Wall clock time and date at job start Wed Apr 1 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99599 * 2 1 4 4 N 1.34775 * 120.00109 * 180.02562 * 2 1 3 5 5 C 1.47080 * 120.88066 * 174.78042 * 4 2 1 6 6 C 1.53238 * 108.68145 * 128.69373 * 5 4 2 7 7 N 1.47328 * 109.11223 * 53.75315 * 6 5 4 8 8 C 1.38578 * 110.93454 * 172.83048 * 7 6 5 9 9 N 1.31213 * 126.47741 * 69.32895 * 8 7 6 10 10 N 1.28528 * 109.85976 * 179.97438 * 9 8 7 11 11 C 1.30291 * 110.05747 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.35098 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46962 * 90.02307 * 12 11 10 14 14 C 1.52999 * 109.47200 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47368 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99912 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00271 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47081 * 120.00012 * 19 17 15 22 22 H 1.48496 * 109.47113 * 240.00283 * 19 17 15 23 23 N 1.36458 * 126.47005 * 249.01940 * 8 7 6 24 24 C 1.46501 * 127.13505 * 0.03904 * 23 8 7 25 25 C 1.46905 * 111.36698 * 296.99571 * 7 6 5 26 26 H 1.09003 * 109.49308 * 303.16401 * 25 7 6 27 27 C 1.52990 * 109.49539 * 183.07932 * 25 7 6 28 28 C 1.47075 * 120.87998 * 354.75897 * 4 2 1 29 29 H 1.08998 * 109.46926 * 264.86171 * 1 2 3 30 30 H 1.09000 * 109.47604 * 24.86247 * 1 2 3 31 31 H 1.09000 * 109.47103 * 144.86423 * 1 2 3 32 32 H 1.08995 * 109.63194 * 248.50317 * 5 4 2 33 33 H 1.09005 * 109.62808 * 8.89232 * 5 4 2 34 34 H 1.08997 * 109.49268 * 173.89099 * 6 5 4 35 35 H 1.09006 * 109.49675 * 293.97012 * 6 5 4 36 36 H 1.08992 * 109.47028 * 210.01744 * 12 11 10 37 37 H 1.08998 * 109.46624 * 330.02719 * 12 11 10 38 38 H 1.09005 * 109.47170 * 300.00123 * 13 12 11 39 39 H 1.08997 * 109.47261 * 59.99940 * 13 12 11 40 40 H 1.09005 * 109.46948 * 300.00001 * 14 13 12 41 41 H 1.08997 * 109.47273 * 59.99689 * 14 13 12 42 42 H 0.96994 * 120.00287 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.47459 * 89.99579 * 24 23 8 44 44 H 1.09002 * 109.47216 * 209.99914 * 24 23 8 45 45 H 1.09005 * 109.47123 * 329.99108 * 24 23 8 46 46 H 1.09003 * 109.47364 * 305.18938 * 27 25 7 47 47 H 1.09003 * 109.47009 * 65.19447 * 27 25 7 48 48 H 1.08999 * 109.47598 * 185.19149 * 27 25 7 49 49 H 1.08998 * 109.63059 * 350.91712 * 28 4 2 50 50 H 1.09000 * 109.63198 * 111.30228 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6470 -1.1923 -0.1154 6 6 4.2133 -2.0561 1.0166 7 7 3.5612 -3.3769 0.9879 8 6 4.1563 -4.2427 1.8916 9 7 4.0982 -4.1653 3.2002 10 7 4.7637 -5.1318 3.7247 11 6 5.2819 -5.8766 2.7897 12 6 6.1303 -7.1053 2.9940 13 6 5.2308 -8.3413 3.0582 14 6 6.0920 -9.5886 3.2663 15 6 5.2060 -10.8060 3.3302 16 1 4.1356 -10.7005 3.2326 17 6 5.7619 -12.0543 3.5132 18 7 7.0653 -12.1827 3.6325 19 14 4.6635 -13.5632 3.5931 20 1 3.2454 -13.1522 3.4336 21 1 5.0319 -14.5019 2.5030 22 1 4.8401 -14.2350 4.9056 23 7 4.9086 -5.3401 1.5887 24 6 5.2490 -5.8379 0.2535 25 6 2.1176 -3.2666 1.2371 26 1 1.9504 -2.7687 2.1923 27 6 1.4976 -4.6648 1.2741 28 6 1.4698 -2.4495 0.1142 29 1 -0.3633 -0.0920 1.0235 30 1 -0.3634 0.9324 -0.4321 31 1 -0.3633 -0.8404 -0.5914 32 1 3.9317 -1.6174 -1.0778 33 1 4.0382 -0.1782 -0.0328 34 1 5.2885 -2.1732 0.8818 35 1 4.0168 -1.5748 1.9747 36 1 6.8285 -7.2069 2.1633 37 1 6.6864 -7.0117 3.9268 38 1 4.5324 -8.2397 3.8890 39 1 4.6746 -8.4348 2.1255 40 1 6.7906 -9.6904 2.4357 41 1 6.6479 -9.4949 4.1992 42 1 7.4563 -13.0609 3.7616 43 1 6.1808 -5.3802 -0.0782 44 1 5.3685 -6.9208 0.2890 45 1 4.4507 -5.5832 -0.4436 46 1 1.7430 -5.1956 0.3542 47 1 1.8931 -5.2152 2.1278 48 1 0.4149 -4.5798 1.3667 49 1 0.4218 -2.2670 0.3519 50 1 1.5422 -2.9939 -0.8273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338237948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:18 Heat of formation + Delta-G solvation = 46.556128 kcal Electronic energy + Delta-G solvation = -29475.322724 eV Core-core repulsion = 25539.013661 eV Total energy + Delta-G solvation = -3936.309063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.96565 -40.63857 -38.62210 -35.41017 -35.19123 -34.34447 -33.29638 -32.46113 -30.89381 -29.67510 -28.20290 -27.45089 -27.09585 -26.35273 -23.77364 -23.23567 -22.46551 -20.89360 -20.57842 -20.14731 -19.32951 -17.83343 -16.97206 -16.89579 -16.32868 -16.25527 -15.95748 -15.82880 -15.48116 -14.86743 -14.52555 -14.19892 -14.16280 -13.99045 -13.69900 -13.47210 -13.25009 -12.88004 -12.85010 -12.53682 -12.49709 -12.38151 -12.24133 -12.08693 -12.00669 -11.72668 -11.60684 -11.50931 -11.39594 -10.92465 -10.83405 -10.62851 -10.52268 -10.23398 -10.07023 -9.82347 -9.55283 -9.36987 -9.19294 -8.95916 -8.71400 -8.40212 -6.05076 -4.07444 1.75085 2.12349 2.21294 2.52755 2.92203 3.27795 3.35759 3.38785 3.39719 4.05569 4.21849 4.40961 4.42794 4.53971 4.58026 4.67923 4.71348 4.74095 4.80796 4.93414 4.94235 4.97056 5.04485 5.15827 5.19053 5.23442 5.30058 5.31253 5.37278 5.37572 5.46257 5.50653 5.69143 5.77999 5.82555 5.88644 5.94391 5.98376 6.08484 6.33047 6.55075 6.56144 6.70146 6.91866 6.98146 7.15140 7.60198 7.71969 7.72787 7.94010 8.36197 8.83441 8.99297 9.57018 11.06170 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002147 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.003144 B =13036.698008 C =13558.847262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.515 3.485 3 O -0.547 6.547 4 N -0.618 5.618 5 C 0.118 3.882 6 C 0.053 3.947 7 N -0.458 5.458 8 C 0.329 3.671 9 N -0.311 5.311 10 N -0.292 5.292 11 C 0.208 3.792 12 C -0.037 4.037 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.466 5.466 24 C 0.078 3.922 25 C 0.081 3.919 26 H 0.067 0.933 27 C -0.147 4.147 28 C 0.118 3.882 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.260 0.740 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 21.251 -12.381 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.304 3.696 3 O -0.424 6.424 4 N -0.352 5.352 5 C -0.005 4.005 6 C -0.075 4.075 7 N -0.185 5.185 8 C -0.028 4.028 9 N -0.155 5.155 10 N -0.132 5.132 11 C -0.059 4.059 12 C -0.077 4.077 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.158 5.158 24 C -0.065 4.065 25 C -0.028 4.028 26 H 0.085 0.915 27 C -0.206 4.206 28 C -0.006 4.006 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.354 22.027 -11.490 26.914 hybrid contribution -0.244 -1.262 -0.565 1.404 sum -10.598 20.764 -12.055 26.245 Atomic orbital electron populations 1.21961 0.91576 1.05155 1.04805 1.20855 0.90730 0.82829 0.75139 1.90722 1.70750 1.30982 1.49930 1.48237 1.07438 1.06248 1.73282 1.21705 0.79380 1.01192 0.98249 1.22620 0.99091 0.86520 0.99234 1.58725 1.03471 1.09854 1.46418 1.21997 0.99461 0.91315 0.89978 1.74545 1.18970 1.18077 1.03885 1.74080 1.11101 1.02473 1.25511 1.25379 1.01144 0.99291 0.80119 1.20387 0.95960 0.87395 1.03955 1.21651 0.98211 0.93369 1.00825 1.19109 0.94794 0.90214 0.97381 1.21244 0.93441 0.91626 1.49536 0.92688 1.25015 0.94977 0.99124 0.95319 1.69960 1.09940 1.23558 1.49912 0.86549 0.80863 0.83012 0.77664 1.19774 1.21030 1.20944 1.46229 1.39372 1.21312 1.08890 1.22054 1.02481 1.01622 0.80321 1.22053 0.84808 0.97624 0.98287 0.91519 1.21833 1.00821 0.94671 1.03225 1.21985 0.96299 0.83190 0.99083 0.88736 0.88775 0.89766 0.90398 0.88032 0.89211 0.92371 0.90289 0.88398 0.92449 0.93579 0.96474 0.96131 0.93007 0.90431 0.88612 0.88924 0.91563 0.91829 0.90980 0.88501 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 9.11 36.01 0.33 -0.51 16 2 C 0.52 4.57 7.81 -10.98 -0.09 4.48 16 3 O -0.55 -7.16 16.55 5.56 0.09 -7.06 16 4 N -0.62 -4.76 3.01 -172.46 -0.52 -5.28 16 5 C 0.12 0.93 6.60 -3.60 -0.02 0.90 16 6 C 0.05 0.49 5.59 -3.47 -0.02 0.47 16 7 N -0.46 -4.57 4.51 -166.31 -0.75 -5.32 16 8 C 0.33 4.38 4.88 -318.88 -1.56 2.82 16 9 N -0.31 -5.19 12.02 30.31 0.36 -4.82 16 10 N -0.29 -5.32 12.18 32.99 0.40 -4.92 16 11 C 0.21 3.32 7.32 -154.02 -1.13 2.19 16 12 C -0.04 -0.59 5.43 -27.88 -0.15 -0.75 16 13 C -0.10 -1.98 5.14 -26.73 -0.14 -2.11 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 N -0.47 -6.11 3.21 -121.46 -0.39 -6.50 16 24 C 0.08 0.72 10.92 59.85 0.65 1.37 16 25 C 0.08 0.70 2.48 -67.59 -0.17 0.53 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 C -0.15 -1.30 8.80 37.15 0.33 -0.97 16 28 C 0.12 0.68 5.57 -3.60 -0.02 0.66 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.22 6.84 -51.93 -0.35 -0.13 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.90 7.04 -51.93 -0.37 0.53 16 34 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 37 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.90 7.91 -51.93 -0.41 0.49 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.79 7.20 -51.93 -0.37 0.42 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.34 5.96 -51.93 -0.31 0.03 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -35.16 403.99 -10.06 -45.22 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -8.53 Total: -4.58 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.53 Total: -3.60 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.16 Total: -52.28 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.16 -10.06 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.777 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds