Wall clock time and date at job start Tue Mar 31 2020 23:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.30821 * 126.43785 * 59.68968 * 4 2 1 6 6 N 1.28929 * 109.74021 * 179.97438 * 5 4 2 7 7 C 1.29722 * 109.42642 * 0.54680 * 6 5 4 8 8 N 1.34791 * 126.43940 * 240.00062 * 4 2 1 9 9 C 1.46212 * 128.60612 * 359.48481 * 8 4 2 10 10 C 1.53334 * 109.17519 * 161.72883 * 9 8 4 11 11 N 1.47077 * 109.24908 * 45.65310 * 10 9 8 12 12 C 1.34768 * 120.94459 * 116.47495 * 11 10 9 13 13 O 1.21288 * 119.99888 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00561 * 0.02562 * 12 11 10 15 15 H 1.09009 * 109.47007 * 39.99565 * 14 12 11 16 16 N 1.46902 * 109.47754 * 159.99878 * 14 12 11 17 17 C 1.53002 * 109.47164 * 280.00201 * 14 12 11 18 18 C 1.53003 * 109.46968 * 174.99335 * 17 14 12 19 19 C 1.50704 * 109.46588 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00245 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99794 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00013 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47157 * 119.99747 * 23 21 19 26 26 H 1.48499 * 109.47112 * 239.99146 * 23 21 19 27 27 C 1.47520 * 118.10781 * 296.45568 * 11 10 9 28 28 H 1.09003 * 109.95885 * 162.51326 * 27 11 10 29 29 C 1.53005 * 109.95591 * 283.69768 * 27 11 10 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 37 37 H 1.08996 * 109.52263 * 281.64158 * 9 8 4 38 38 H 1.08999 * 109.52229 * 41.82214 * 9 8 4 39 39 H 1.09006 * 109.50810 * 165.58339 * 10 9 8 40 40 H 1.09002 * 109.51182 * 285.71908 * 10 9 8 41 41 H 1.00894 * 110.99738 * 59.99749 * 16 14 12 42 42 H 1.00895 * 110.99980 * 183.95796 * 16 14 12 43 43 H 1.09000 * 109.47039 * 294.99504 * 17 14 12 44 44 H 1.08999 * 109.47054 * 54.99359 * 17 14 12 45 45 H 1.09000 * 109.47378 * 299.99961 * 18 17 14 46 46 H 1.09002 * 109.46623 * 60.00558 * 18 17 14 47 47 H 0.96996 * 119.99963 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.46753 * 60.00600 * 29 27 11 49 49 H 1.09007 * 109.46903 * 179.97438 * 29 27 11 50 50 H 1.08999 * 109.47175 * 300.00419 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7905 -0.3783 -2.4726 6 7 2.3788 -1.2059 -3.2671 7 6 3.0068 -2.1013 -2.5695 8 7 2.8104 -1.8107 -1.2582 9 6 3.3589 -2.5687 -0.1347 10 6 3.7810 -3.9594 -0.6236 11 7 4.5283 -3.8244 -1.8831 12 6 5.8226 -4.1915 -1.9638 13 8 6.4226 -4.0722 -3.0111 14 6 6.5243 -4.7501 -0.7528 15 1 5.8482 -5.4156 -0.2159 16 7 7.7138 -5.4998 -1.1784 17 6 6.9468 -3.6023 0.1665 18 6 7.5469 -4.1737 1.4528 19 6 7.9636 -3.0431 2.3579 20 1 7.8149 -2.0196 2.0471 21 6 8.5347 -3.3155 3.5830 22 7 8.7153 -4.5619 3.9617 23 14 9.0519 -1.9142 4.7046 24 1 8.7437 -0.6171 4.0506 25 1 8.3125 -2.0095 5.9890 26 1 10.5110 -2.0021 4.9659 27 6 3.8208 -3.2761 -3.0557 28 1 4.5413 -2.9457 -3.8041 29 6 2.8983 -4.3403 -3.6537 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 4.2259 -2.0458 0.2688 38 1 2.6001 -2.6703 0.6412 39 1 4.4147 -4.4322 0.1268 40 1 2.8945 -4.5713 -0.7902 41 1 8.3565 -4.9044 -1.6788 42 1 8.1659 -5.9384 -0.3902 43 