Wall clock time and date at job start Wed Apr 1 2020 01:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99599 * 2 1 4 4 N 1.34775 * 120.00109 * 180.02562 * 2 1 3 5 5 C 1.47080 * 120.88066 * 174.78042 * 4 2 1 6 6 C 1.53238 * 108.68145 * 128.69373 * 5 4 2 7 7 N 1.47328 * 109.11223 * 53.75315 * 6 5 4 8 8 C 1.38578 * 110.93454 * 172.83048 * 7 6 5 9 9 N 1.31213 * 126.47741 * 69.32895 * 8 7 6 10 10 N 1.28528 * 109.85976 * 179.97438 * 9 8 7 11 11 C 1.30291 * 110.05747 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.35098 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46962 * 90.02307 * 12 11 10 14 14 C 1.52999 * 109.47200 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47368 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99912 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00271 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47081 * 120.00012 * 19 17 15 22 22 H 1.48496 * 109.47113 * 240.00283 * 19 17 15 23 23 N 1.36458 * 126.47005 * 249.01940 * 8 7 6 24 24 C 1.46501 * 127.13505 * 0.03904 * 23 8 7 25 25 C 1.46905 * 111.36698 * 296.99571 * 7 6 5 26 26 H 1.09003 * 109.49308 * 303.16401 * 25 7 6 27 27 C 1.52990 * 109.49539 * 183.07932 * 25 7 6 28 28 C 1.47075 * 120.87998 * 354.75897 * 4 2 1 29 29 H 1.08998 * 109.46926 * 264.86171 * 1 2 3 30 30 H 1.09000 * 109.47604 * 24.86247 * 1 2 3 31 31 H 1.09000 * 109.47103 * 144.86423 * 1 2 3 32 32 H 1.08995 * 109.63194 * 248.50317 * 5 4 2 33 33 H 1.09005 * 109.62808 * 8.89232 * 5 4 2 34 34 H 1.08997 * 109.49268 * 173.89099 * 6 5 4 35 35 H 1.09006 * 109.49675 * 293.97012 * 6 5 4 36 36 H 1.08992 * 109.47028 * 210.01744 * 12 11 10 37 37 H 1.08998 * 109.46624 * 330.02719 * 12 11 10 38 38 H 1.09005 * 109.47170 * 300.00123 * 13 12 11 39 39 H 1.08997 * 109.47261 * 59.99940 * 13 12 11 40 40 H 1.09005 * 109.46948 * 300.00001 * 14 13 12 41 41 H 1.08997 * 109.47273 * 59.99689 * 14 13 12 42 42 H 0.96994 * 120.00287 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.47459 * 89.99579 * 24 23 8 44 44 H 1.09002 * 109.47216 * 209.99914 * 24 23 8 45 45 H 1.09005 * 109.47123 * 329.99108 * 24 23 8 46 46 H 1.09003 * 109.47364 * 305.18938 * 27 25 7 47 47 H 1.09003 * 109.47009 * 65.19447 * 27 25 7 48 48 H 1.08999 * 109.47598 * 185.19149 * 27 25 7 49 49 H 1.08998 * 109.63059 * 350.91712 * 28 4 2 50 50 H 1.09000 * 109.63198 * 111.30228 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6470 -1.1923 -0.1154 6 6 4.2133 -2.0561 1.0166 7 7 3.5612 -3.3769 0.9879 8 6 4.1563 -4.2427 1.8916 9 7 4.0982 -4.1653 3.2002 10 7 4.7637 -5.1318 3.7247 11 6 5.2819 -5.8766 2.7897 12 6 6.1303 -7.1053 2.9940 13 6 5.2308 -8.3413 3.0582 14 6 6.0920 -9.5886 3.2663 15 6 5.2060 -10.8060 3.3302 16 1 4.1356 -10.7005 3.2326 17 6 5.7619 -12.0543 3.5132 18 7 7.0653 -12.1827 3.6325 19 14 4.6635 -13.5632 3.5931 20 1 3.2454 -13.1522 3.4336 21 1 5.0319 -14.5019 2.5030 22 1 4.8401 -14.2350 4.9056 23 7 4.9086 -5.3401 1.5887 24 6 5.2490 -5.8379 0.2535 25 6 2.1176 -3.2666 1.2371 26 1 1.9504 -2.7687 2.1923 27 6 1.4976 -4.6648 1.2741 28 6 1.4698 -2.4495 0.1142 29 1 -0.3633 -0.0920 1.0235 30 1 -0.3634 0.9324 -0.4321 31 1 -0.3633 -0.8404 -0.5914 32 1 3.9317 -1.6174 -1.0778 33 1 4.0382 -0.1782 -0.0328 34 1 5.2885 -2.1732 0.8818 35 1 4.0168 -1.5748 1.9747 36 1 6.8285 -7.2069 2.1633 37 1 6.6864 -7.0117 3.9268 38 1 4.5324 -8.2397 3.8890 39 1 4.6746 -8.4348 2.1255 40 1 6.7906 -9.6904 2.4357 41 1 6.6479 -9.4949 4.1992 42 1 7.4563 -13.0609 3.7616 43 1 6.1808 -5.3802 -0.0782 44 1 5.3685 -6.9208 0.2890 45 1 4.4507 -5.5832 -0.4436 46 1 1.7430 -5.1956 0.3542 47 1 1.8931 -5.2152 2.1278 48 1 0.4149 -4.5798 1.3667 49 1 0.4218 -2.2670 0.3519 50 1 1.5422 -2.9939 -0.8273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338237948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:17 Heat of formation + Delta-G solvation = 24.764431 kcal Electronic energy + Delta-G solvation = -29476.267683 eV Core-core repulsion = 25539.013661 eV Total energy + Delta-G solvation = -3937.254022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.10303 -41.33222 -39.41819 -36.81086 -36.09316 -35.62790 -34.30518 -33.96374 -31.82668 -30.77831 -29.15957 -28.34670 -28.22636 -27.23129 -25.55873 -23.92731 -23.37657 -22.44523 -21.60984 -21.34551 -20.02364 -18.66025 -18.41421 -17.81705 -17.74291 -17.00834 -16.88507 -16.56589 -16.49973 -16.32168 -15.72938 -15.64833 -15.15717 -14.85491 -14.41318 -14.36461 -14.22764 -13.96476 -13.75227 -13.61304 -13.41327 -13.25223 -13.16004 -12.99368 -12.88924 -12.78219 -12.72398 -12.62975 -12.54609 -12.40708 -12.39832 -12.22110 -11.77202 -11.52126 -11.40888 -11.22905 -11.06896 -10.93233 -10.53775 -10.25115 -9.98561 -9.69692 -8.18758 -6.28625 0.65199 1.16742 1.40323 1.41941 1.53922 1.55644 1.70050 1.92561 2.42034 2.54187 3.14993 3.32604 3.46147 3.59627 3.74537 3.80364 3.92204 3.95167 4.06847 4.14669 4.17929 4.31246 4.36373 4.39618 4.40187 4.47444 4.48631 4.55303 4.61483 4.63820 4.68699 4.70878 4.75793 4.80303 4.98194 5.00113 5.04002 5.08478 5.09502 5.15193 5.18459 5.32139 5.46283 5.53331 5.57040 5.75294 5.86961 6.13202 6.26768 6.33784 6.87649 7.08537 7.40219 7.64839 8.92775 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.002147 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.003144 B =13036.698008 C =13558.847262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.598 6.598 4 N -0.618 5.618 5 C 0.123 3.877 6 C 0.058 3.942 7 N -0.446 5.446 8 C 0.348 3.652 9 N -0.349 5.349 10 N -0.330 5.330 11 C 0.200 3.800 12 C -0.024 4.024 13 C -0.083 4.083 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.281 1.281 23 N -0.461 5.461 24 C 0.070 3.930 25 C 0.079 3.921 26 H 0.044 0.956 27 C -0.141 4.141 28 C 0.124 3.876 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.007 0.993 41 H -0.005 1.005 42 H 0.263 0.737 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.021 0.979 48 H 0.098 0.902 49 H 0.128 0.872 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 21.054 -14.892 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.479 6.479 4 N -0.351 5.351 5 C 0.000 4.000 6 C -0.069 4.069 7 N -0.173 5.173 8 C -0.009 4.009 9 N -0.192 5.192 10 N -0.170 5.170 11 C -0.069 4.069 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.207 1.207 23 N -0.152 5.152 24 C -0.071 4.071 25 C -0.029 4.029 26 H 0.062 0.938 27 C -0.199 4.199 28 C 0.002 3.998 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.013 0.987 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.117 0.883 49 H 0.146 0.854 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.405 21.809 -14.018 28.741 hybrid contribution 0.392 -1.164 0.199 1.244 sum -12.014 20.645 -13.819 27.596 Atomic orbital electron populations 1.22003 0.88168 1.06524 1.06185 1.21640 0.92390 0.82170 0.73884 1.90701 1.72066 1.32795 1.52385 1.48363 1.07380 1.06876 1.72445 1.21628 0.79871 1.00172 0.98303 1.22586 0.99528 0.86098 0.98732 1.59041 1.04208 1.09521 1.44532 1.22308 0.97845 0.91141 0.89587 1.74460 1.20319 1.18604 1.05861 1.73974 1.12217 1.03561 1.27261 1.25116 1.01473 0.99287 0.81049 1.20150 0.95502 0.86024 1.04740 1.21330 0.97537 0.92824 1.00475 1.18994 0.94708 0.91788 0.95595 1.21673 0.93879 0.92997 1.49345 0.92669 1.25897 0.96382 1.02410 0.94919 1.70074 1.11656 1.24474 1.50774 0.85477 0.79204 0.79061 0.77779 1.18900 1.20120 1.20686 1.46388 1.38567 1.20814 1.09475 1.22400 1.04354 1.01783 0.78548 1.22163 0.83965 0.98095 0.98713 0.93805 1.21788 1.02345 0.93987 1.01756 1.22143 0.97204 0.81781 0.98700 0.87442 0.88804 0.86779 0.88386 0.89285 0.88841 0.94842 0.87917 0.89082 0.94211 0.92586 0.97460 0.98660 0.92774 0.88304 0.88618 0.86850 0.90531 0.95974 0.88323 0.85417 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.11 71.24 0.65 -0.47 16 2 C 0.51 8.19 7.81 87.66 0.68 8.88 16 3 O -0.60 -15.63 16.55 -3.04 -0.05 -15.68 16 4 N -0.62 -8.15 3.01 -817.94 -2.46 -10.62 16 5 C 0.12 1.77 6.60 86.35 0.57 2.34 16 6 C 0.06 1.04 5.59 86.30 0.48 1.52 16 7 N -0.45 -8.24 4.51 -680.09 -3.07 -11.31 16 8 C 0.35 9.10 4.88 260.11 1.27 10.37 16 9 N -0.35 -11.95 12.02 -58.00 -0.70 -12.65 16 10 N -0.33 -12.40 12.18 -49.54 -0.60 -13.00 16 11 C 0.20 6.38 7.32 137.64 1.01 7.38 16 12 C -0.02 -0.78 5.43 29.85 0.16 -0.62 16 13 C -0.08 -3.24 5.14 30.59 0.16 -3.09 16 14 C 0.03 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 16 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 19 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 N -0.46 -11.58 3.21 -538.18 -1.73 -13.31 16 24 C 0.07 1.11 10.92 127.77 1.40 2.51 16 25 C 0.08 1.22 2.48 44.99 0.11 1.33 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 C -0.14 -2.18 8.80 71.98 0.63 -1.55 16 28 C 0.12 0.99 5.57 86.35 0.48 1.47 16 29 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.06 6.84 -2.39 -0.02 0.04 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.56 7.04 -2.38 -0.02 1.54 16 34 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.10 2.77 7.95 -2.39 -0.02 2.75 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 38 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.57 7.91 -2.39 -0.02 1.55 16 45 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.02 0.53 7.20 -2.39 -0.02 0.51 16 48 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.13 0.29 5.96 -2.39 -0.01 0.27 16 50 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -79.88 403.99 3.07 -76.82 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.91 Total: 6.58 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 8.45 Total: 2.40 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -8.27 Total: -115.57 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.05 Total: -15.68 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -79.88 3.07 -76.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.582 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds