Wall clock time and date at job start Wed Apr 1 2020 01:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00573 * 2 1 4 4 N 1.34786 * 120.00093 * 179.97438 * 2 1 3 5 5 C 1.47075 * 120.87761 * 0.02562 * 4 2 1 6 6 C 1.53239 * 108.51974 * 231.20588 * 5 4 2 7 7 N 1.46898 * 109.34234 * 306.17411 * 6 5 4 8 8 C 1.38580 * 111.00235 * 187.25391 * 7 6 5 9 9 N 1.31218 * 126.47242 * 295.79438 * 8 7 6 10 10 N 1.28531 * 109.85829 * 180.02562 * 9 8 7 11 11 C 1.30290 * 110.05523 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.34731 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47232 * 90.02829 * 12 11 10 14 14 C 1.52992 * 109.47379 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00214 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99952 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47285 * 89.99711 * 19 17 15 21 21 H 1.48499 * 109.47122 * 209.99725 * 19 17 15 22 22 H 1.48504 * 109.46910 * 329.99738 * 19 17 15 23 23 N 1.36459 * 126.47396 * 115.79302 * 8 7 6 24 24 C 1.46502 * 127.13439 * 0.02562 * 23 8 7 25 25 C 1.46895 * 111.27145 * 63.09799 * 7 6 5 26 26 H 1.09006 * 109.48991 * 56.86176 * 25 7 6 27 27 C 1.52997 * 109.49377 * 176.93540 * 25 7 6 28 28 C 1.47071 * 120.88168 * 180.02562 * 4 2 1 29 29 H 1.08992 * 109.47482 * 270.00268 * 1 2 3 30 30 H 1.08997 * 109.47106 * 30.00338 * 1 2 3 31 31 H 1.09006 * 109.47082 * 149.99834 * 1 2 3 32 32 H 1.08999 * 109.62871 * 111.50002 * 5 4 2 33 33 H 1.09001 * 109.62902 * 350.91389 * 5 4 2 34 34 H 1.09004 * 109.49579 * 186.20848 * 6 5 4 35 35 H 1.09008 * 109.49368 * 66.13231 * 6 5 4 36 36 H 1.09002 * 109.47212 * 210.02673 * 12 11 10 37 37 H 1.08998 * 109.47054 * 330.03122 * 12 11 10 38 38 H 1.09000 * 109.46884 * 300.00577 * 13 12 11 39 39 H 1.09006 * 109.46644 * 60.00016 * 13 12 11 40 40 H 1.09000 * 109.47576 * 300.00143 * 14 13 12 41 41 H 1.09000 * 109.47082 * 59.99473 * 14 13 12 42 42 H 0.96994 * 120.00362 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47028 * 270.02368 * 24 23 8 44 44 H 1.08997 * 109.47055 * 30.02466 * 24 23 8 45 45 H 1.09005 * 109.47085 * 150.02448 * 24 23 8 46 46 H 1.08999 * 109.46990 * 54.22547 * 27 25 7 47 47 H 1.09001 * 109.47049 * 174.22148 * 27 25 7 48 48 H 1.08999 * 109.47644 * 294.22340 * 27 25 7 49 49 H 1.09001 * 109.62966 * 248.50096 * 28 4 2 50 50 H 1.09007 * 109.62981 * 9.08351 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4651 -2.4521 0.0005 6 6 2.0231 -3.3201 1.1334 7 7 3.4820 -3.4217 0.9951 8 6 4.0050 -4.3284 1.9033 9 7 3.9863 -4.2215 3.2110 10 7 4.5607 -5.2421 3.7408 11 6 4.9760 -6.0541 2.8103 12 6 5.6973 -7.3603 3.0214 13 6 4.6765 -8.4946 3.1317 14 6 5.4088 -9.8206 3.3467 15 6 4.4034 -10.9379 3.4547 16 1 3.3477 -10.7238 3.3772 17 6 4.8313 -12.2337 3.6523 18 7 6.1169 -12.4946 3.7461 19 14 3.5850 -13.6188 3.7854 20 1 3.3183 -14.1762 2.4351 21 1 4.1246 -14.6873 4.6643 22 1 2.3215 -13.0939 4.3628 23 7 4.6368 -5.5010 1.6066 24 6 4.8982 -6.0524 0.2748 25 6 4.1234 -2.1076 1.1344 26 1 3.8507 -1.6697 2.0947 27 6 5.6428 -2.2705 1.0602 28 6 3.6514 -1.1899 0.0011 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6160 -2.9553 -0.9545 33 1 0.4012 -2.2786 0.1622 34 1 1.5824 -4.3156 1.0798 35 1 1.7796 -2.8654 2.0938 36 1 6.3609 -7.5494 2.1776 37 1 6.2827 -7.3078 3.9394 38 1 4.0129 -8.3054 3.9754 39 1 4.0911 -8.5470 2.2137 40 1 6.0727 -10.0100 2.5032 41 1 5.9940 -9.7678 4.2648 42 1 6.4179 -13.4061 3.8848 43 1 4.0613 -6.6813 -0.0288 44 1 5.0177 -5.2373 -0.4389 45 1 5.8102 -6.6489 0.3011 46 1 5.9071 -2.8000 0.1448 47 1 6.1141 -1.2877 1.0603 48 1 5.9898 -2.8400 1.9224 49 1 4.0121 -1.5719 -0.9539 50 1 4.0331 -0.1817 0.1631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338237970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:22 Heat of formation + Delta-G solvation = 47.891213 kcal Electronic energy + Delta-G solvation = -29424.383113 eV Core-core repulsion = 25488.131943 eV Total energy + Delta-G solvation = -3936.251170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.97114 -40.65136 -38.62009 -35.43898 -35.22752 -34.38758 -33.27655 -32.40884 -30.61114 -29.95412 -28.51599 -27.42000 -26.95514 -26.14404 -23.78199 -23.46352 -22.40450 -20.90146 -20.54036 -20.12504 -19.32110 -17.87438 -16.98089 -16.91257 -16.34068 -16.22346 -15.96102 -15.86036 -15.49193 -14.82855 -14.55076 -14.19501 -14.15139 -14.01046 -13.72119 -13.52018 -13.31228 -12.91039 -12.82337 -12.61789 -12.43851 -12.37778 -12.26201 -12.06559 -11.88331 -11.78852 -11.59227 -11.50086 -11.39863 -10.90364 -10.83930 -10.63928 -10.52814 -10.22984 -10.07051 -9.81625 -9.54633 -9.36775 -9.20879 -8.94672 -8.73984 -8.39633 -6.04739 -4.07119 1.75041 2.12501 2.21903 2.52672 2.91955 3.28586 3.35513 3.38824 3.39433 4.05404 4.26934 4.36844 4.41503 4.53351 4.58118 4.65598 4.67731 4.75531 4.78519 4.84079 4.96536 5.04248 5.06854 5.14061 5.15868 5.26372 5.31424 5.33723 5.34045 5.37552 5.45289 5.47086 5.67928 5.77178 5.79404 5.85977 5.94973 6.00322 6.06945 6.33821 6.54764 6.56626 6.70414 6.91934 6.98469 7.14957 7.60178 7.72461 7.73136 7.94212 8.36518 8.83067 8.99314 9.57178 11.06457 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002142 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.329711 B =13066.409120 C =13700.587941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.515 3.485 3 O -0.547 6.547 4 N -0.617 5.617 5 C 0.112 3.888 6 C 0.051 3.949 7 N -0.458 5.458 8 C 0.328 3.672 9 N -0.310 5.310 10 N -0.292 5.292 11 C 0.208 3.792 12 C -0.037 4.037 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.465 5.465 24 C 0.080 3.920 25 C 0.081 3.919 26 H 0.065 0.935 27 C -0.146 4.146 28 C 0.123 3.877 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 22.268 -12.782 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.304 3.696 3 O -0.424 6.424 4 N -0.352 5.352 5 C -0.012 4.012 6 C -0.077 4.077 7 N -0.184 5.184 8 C -0.028 4.028 9 N -0.154 5.154 10 N -0.132 5.132 11 C -0.059 4.059 12 C -0.077 4.077 13 C -0.140 4.140 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.157 5.157 24 C -0.063 4.063 25 C -0.028 4.028 26 H 0.083 0.917 27 C -0.204 4.204 28 C 0.000 4.000 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.909 23.104 -11.890 26.887 hybrid contribution -0.597 -1.350 -0.536 1.570 sum -7.505 21.754 -12.426 26.153 Atomic orbital electron populations 1.21973 0.91581 1.04988 1.05026 1.20851 0.90725 0.82848 0.75169 1.90721 1.70708 1.30979 1.50015 1.48258 1.07038 1.06131 1.73725 1.21969 0.96823 0.83054 0.99318 1.22544 0.85115 1.01335 0.98720 1.58596 1.05240 1.07843 1.46767 1.21980 1.01824 0.88999 0.89971 1.74547 1.18801 1.18306 1.03779 1.74086 1.13657 0.99927 1.25508 1.25376 1.01344 0.99092 0.80107 1.20390 0.97679 0.85771 1.03810 1.21643 0.96972 0.94608 1.00818 1.19098 0.95597 0.89413 0.97332 1.21205 0.93149 0.92035 1.49526 0.92757 1.25014 0.95181 0.98892 0.95329 1.69950 1.13463 1.20092 1.49863 0.86600 0.81588 0.81916 0.77947 1.20703 1.21170 1.19879 1.46229 1.43400 1.17207 1.08913 1.22034 1.03554 1.00333 0.80386 1.22087 0.95127 0.86617 0.98929 0.91676 1.21809 0.93020 1.02739 1.02798 1.21781 0.79296 1.00650 0.98262 0.88622 0.88769 0.89800 0.89982 0.88262 0.88965 0.92223 0.90317 0.88411 0.92472 0.93572 0.96494 0.96138 0.92955 0.90025 0.89076 0.89030 0.91652 0.90970 0.92161 0.90430 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 9.44 36.00 0.34 -0.50 16 2 C 0.51 4.58 7.82 -10.98 -0.09 4.49 16 3 O -0.55 -7.17 16.55 5.56 0.09 -7.08 16 4 N -0.62 -4.76 3.01 -172.45 -0.52 -5.28 16 5 C 0.11 0.61 6.36 -3.60 -0.02 0.59 16 6 C 0.05 0.42 5.55 -3.70 -0.02 0.40 16 7 N -0.46 -4.55 4.51 -166.64 -0.75 -5.30 16 8 C 0.33 4.36 4.80 -318.87 -1.53 2.83 16 9 N -0.31 -5.18 12.18 30.32 0.37 -4.81 16 10 N -0.29 -5.31 12.18 32.99 0.40 -4.91 16 11 C 0.21 3.31 7.32 -154.02 -1.13 2.18 16 12 C -0.04 -0.59 5.59 -27.88 -0.16 -0.74 16 13 C -0.10 -1.98 5.13 -26.73 -0.14 -2.12 16 14 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.47 -6.07 3.21 -121.46 -0.39 -6.46 16 24 C 0.08 0.73 11.05 59.85 0.66 1.39 16 25 C 0.08 0.77 2.53 -67.58 -0.17 0.59 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.15 -1.32 8.79 37.16 0.33 -0.99 16 28 C 0.12 1.00 5.89 -3.59 -0.02 0.98 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.21 6.26 -51.93 -0.33 -0.11 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.31 5.64 -51.93 -0.29 0.01 16 34 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.08 1.10 7.27 -51.93 -0.38 0.72 16 37 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.77 7.25 -51.93 -0.38 0.39 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.10 0.93 7.06 -51.92 -0.37 0.56 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -35.28 402.63 -9.93 -45.21 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -8.42 Total: -4.59 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.50 Total: -3.63 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.15 Total: -52.22 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.28 -9.93 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.097 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds