Wall clock time and date at job start Tue Mar 31 2020 23:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.30821 * 126.43785 * 59.68968 * 4 2 1 6 6 N 1.28929 * 109.74021 * 179.97438 * 5 4 2 7 7 C 1.29722 * 109.42642 * 0.54680 * 6 5 4 8 8 N 1.34791 * 126.43940 * 240.00062 * 4 2 1 9 9 C 1.46212 * 128.60612 * 359.48481 * 8 4 2 10 10 C 1.53334 * 109.17519 * 161.72883 * 9 8 4 11 11 N 1.47077 * 109.24908 * 45.65310 * 10 9 8 12 12 C 1.34768 * 120.94459 * 116.47495 * 11 10 9 13 13 O 1.21288 * 119.99888 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00561 * 0.02562 * 12 11 10 15 15 H 1.09009 * 109.47007 * 39.99565 * 14 12 11 16 16 N 1.46902 * 109.47754 * 159.99878 * 14 12 11 17 17 C 1.53002 * 109.47164 * 280.00201 * 14 12 11 18 18 C 1.53003 * 109.46968 * 174.99335 * 17 14 12 19 19 C 1.50704 * 109.46588 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00245 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99794 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00013 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47157 * 119.99747 * 23 21 19 26 26 H 1.48499 * 109.47112 * 239.99146 * 23 21 19 27 27 C 1.47520 * 118.10781 * 296.45568 * 11 10 9 28 28 H 1.09003 * 109.95885 * 162.51326 * 27 11 10 29 29 C 1.53005 * 109.95591 * 283.69768 * 27 11 10 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 37 37 H 1.08996 * 109.52263 * 281.64158 * 9 8 4 38 38 H 1.08999 * 109.52229 * 41.82214 * 9 8 4 39 39 H 1.09006 * 109.50810 * 165.58339 * 10 9 8 40 40 H 1.09002 * 109.51182 * 285.71908 * 10 9 8 41 41 H 1.00894 * 110.99738 * 59.99749 * 16 14 12 42 42 H 1.00895 * 110.99980 * 183.95796 * 16 14 12 43 43 H 1.09000 * 109.47039 * 294.99504 * 17 14 12 44 44 H 1.08999 * 109.47054 * 54.99359 * 17 14 12 45 45 H 1.09000 * 109.47378 * 299.99961 * 18 17 14 46 46 H 1.09002 * 109.46623 * 60.00558 * 18 17 14 47 47 H 0.96996 * 119.99963 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.46753 * 60.00600 * 29 27 11 49 49 H 1.09007 * 109.46903 * 179.97438 * 29 27 11 50 50 H 1.08999 * 109.47175 * 300.00419 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7905 -0.3783 -2.4726 6 7 2.3788 -1.2059 -3.2671 7 6 3.0068 -2.1013 -2.5695 8 7 2.8104 -1.8107 -1.2582 9 6 3.3589 -2.5687 -0.1347 10 6 3.7810 -3.9594 -0.6236 11 7 4.5283 -3.8244 -1.8831 12 6 5.8226 -4.1915 -1.9638 13 8 6.4226 -4.0722 -3.0111 14 6 6.5243 -4.7501 -0.7528 15 1 5.8482 -5.4156 -0.2159 16 7 7.7138 -5.4998 -1.1784 17 6 6.9468 -3.6023 0.1665 18 6 7.5469 -4.1737 1.4528 19 6 7.9636 -3.0431 2.3579 20 1 7.8149 -2.0196 2.0471 21 6 8.5347 -3.3155 3.5830 22 7 8.7153 -4.5619 3.9617 23 14 9.0519 -1.9142 4.7046 24 1 8.7437 -0.6171 4.0506 25 1 8.3125 -2.0095 5.9890 26 1 10.5110 -2.0021 4.9659 27 6 3.8208 -3.2761 -3.0557 28 1 4.5413 -2.9457 -3.8041 29 6 2.8983 -4.3403 -3.6537 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 4.2259 -2.0458 0.2688 38 1 2.6001 -2.6703 0.6412 39 1 4.4147 -4.4322 0.1268 40 1 2.8945 -4.5713 -0.7902 41 1 8.3565 -4.9044 -1.6788 42 1 8.1659 -5.9384 -0.3902 43 1 7.6906 -2.9867 -0.3393 44 1 6.0765 -2.9933 0.4108 45 1 6.8031 -4.7893 1.9586 46 1 8.4173 -4.7826 1.2083 47 1 9.1167 -4.7535 4.8237 48 1 2.1680 -4.6495 -2.9061 49 1 2.3795 -3.9269 -4.5187 50 1 3.4900 -5.2022 -3.9620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343779126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:44 Heat of formation + Delta-G solvation = 10.857662 kcal Electronic energy + Delta-G solvation = -30500.739265 eV Core-core repulsion = 26562.882200 eV Total energy + Delta-G solvation = -3937.857065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.49166 -41.42003 -38.31189 -37.29270 -36.87325 -35.31155 -34.87404 -33.37005 -31.70391 -30.67923 -29.88660 -28.25431 -28.09424 -26.19397 -25.37991 -24.67921 -24.52592 -22.44819 -21.59336 -20.91698 -19.66854 -19.00544 -18.33600 -18.20678 -17.83769 -17.22618 -16.55711 -16.40267 -16.22282 -16.06974 -15.63181 -15.51504 -15.11779 -14.98365 -14.78043 -14.41118 -14.23210 -14.03978 -13.92346 -13.77815 -13.47345 -13.26061 -13.12152 -13.00824 -12.95769 -12.88354 -12.66910 -12.51813 -12.41138 -12.38816 -12.21438 -12.12792 -11.84035 -11.74146 -11.42639 -11.27988 -11.17117 -10.80557 -10.54971 -10.27882 -10.05691 -9.68210 -8.20836 -6.29983 0.67987 1.19333 1.37845 1.38552 1.42659 1.51538 1.63195 1.69735 2.39967 2.88956 3.13984 3.15880 3.25824 3.35985 3.67648 3.71387 3.80696 3.89720 3.95336 4.03681 4.06300 4.09900 4.14056 4.25215 4.33769 4.39590 4.50700 4.58220 4.62662 4.67073 4.74943 4.78289 4.82775 4.90115 4.94180 4.94532 5.04693 5.06369 5.09591 5.20201 5.29273 5.37648 5.48248 5.66202 5.73001 5.81901 5.95351 6.16710 6.22282 6.44854 6.85465 6.93588 7.39465 7.58508 8.89684 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003922 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.773777 B = 7138.180137 C = 9420.725495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.195 3.805 5 N -0.330 5.330 6 N -0.317 5.317 7 C 0.164 3.836 8 N -0.462 5.462 9 C 0.077 3.923 10 C 0.086 3.914 11 N -0.614 5.614 12 C 0.536 3.464 13 O -0.560 6.560 14 C 0.083 3.917 15 H 0.122 0.878 16 N -0.830 5.830 17 C -0.122 4.122 18 C 0.033 3.967 19 C -0.540 4.540 20 H 0.052 0.948 21 C 0.012 3.988 22 N -0.923 5.923 23 Si 0.950 3.050 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.285 1.285 27 C 0.233 3.767 28 H 0.104 0.896 29 C -0.140 4.140 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.343 0.657 42 H 0.356 0.644 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.013 0.987 46 H 0.001 0.999 47 H 0.263 0.737 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.304 2.369 -4.431 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.074 4.074 5 N -0.169 5.169 6 N -0.156 5.156 7 C -0.106 4.106 8 N -0.152 5.152 9 C -0.045 4.045 10 C -0.036 4.036 11 N -0.349 5.349 12 C 0.325 3.675 13 O -0.437 6.437 14 C -0.032 4.032 15 H 0.140 0.860 16 N -0.362 5.362 17 C -0.162 4.162 18 C -0.005 4.005 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.776 3.224 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.211 1.211 27 C 0.127 3.873 28 H 0.121 0.879 29 C -0.198 4.198 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.031 0.969 46 H 0.019 0.981 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.929 2.619 -6.459 19.236 hybrid contribution 1.843 0.764 2.107 2.901 sum -16.087 3.383 -4.352 17.005 Atomic orbital electron populations 1.21765 0.91384 1.02607 1.03495 1.19877 0.97787 0.95747 0.89444 1.21791 1.00441 0.93935 1.03601 1.25358 0.95071 0.88663 0.98270 1.74354 1.21857 1.21899 0.98826 1.73941 1.11757 1.02919 1.26937 1.24887 1.03211 1.00679 0.81814 1.46085 1.38012 1.22928 1.08187 1.22824 1.01873 0.92413 0.87407 1.22439 0.99453 0.95530 0.86196 1.48338 1.10571 1.64084 1.11856 1.20933 0.80612 0.76045 0.89918 1.90657 1.65704 1.54981 1.32325 1.21479 0.94616 0.95861 0.91197 0.86021 1.58758 1.10792 1.36205 1.30461 1.22204 1.00626 0.96922 0.96433 1.18956 0.95152 0.95302 0.91041 1.21583 1.40381 0.93630 1.02247 0.93018 1.25724 0.95802 0.97585 0.99541 1.70039 1.44907 1.19507 1.21833 0.85627 0.77852 0.79891 0.79044 1.19262 1.20103 1.21086 1.19551 0.92194 0.87707 0.87837 0.87854 1.21977 0.98847 0.97338 1.01688 0.92857 0.92423 0.88941 0.87157 0.93882 0.92707 0.88766 0.88763 0.83419 0.85111 0.86701 0.84401 0.82852 0.94385 0.91226 0.96885 0.98073 0.92772 0.90834 0.90090 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.18 71.98 0.66 -1.07 16 2 C -0.01 -0.12 3.31 -11.54 -0.04 -0.16 16 3 C -0.14 -2.24 9.18 71.98 0.66 -1.58 16 4 C 0.19 4.59 6.57 138.12 0.91 5.49 16 5 N -0.33 -10.07 12.23 -50.42 -0.62 -10.68 16 6 N -0.32 -10.15 12.21 -50.19 -0.61 -10.77 16 7 C 0.16 4.41 7.17 138.22 0.99 5.40 16 8 N -0.46 -10.32 3.11 -504.54 -1.57 -11.89 16 9 C 0.08 1.21 6.64 86.55 0.57 1.79 16 10 C 0.09 1.35 5.56 86.38 0.48 1.83 16 11 N -0.61 -14.19 2.63 -796.96 -2.10 -16.29 16 12 C 0.54 15.85 6.96 87.66 0.61 16.46 16 13 O -0.56 -20.65 15.79 -3.06 -0.05 -20.70 16 14 C 0.08 2.41 2.35 44.17 0.10 2.52 16 15 H 0.12 2.98 6.62 -2.38 -0.02 2.97 16 16 N -0.83 -25.74 8.94 -171.79 -1.54 -27.28 16 17 C -0.12 -4.15 4.52 30.60 0.14 -4.02 16 18 C 0.03 1.42 4.74 29.85 0.14 1.56 16 19 C -0.54 -27.22 9.11 25.60 0.23 -26.99 16 20 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 21 C 0.01 0.65 5.46 84.66 0.46 1.11 16 22 N -0.92 -50.63 13.29 21.45 0.28 -50.34 16 23 Si 0.95 40.88 29.54 68.60 2.03 42.91 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.23 5.71 3.25 44.14 0.14 5.86 16 28 H 0.10 3.04 7.23 -2.39 -0.02 3.02 16 29 C -0.14 -2.64 9.44 71.98 0.68 -1.96 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.22 7.36 -2.39 -0.02 1.20 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.71 7.00 -2.39 -0.02 1.69 16 38 H 0.15 1.21 7.83 -2.39 -0.02 1.19 16 39 H 0.13 1.92 5.12 -2.38 -0.01 1.91 16 40 H 0.11 1.22 7.54 -2.39 -0.02 1.20 16 41 H 0.34 11.19 8.58 -89.70 -0.77 10.42 16 42 H 0.36 11.07 7.55 -89.70 -0.68 10.39 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 2.13 5.98 -2.39 -0.01 2.11 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 47 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 48 H 0.07 1.16 7.54 -2.39 -0.02 1.15 16 49 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.96 395.17 2.10 -68.86 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.48 Total: 29.94 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.75 Total: 6.24 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.15 Total: -127.26 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -70.96 2.10 -68.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343779126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.720 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds