Wall clock time and date at job start Tue Mar 31 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 N 1.46496 * 109.47415 * 120.00763 * 2 1 3 5 5 C 1.34773 * 120.00179 * 154.72469 * 4 2 1 6 6 O 1.21660 * 120.00303 * 0.26897 * 5 4 2 7 7 C 1.46967 * 120.00001 * 180.27010 * 5 4 2 8 8 N 1.31601 * 126.49474 * 355.02877 * 7 5 4 9 9 N 1.28548 * 109.69134 * 179.97438 * 8 7 5 10 10 C 1.31994 * 110.00906 * 0.02562 * 9 8 7 11 11 N 1.37779 * 126.27552 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99666 * 243.90402 * 11 10 9 13 13 C 1.46899 * 111.00010 * 7.85248 * 11 10 9 14 14 H 1.09000 * 109.46950 * 55.00623 * 13 11 10 15 15 C 1.52998 * 109.47345 * 295.00584 * 13 11 10 16 16 C 1.50704 * 109.47179 * 175.00226 * 13 11 10 17 17 H 1.07995 * 119.99856 * 5.49593 * 16 13 11 18 18 C 1.37879 * 119.99788 * 185.49538 * 16 13 11 19 19 N 1.31514 * 120.00172 * 9.23958 * 18 16 13 20 20 Si 1.86798 * 119.99764 * 189.24042 * 18 16 13 21 21 H 1.48496 * 109.47444 * 94.98638 * 20 18 16 22 22 H 1.48495 * 109.47297 * 214.99060 * 20 18 16 23 23 H 1.48507 * 109.47059 * 334.98578 * 20 18 16 24 24 N 1.35359 * 107.44829 * 359.74997 * 10 9 8 25 25 C 1.46503 * 127.07710 * 180.24332 * 24 10 9 26 26 H 1.08992 * 115.55148 * 275.92251 * 25 24 10 27 27 C 1.53009 * 117.49762 * 130.21841 * 25 24 10 28 28 C 1.52996 * 59.99833 * 252.50896 * 27 25 24 29 29 H 1.09003 * 117.50135 * 107.49055 * 28 27 25 30 30 C 1.53002 * 117.50020 * 252.50828 * 28 27 25 31 31 H 1.09001 * 109.46794 * 299.99274 * 1 2 3 32 32 H 1.08996 * 109.47158 * 59.99386 * 1 2 3 33 33 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46956 * 240.00014 * 2 1 3 35 35 H 1.08995 * 109.47056 * 300.00239 * 3 2 1 36 36 H 1.09001 * 109.46653 * 60.00640 * 3 2 1 37 37 H 1.09006 * 109.47053 * 180.02562 * 3 2 1 38 38 H 0.97003 * 119.99543 * 334.99210 * 4 2 1 39 39 H 1.09000 * 109.47000 * 61.00220 * 12 11 10 40 40 H 1.09000 * 109.46894 * 181.00621 * 12 11 10 41 41 H 1.08996 * 109.46946 * 301.00179 * 12 11 10 42 42 H 1.09007 * 109.46996 * 182.27473 * 15 13 11 43 43 H 1.09000 * 109.46877 * 302.27142 * 15 13 11 44 44 H 1.08999 * 109.47560 * 62.27143 * 15 13 11 45 45 H 0.96996 * 119.99816 * 179.97438 * 19 18 16 46 46 H 1.08999 * 117.49515 * 359.97438 * 27 25 24 47 47 H 1.08996 * 117.49956 * 145.02115 * 27 25 24 48 48 H 1.08998 * 109.46828 * 128.62170 * 30 28 27 49 49 H 1.08997 * 109.47089 * 248.62427 * 30 28 27 50 50 H 1.08998 * 109.46985 * 8.62347 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 3.2381 -1.2641 1.1923 6 8 3.9356 -1.2038 0.1973 7 6 3.7256 -1.9621 2.3902 8 7 3.1225 -2.0270 3.5581 9 7 3.8335 -2.7198 4.3748 10 6 4.9327 -3.1369 3.7749 11 7 5.9283 -3.9042 4.3391 12 6 7.1964 -3.1644 4.3929 13 6 5.5369 -4.3756 5.6743 14 1 4.5858 -4.9039 5.6086 15 6 5.3914 -3.1783 6.6155 16 6 6.5938 -5.3083 6.2075 17 1 7.5090 -5.4598 5.6546 18 6 6.3921 -5.9681 7.4012 19 7 5.2134 -5.9292 7.9832 20 14 7.7932 -6.9174 8.1919 21 1 8.4736 -6.0550 9.1911 22 1 7.2541 -8.1256 8.8661 23 1 8.7659 -7.3263 7.1469 24 7 4.8996 -2.6779 2.5020 25 6 5.9049 -2.8943 1.4585 26 1 6.7497 -2.2057 1.4696 27 6 5.4142 -3.3894 0.0964 28 6 6.1750 -4.3369 1.0260 29 1 5.6048 -5.1249 1.5179 30 6 7.6102 -4.7022 0.6417 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 3.1301 1.4425 -0.0005 38 1 1.4622 -0.7388 1.9894 39 1 7.0713 -2.2732 5.0078 40 1 7.9693 -3.7993 4.8262 41 1 7.4894 -2.8721 3.3846 42 1 5.1405 -3.5310 7.6160 43 1 6.3310 -2.6267 6.6498 44 1 4.5992 -2.5241 6.2516 45 1 5.0715 -6.3937 8.8228 46 1 4.3434 -3.5544 -0.0231 47 1 5.9360 -3.0263 -0.7889 48 1 8.2695 -4.5281 1.4921 49 1 7.6538 -5.7536 0.3574 50 1 7.9297 -4.0852 -0.1981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411656856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:53 Heat of formation + Delta-G solvation = 87.344027 kcal Electronic energy + Delta-G solvation = -30605.247545 eV Core-core repulsion = 26670.707177 eV Total energy + Delta-G solvation = -3934.540367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 9.62 seconds Orbital eigenvalues (eV) -42.66141 -39.64629 -37.97972 -37.39867 -36.06594 -33.22950 -32.59985 -31.94967 -29.61114 -28.85637 -28.21591 -27.48392 -25.98217 -25.21316 -23.93457 -23.04091 -22.04506 -21.03683 -20.65429 -20.11322 -19.44360 -17.71687 -16.94610 -16.39962 -16.07782 -16.01582 -15.35240 -14.96445 -14.70215 -14.47351 -14.35797 -14.03464 -13.94809 -13.59378 -13.28776 -13.09330 -12.93464 -12.60257 -12.47182 -12.39972 -12.24417 -11.70471 -11.67238 -11.57635 -11.43387 -11.30821 -11.22960 -10.98120 -10.91029 -10.88435 -10.77497 -10.54027 -10.25895 -10.10890 -9.94538 -9.80043 -9.63732 -9.30248 -9.10074 -8.94237 -8.41712 -7.54503 -6.09757 -4.12977 1.41828 2.24376 2.78265 3.17235 3.26948 3.34532 3.36293 3.45622 3.55020 4.25912 4.37045 4.48178 4.60394 4.63822 4.71414 4.79601 4.90512 4.98532 5.24010 5.29716 5.30550 5.35250 5.41522 5.51412 5.51795 5.61910 5.66479 5.76781 5.78664 5.82949 5.91967 5.94222 5.98136 6.00210 6.07412 6.17753 6.28516 6.31672 6.38230 6.66787 6.80122 7.00031 7.12365 7.31594 7.37939 7.50789 7.70973 7.89233 8.03622 8.10498 8.38657 8.86157 9.04074 9.50142 10.99391 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.003304 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.528725 B = 8473.352677 C = 9678.953517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.708 5.708 5 C 0.618 3.382 6 O -0.532 6.532 7 C 0.084 3.916 8 N -0.234 5.234 9 N -0.310 5.310 10 C 0.412 3.588 11 N -0.447 5.447 12 C 0.034 3.966 13 C 0.226 3.774 14 H 0.059 0.941 15 C -0.171 4.171 16 C -0.517 4.517 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.429 5.429 25 C 0.062 3.938 26 H 0.129 0.871 27 C -0.130 4.130 28 C -0.136 4.136 29 H 0.115 0.885 30 C -0.119 4.119 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.036 0.964 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.024 0.976 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 10.299 -17.219 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.223 4.223 4 N -0.361 5.361 5 C 0.402 3.598 6 O -0.407 6.407 7 C -0.181 4.181 8 N -0.082 5.082 9 N -0.160 5.160 10 C 0.058 3.942 11 N -0.169 5.169 12 C -0.112 4.112 13 C 0.122 3.878 14 H 0.077 0.923 15 C -0.231 4.231 16 C -0.556 4.556 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 N -0.123 5.123 25 C -0.042 4.042 26 H 0.147 0.853 27 C -0.168 4.168 28 C -0.155 4.155 29 H 0.133 0.867 30 C -0.176 4.176 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.247 0.753 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.516 10.063 -17.063 20.119 hybrid contribution 1.259 -0.171 0.588 1.400 sum -2.258 9.892 -16.475 19.349 Atomic orbital electron populations 1.22087 0.93845 1.02933 1.03054 1.20972 0.94138 0.92987 0.88292 1.22201 1.02233 0.95679 1.02159 1.45749 1.17128 1.55715 1.17473 1.16156 0.81721 0.77662 0.84233 1.90821 1.56212 1.60321 1.33358 1.23567 0.89302 1.06874 0.98337 1.74375 1.23197 1.12940 0.97733 1.75235 1.04565 1.14614 1.21609 1.23144 0.96329 0.92638 0.82109 1.58990 0.99938 1.29976 1.28035 1.22403 0.91114 0.97645 1.00084 1.19440 0.98291 0.92540 0.77498 0.92284 1.22454 0.98600 0.98661 1.03365 1.20994 1.02840 1.25978 1.05744 0.91698 1.24883 0.95544 0.96031 0.97167 1.69991 1.20944 1.42831 1.18118 0.86526 0.82267 0.79332 0.79543 1.20681 1.21222 1.19802 1.45274 1.17050 1.40029 1.09933 1.21964 0.93061 0.99992 0.89167 0.85317 1.23294 1.01138 1.00182 0.92163 1.22868 0.98903 0.92053 1.01640 0.86712 1.21347 0.93138 1.01851 1.01281 0.91760 0.90829 0.91760 0.89246 0.91590 0.92263 0.92002 0.75273 0.94498 0.88447 0.93168 0.90802 0.95650 0.93139 0.92724 0.88529 0.87372 0.91419 0.91503 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.38 37.16 0.35 -0.69 16 2 C 0.14 1.25 3.19 -67.93 -0.22 1.03 16 3 C -0.16 -1.37 9.49 37.16 0.35 -1.02 16 4 N -0.71 -8.13 5.07 -55.03 -0.28 -8.41 16 5 C 0.62 9.13 7.58 -12.73 -0.10 9.03 16 6 O -0.53 -8.24 13.22 5.22 0.07 -8.17 16 7 C 0.08 1.48 7.80 -153.51 -1.20 0.28 16 8 N -0.23 -4.57 11.93 32.51 0.39 -4.18 16 9 N -0.31 -6.87 9.06 30.07 0.27 -6.60 16 10 C 0.41 8.53 6.64 -320.56 -2.13 6.40 16 11 N -0.45 -9.48 4.75 -176.46 -0.84 -10.32 16 12 C 0.03 0.63 8.68 60.07 0.52 1.15 16 13 C 0.23 5.65 1.90 -68.86 -0.13 5.52 16 14 H 0.06 1.70 7.99 -51.93 -0.41 1.29 16 15 C -0.17 -4.19 8.38 37.16 0.31 -3.87 16 16 C -0.52 -13.53 7.94 -34.44 -0.27 -13.80 16 17 H 0.06 1.65 6.57 -52.49 -0.34 1.30 16 18 C 0.07 1.80 5.19 -17.82 -0.09 1.70 16 19 N -0.88 -24.93 12.15 55.43 0.67 -24.26 16 20 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 N -0.43 -7.61 3.09 -108.06 -0.33 -7.95 16 25 C 0.06 0.91 4.29 -67.93 -0.29 0.61 16 26 H 0.13 1.72 7.72 -51.93 -0.40 1.32 16 27 C -0.13 -1.66 7.76 -26.73 -0.21 -1.87 16 28 C -0.14 -1.80 6.30 -90.62 -0.57 -2.37 16 29 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 30 C -0.12 -1.27 10.19 37.16 0.38 -0.89 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.88 7.57 -51.93 -0.39 0.48 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.41 4.48 8.32 -40.82 -0.34 4.14 16 39 H 0.04 0.69 6.40 -51.93 -0.33 0.36 16 40 H 0.10 1.80 6.34 -51.93 -0.33 1.47 16 41 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 42 H 0.07 1.97 6.85 -51.93 -0.36 1.61 16 43 H 0.02 0.57 6.33 -51.93 -0.33 0.24 16 44 H 0.05 1.22 5.63 -51.93 -0.29 0.93 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 47 H 0.11 1.19 8.05 -51.93 -0.42 0.77 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -30.38 395.79 -10.41 -40.79 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.01 Total: 6.32 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -3.29 Total: 1.22 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.12 Total: -61.72 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.38 -10.41 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411656856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.132 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.62 seconds