1 7.6906 -2.9867 -0.3393 44 1 6.0765 -2.9933 0.4108 45 1 6.8031 -4.7893 1.9586 46 1 8.4173 -4.7826 1.2083 47 1 9.1167 -4.7535 4.8237 48 1 2.1680 -4.6495 -2.9061 49 1 2.3795 -3.9269 -4.5187 50 1 3.4900 -5.2022 -3.9620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343779126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:45 Heat of formation + Delta-G solvation = 31.513489 kcal Electronic energy + Delta-G solvation = -30499.843561 eV Core-core repulsion = 26562.882200 eV Total energy + Delta-G solvation = -3936.961361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.49892 -40.26979 -37.24342 -36.20179 -35.76836 -34.38266 -33.04842 -32.36067 -30.06325 -29.74612 -28.93595 -27.45470 -26.81032 -24.80435 -24.44949 -23.69457 -23.39319 -21.01824 -20.43113 -20.01888 -18.60801 -17.83655 -17.22640 -16.96581 -16.42598 -16.21394 -15.42870 -15.18284 -15.03731 -14.72861 -14.59725 -14.34626 -14.22241 -13.79996 -13.56193 -13.44413 -13.12829 -12.96801 -12.83942 -12.49003 -12.38983 -12.29281 -12.23082 -12.09871 -11.82473 -11.61574 -11.51820 -11.42083 -11.40775 -11.22484 -11.06400 -10.78009 -10.46413 -10.30555 -10.14171 -10.06283 -9.45594 -9.35108 -9.24362 -9.03449 -8.56988 -8.36559 -6.21198 -4.25050 1.64371 2.11702 2.56233 2.66550 2.73761 3.16918 3.26155 3.28921 3.83385 3.96932 4.05970 4.27749 4.37321 4.51117 4.56303 4.67354 4.77497 4.84911 4.87799 4.95781 5.02153 5.12388 5.15205 5.20003 5.24447 5.37077 5.37382 5.39131 5.43278 5.53132 5.55237 5.61407 5.65318 5.75622 5.86239 5.93266 5.95144 6.05210 6.08515 6.15591 6.32611 6.63433 6.67336 7.05615 7.34287 7.39346 7.45016 7.74165 7.75453 8.10472 8.16778 8.61231 8.80916 9.41004 10.89492 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003922 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.773777 B = 7138.180137 C = 9420.725495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.187 3.813 5 N -0.294 5.294 6 N -0.282 5.282 7 C 0.168 3.832 8 N -0.463 5.463 9 C 0.082 3.918 10 C 0.092 3.908 11 N -0.622 5.622 12 C 0.535 3.465 13 O -0.523 6.523 14 C 0.075 3.925 15 H 0.099 0.901 16 N -0.829 5.829 17 C -0.139 4.139 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.054 0.946 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.231 3.769 28 H 0.127 0.873 29 C -0.150 4.150 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.347 0.653 42 H 0.356 0.644 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 2.329 -6.204 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.080 4.080 5 N -0.134 5.134 6 N -0.121 5.121 7 C -0.101 4.101 8 N -0.153 5.153 9 C -0.042 4.042 10 C -0.032 4.032 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.396 6.396 14 C -0.040 4.040 15 H 0.117 0.883 16 N -0.362 5.362 17 C -0.179 4.179 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.126 3.874 28 H 0.145 0.855 29 C -0.209 4.209 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.261 2.573 -8.246 18.413 hybrid contribution 1.344 0.743 2.648 3.062 sum -14.917 3.316 -5.597 16.274 Atomic orbital electron populations 1.21796 0.92584 1.02320 1.03112 1.19615 0.96881 0.96000 0.90269 1.21803 1.01409 0.93743 1.03049 1.24699 0.96262 0.89062 0.98001 1.74428 1.20412 1.21022 0.97491 1.74028 1.10502 1.01958 1.25658 1.24793 1.03434 1.00821 0.81032 1.45915 1.38316 1.22869 1.08202 1.22559 1.00998 0.93141 0.87477 1.22126 0.98589 0.94875 0.87581 1.48375 1.11319 1.65423 1.10686 1.21000 0.79868 0.76202 0.90563 1.90668 1.64547 1.53309 1.31106 1.21533 0.94442 0.96531 0.91501 0.88294 1.58741 1.10598 1.36254 1.30605 1.22465 1.00841 0.96374 0.98234 1.19105 0.95889 0.96486 0.89683 1.21167 1.40807 0.92810 1.01642 0.92746 1.24991 0.95568 0.95540 0.97994 1.69945 1.43864 1.17828 1.21311 0.86555 0.78506 0.82446 0.80643 1.19781 1.20869 1.20852 1.19562 0.92407 0.87208 0.88264 0.85541 1.22049 0.99162 0.98278 1.01390 0.91223 0.92668 0.91348 0.89502 0.92449 0.91250 0.91303 0.87861 0.87269 0.85817 0.89598 0.83947 0.82779 0.92455 0.92833 0.96291 0.96256 0.92819 0.92339 0.90206 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 2 C -0.01 -0.06 3.31 -91.77 -0.30 -0.36 16 3 C -0.14 -1.26 9.18 37.16 0.34 -0.91 16 4 C 0.19 2.33 6.57 -155.37 -1.02 1.31 16 5 N -0.29 -4.48 12.23 32.71 0.40 -4.08 16 6 N -0.28 -4.48 12.21 32.79 0.40 -4.08 16 7 C 0.17 2.31 7.17 -155.30 -1.11 1.20 16 8 N -0.46 -5.59 3.11 -110.83 -0.34 -5.93 16 9 C 0.08 0.77 6.64 -4.02 -0.03 0.75 16 10 C 0.09 0.87 5.56 -3.55 -0.02 0.85 16 11 N -0.62 -7.67 2.63 -165.83 -0.44 -8.11 16 12 C 0.53 8.14 6.96 -10.99 -0.08 8.06 16 13 O -0.52 -9.57 15.79 5.55 0.09 -9.49 16 14 C 0.07 1.13 2.35 -68.86 -0.16 0.97 16 15 H 0.10 1.34 6.62 -51.92 -0.34 0.99 16 16 N -0.83 -13.02 8.94 -5.65 -0.05 -13.07 16 17 C -0.14 -2.44 4.52 -26.73 -0.12 -2.56 16 18 C 0.03 0.56 4.74 -27.88 -0.13 0.43 16 19 C -0.53 -13.42 9.11 -34.44 -0.31 -13.74 16 20 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 23 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.23 2.90 3.25 -68.39 -0.22 2.68 16 28 H 0.13 1.80 7.23 -51.93 -0.38 1.42 16 29 C -0.15 -1.51 9.44 37.16 0.35 -1.16 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.65 7.36 -51.93 -0.38 0.27 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.08 7.00 -51.93 -0.36 0.71 16 38 H 0.11 0.71 7.83 -51.93 -0.41 0.30 16 39 H 0.12 1.13 5.12 -51.93 -0.27 0.86 16 40 H 0.09 0.64 7.54 -51.93 -0.39 0.25 16 41 H 0.35 5.61 8.58 -39.29 -0.34 5.27 16 42 H 0.36 5.58 7.55 -39.29 -0.30 5.28 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.87 5.98 -51.93 -0.31 0.55 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -32.35 395.17 -8.84 -41.18 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.99 Total: 7.94 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.58 Total: -1.72 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.70 Total: -59.09 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.35 -8.84 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343779126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.698 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds