Wall clock time and date at job start Wed Apr 1 2020 01:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00573 * 2 1 4 4 N 1.34786 * 120.00093 * 179.97438 * 2 1 3 5 5 C 1.47075 * 120.87761 * 0.02562 * 4 2 1 6 6 C 1.53239 * 108.51974 * 231.20588 * 5 4 2 7 7 N 1.46898 * 109.34234 * 306.17411 * 6 5 4 8 8 C 1.38580 * 111.00235 * 187.25391 * 7 6 5 9 9 N 1.31218 * 126.47242 * 295.79438 * 8 7 6 10 10 N 1.28531 * 109.85829 * 180.02562 * 9 8 7 11 11 C 1.30290 * 110.05523 * 359.97438 * 10 9 8 12 12 C 1.50701 * 126.34731 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47232 * 90.02829 * 12 11 10 14 14 C 1.52992 * 109.47379 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00214 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99992 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99952 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47285 * 89.99711 * 19 17 15 21 21 H 1.48499 * 109.47122 * 209.99725 * 19 17 15 22 22 H 1.48504 * 109.46910 * 329.99738 * 19 17 15 23 23 N 1.36459 * 126.47396 * 115.79302 * 8 7 6 24 24 C 1.46502 * 127.13439 * 0.02562 * 23 8 7 25 25 C 1.46895 * 111.27145 * 63.09799 * 7 6 5 26 26 H 1.09006 * 109.48991 * 56.86176 * 25 7 6 27 27 C 1.52997 * 109.49377 * 176.93540 * 25 7 6 28 28 C 1.47071 * 120.88168 * 180.02562 * 4 2 1 29 29 H 1.08992 * 109.47482 * 270.00268 * 1 2 3 30 30 H 1.08997 * 109.47106 * 30.00338 * 1 2 3 31 31 H 1.09006 * 109.47082 * 149.99834 * 1 2 3 32 32 H 1.08999 * 109.62871 * 111.50002 * 5 4 2 33 33 H 1.09001 * 109.62902 * 350.91389 * 5 4 2 34 34 H 1.09004 * 109.49579 * 186.20848 * 6 5 4 35 35 H 1.09008 * 109.49368 * 66.13231 * 6 5 4 36 36 H 1.09002 * 109.47212 * 210.02673 * 12 11 10 37 37 H 1.08998 * 109.47054 * 330.03122 * 12 11 10 38 38 H 1.09000 * 109.46884 * 300.00577 * 13 12 11 39 39 H 1.09006 * 109.46644 * 60.00016 * 13 12 11 40 40 H 1.09000 * 109.47576 * 300.00143 * 14 13 12 41 41 H 1.09000 * 109.47082 * 59.99473 * 14 13 12 42 42 H 0.96994 * 120.00362 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47028 * 270.02368 * 24 23 8 44 44 H 1.08997 * 109.47055 * 30.02466 * 24 23 8 45 45 H 1.09005 * 109.47085 * 150.02448 * 24 23 8 46 46 H 1.08999 * 109.46990 * 54.22547 * 27 25 7 47 47 H 1.09001 * 109.47049 * 174.22148 * 27 25 7 48 48 H 1.08999 * 109.47644 * 294.22340 * 27 25 7 49 49 H 1.09001 * 109.62966 * 248.50096 * 28 4 2 50 50 H 1.09007 * 109.62981 * 9.08351 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4651 -2.4521 0.0005 6 6 2.0231 -3.3201 1.1334 7 7 3.4820 -3.4217 0.9951 8 6 4.0050 -4.3284 1.9033 9 7 3.9863 -4.2215 3.2110 10 7 4.5607 -5.2421 3.7408 11 6 4.9760 -6.0541 2.8103 12 6 5.6973 -7.3603 3.0214 13 6 4.6765 -8.4946 3.1317 14 6 5.4088 -9.8206 3.3467 15 6 4.4034 -10.9379 3.4547 16 1 3.3477 -10.7238 3.3772 17 6 4.8313 -12.2337 3.6523 18 7 6.1169 -12.4946 3.7461 19 14 3.5850 -13.6188 3.7854 20 1 3.3183 -14.1762 2.4351 21 1 4.1246 -14.6873 4.6643 22 1 2.3215 -13.0939 4.3628 23 7 4.6368 -5.5010 1.6066 24 6 4.8982 -6.0524 0.2748 25 6 4.1234 -2.1076 1.1344 26 1 3.8507 -1.6697 2.0947 27 6 5.6428 -2.2705 1.0602 28 6 3.6514 -1.1899 0.0011 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6160 -2.9553 -0.9545 33 1 0.4012 -2.2786 0.1622 34 1 1.5824 -4.3156 1.0798 35 1 1.7796 -2.8654 2.0938 36 1 6.3609 -7.5494 2.1776 37 1 6.2827 -7.3078 3.9394 38 1 4.0129 -8.3054 3.9754 39 1 4.0911 -8.5470 2.2137 40 1 6.0727 -10.0100 2.5032 41 1 5.9940 -9.7678 4.2648 42 1 6.4179 -13.4061 3.8848 43 1 4.0613 -6.6813 -0.0288 44 1 5.0177 -5.2373 -0.4389 45 1 5.8102 -6.6489 0.3011 46 1 5.9071 -2.8000 0.1448 47 1 6.1141 -1.2877 1.0603 48 1 5.9898 -2.8400 1.9224 49 1 4.0121 -1.5719 -0.9539 50 1 4.0331 -0.1817 0.1631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338237970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:20 Heat of formation + Delta-G solvation = 25.974616 kcal Electronic energy + Delta-G solvation = -29425.333488 eV Core-core repulsion = 25488.131943 eV Total energy + Delta-G solvation = -3937.201545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.10304 -41.35039 -39.42216 -36.80049 -36.13201 -35.66213 -34.37873 -33.89048 -31.54690 -30.89103 -29.53305 -28.33961 -28.23114 -26.93186 -25.56206 -24.12640 -23.34025 -22.45219 -21.58654 -21.30215 -20.01362 -18.68379 -18.42196 -17.82281 -17.75950 -16.99465 -16.89527 -16.58303 -16.51001 -16.33261 -15.70300 -15.62272 -15.18350 -14.85086 -14.43048 -14.35249 -14.28717 -13.95299 -13.78630 -13.63137 -13.44052 -13.26971 -13.20741 -13.01282 -12.84621 -12.74996 -12.68667 -12.61962 -12.52171 -12.41885 -12.41719 -12.22812 -11.75037 -11.52068 -11.41165 -11.24510 -11.06974 -10.92858 -10.52742 -10.20985 -10.02173 -9.70262 -8.18355 -6.28235 0.65804 1.16933 1.40993 1.42484 1.53078 1.55864 1.70342 1.92441 2.42283 2.54844 3.15260 3.32809 3.45048 3.63834 3.70690 3.79192 3.90653 3.99666 4.05783 4.09588 4.17291 4.28286 4.31925 4.41889 4.44478 4.46309 4.51518 4.54547 4.61045 4.64176 4.66373 4.70425 4.73419 4.81131 4.93333 4.97701 5.06105 5.06818 5.10067 5.10678 5.18626 5.31448 5.47864 5.53546 5.55861 5.75893 5.87219 6.13615 6.27131 6.33743 6.87804 7.08512 7.40454 7.65065 8.92918 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002142 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.329711 B =13066.409120 C =13700.587941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.618 5.618 5 C 0.118 3.882 6 C 0.047 3.953 7 N -0.446 5.446 8 C 0.348 3.652 9 N -0.349 5.349 10 N -0.330 5.330 11 C 0.200 3.800 12 C -0.024 4.024 13 C -0.083 4.083 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.055 0.945 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.268 1.268 23 N -0.460 5.460 24 C 0.071 3.929 25 C 0.086 3.914 26 H 0.037 0.963 27 C -0.140 4.140 28 C 0.129 3.871 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.007 0.993 41 H -0.005 1.005 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.029 0.971 49 H 0.096 0.904 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 22.085 -15.305 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.479 6.479 4 N -0.350 5.350 5 C -0.004 4.004 6 C -0.080 4.080 7 N -0.173 5.173 8 C -0.009 4.009 9 N -0.193 5.193 10 N -0.170 5.170 11 C -0.069 4.069 12 C -0.064 4.064 13 C -0.122 4.122 14 C -0.010 4.010 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.193 1.193 23 N -0.151 5.151 24 C -0.070 4.070 25 C -0.022 4.022 26 H 0.055 0.945 27 C -0.198 4.198 28 C 0.006 3.994 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.013 0.987 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.048 0.952 49 H 0.114 0.886 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.715 22.899 -14.431 28.436 hybrid contribution -0.030 -1.252 0.228 1.273 sum -8.745 21.647 -14.203 27.327 Atomic orbital electron populations 1.22010 0.88217 1.06564 1.06127 1.21626 0.92364 0.82212 0.73941 1.90698 1.72008 1.32785 1.52449 1.48394 1.06913 1.06878 1.72864 1.22155 0.97974 0.81360 0.98891 1.22675 0.83935 1.02197 0.99223 1.58905 1.06219 1.07325 1.44831 1.22288 0.99934 0.89092 0.89569 1.74466 1.20420 1.18629 1.05775 1.73981 1.14816 1.00978 1.27264 1.25112 1.01796 0.98921 0.81046 1.20154 0.96831 0.84727 1.04680 1.21325 0.97006 0.93421 1.00427 1.18985 0.95047 0.91426 0.95584 1.21646 0.93768 0.93254 1.49348 0.92692 1.25897 0.97114 1.01628 0.94948 1.70067 1.15333 1.20797 1.50728 0.85529 0.79092 0.78557 0.78368 1.19483 1.20899 1.19280 1.46384 1.42469 1.16786 1.09483 1.22398 1.04434 1.01509 0.78677 1.22033 0.95502 0.86409 0.98287 0.94493 1.21768 0.92682 1.03282 1.02057 1.21676 0.80038 0.99500 0.98217 0.87580 0.88652 0.86817 0.87893 0.85183 0.88460 0.94153 0.87855 0.89104 0.94233 0.92591 0.97470 0.98662 0.92775 0.89057 0.86703 0.88049 0.90080 0.89646 0.95159 0.88573 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.44 71.23 0.67 -0.49 16 2 C 0.51 8.27 7.82 87.65 0.69 8.96 16 3 O -0.60 -15.67 16.55 -3.02 -0.05 -15.72 16 4 N -0.62 -8.25 3.01 -817.89 -2.46 -10.71 16 5 C 0.12 0.89 6.36 86.35 0.55 1.44 16 6 C 0.05 0.70 5.55 86.38 0.48 1.18 16 7 N -0.45 -8.17 4.51 -681.12 -3.07 -11.24 16 8 C 0.35 9.01 4.80 260.11 1.25 10.26 16 9 N -0.35 -11.92 12.18 -58.00 -0.71 -12.62 16 10 N -0.33 -12.34 12.18 -49.54 -0.60 -12.94 16 11 C 0.20 6.33 7.32 137.64 1.01 7.34 16 12 C -0.02 -0.77 5.59 29.85 0.17 -0.60 16 13 C -0.08 -3.24 5.13 30.59 0.16 -3.08 16 14 C 0.03 1.33 4.97 29.84 0.15 1.48 16 15 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.12 5.46 84.66 0.46 0.58 16 18 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 19 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 N -0.46 -11.38 3.21 -538.18 -1.73 -13.11 16 24 C 0.07 1.10 11.05 127.77 1.41 2.51 16 25 C 0.09 1.58 2.53 45.01 0.11 1.69 16 26 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 27 C -0.14 -2.43 8.79 71.98 0.63 -1.80 16 28 C 0.13 1.92 5.89 86.36 0.51 2.43 16 29 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.07 6.26 -2.38 -0.01 0.06 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.13 0.22 5.64 -2.39 -0.01 0.21 16 34 H 0.10 1.37 8.09 -2.38 -0.02 1.36 16 35 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.10 2.74 7.27 -2.39 -0.02 2.72 16 37 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.10 1.41 7.25 -2.38 -0.02 1.39 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.03 0.71 7.29 -2.39 -0.02 0.69 16 49 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 50 H 0.09 1.60 7.06 -2.38 -0.02 1.58 16 Total: -1.00 -79.65 402.63 3.09 -76.55 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.92 Total: 6.84 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 8.48 Total: 2.13 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -8.28 Total: -115.22 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.05 Total: -15.72 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.65 3.09 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.529 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds