525 0.82342 1.90670 1.54665 1.65975 1.31619 1.21642 1.02468 0.93117 1.00281 1.19623 1.01524 0.86004 0.98017 1.23227 1.00770 0.98646 0.93177 1.24678 1.04756 0.88079 1.02964 1.74037 1.11549 1.27847 0.99937 1.47920 1.37700 1.05267 1.15211 1.22129 0.96797 0.89688 0.94600 1.74033 1.19306 0.93396 1.25895 1.21626 0.99691 0.80207 0.99511 1.22010 1.01513 0.99297 0.93857 0.93367 0.94400 0.93188 0.78215 0.93550 0.91095 0.91338 0.89613 0.91172 0.89973 0.88171 0.88863 0.88826 0.89253 0.78580 0.89339 0.87761 0.87972 0.91694 0.89315 0.90860 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.79 37.16 0.33 -2.63 16 2 C 0.18 3.36 2.72 -67.93 -0.18 3.18 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.37 5.04 -53.43 -0.27 -17.64 16 5 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -27.63 13.06 55.49 0.72 -26.91 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C -0.09 -1.36 2.14 -90.58 -0.19 -1.55 16 14 C -0.13 -1.82 4.81 -26.61 -0.13 -1.95 16 15 C 0.10 1.21 6.34 -3.71 -0.02 1.18 16 16 N -0.61 -7.37 2.97 -172.77 -0.51 -7.88 16 17 C 0.52 6.43 7.70 -10.98 -0.08 6.35 16 18 O -0.55 -8.39 15.40 5.56 0.09 -8.30 16 19 C -0.13 -1.31 4.03 -27.88 -0.11 -1.42 16 20 C -0.01 -0.11 5.10 -27.88 -0.14 -0.25 16 21 C 0.00 0.05 6.61 -82.25 -0.54 -0.50 16 22 C -0.02 -0.21 12.15 -17.21 -0.21 -0.42 16 23 N -0.29 -3.07 12.05 30.67 0.37 -2.70 16 24 N -0.16 -1.58 4.35 -16.64 -0.07 -1.65 16 25 C 0.11 0.55 11.57 59.85 0.69 1.24 16 26 N -0.28 -3.17 12.05 33.71 0.41 -2.76 16 27 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16 28 C -0.13 -1.65 4.96 -26.62 -0.13 -1.78 16 29 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 30 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.38 9.59 6.04 -40.82 -0.25 9.34 16 33 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.00 6.51 -51.93 -0.34 0.66 16 36 H 0.09 1.40 6.46 -51.93 -0.34 1.06 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 39 H 0.10 0.99 7.70 -51.93 -0.40 0.60 16 40 H 0.09 0.80 7.94 -51.93 -0.41 0.38 16 41 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -34.18 395.18 -7.37 -41.55 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.02 Total: 7.45 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.00 Total: -4.28 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.65 Total: -59.54 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.18 -7.37 -41.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317688283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.486 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds