Wall clock time and date at job start Tue Mar 31 2020 23:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 N 1.46496 * 109.47415 * 120.00763 * 2 1 3 5 5 C 1.34773 * 120.00179 * 154.72469 * 4 2 1 6 6 O 1.21660 * 120.00303 * 0.26897 * 5 4 2 7 7 C 1.46967 * 120.00001 * 180.27010 * 5 4 2 8 8 N 1.31601 * 126.49474 * 355.02877 * 7 5 4 9 9 N 1.28548 * 109.69134 * 179.97438 * 8 7 5 10 10 C 1.31994 * 110.00906 * 0.02562 * 9 8 7 11 11 N 1.37779 * 126.27552 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99666 * 243.90402 * 11 10 9 13 13 C 1.46899 * 111.00010 * 7.85248 * 11 10 9 14 14 H 1.09000 * 109.46950 * 55.00623 * 13 11 10 15 15 C 1.52998 * 109.47345 * 295.00584 * 13 11 10 16 16 C 1.50704 * 109.47179 * 175.00226 * 13 11 10 17 17 H 1.07995 * 119.99856 * 5.49593 * 16 13 11 18 18 C 1.37879 * 119.99788 * 185.49538 * 16 13 11 19 19 N 1.31514 * 120.00172 * 9.23958 * 18 16 13 20 20 Si 1.86798 * 119.99764 * 189.24042 * 18 16 13 21 21 H 1.48496 * 109.47444 * 94.98638 * 20 18 16 22 22 H 1.48495 * 109.47297 * 214.99060 * 20 18 16 23 23 H 1.48507 * 109.47059 * 334.98578 * 20 18 16 24 24 N 1.35359 * 107.44829 * 359.74997 * 10 9 8 25 25 C 1.46503 * 127.07710 * 180.24332 * 24 10 9 26 26 H 1.08992 * 115.55148 * 275.92251 * 25 24 10 27 27 C 1.53009 * 117.49762 * 130.21841 * 25 24 10 28 28 C 1.52996 * 59.99833 * 252.50896 * 27 25 24 29 29 H 1.09003 * 117.50135 * 107.49055 * 28 27 25 30 30 C 1.53002 * 117.50020 * 252.50828 * 28 27 25 31 31 H 1.09001 * 109.46794 * 299.99274 * 1 2 3 32 32 H 1.08996 * 109.47158 * 59.99386 * 1 2 3 33 33 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46956 * 240.00014 * 2 1 3 35 35 H 1.08995 * 109.47056 * 300.00239 * 3 2 1 36 36 H 1.09001 * 109.46653 * 60.00640 * 3 2 1 37 37 H 1.09006 * 109.47053 * 180.02562 * 3 2 1 38 38 H 0.97003 * 119.99543 * 334.99210 * 4 2 1 39 39 H 1.09000 * 109.47000 * 61.00220 * 12 11 10 40 40 H 1.09000 * 109.46894 * 181.00621 * 12 11 10 41 41 H 1.08996 * 109.46946 * 301.00179 * 12 11 10 42 42 H 1.09007 * 109.46996 * 182.27473 * 15 13 11 43 43 H 1.09000 * 109.46877 * 302.27142 * 15 13 11 44 44 H 1.08999 * 109.47560 * 62.27143 * 15 13 11 45 45 H 0.96996 * 119.99816 * 179.97438 * 19 18 16 46 46 H 1.08999 * 117.49515 * 359.97438 * 27 25 24 47 47 H 1.08996 * 117.49956 * 145.02115 * 27 25 24 48 48 H 1.08998 * 109.46828 * 128.62170 * 30 28 27 49 49 H 1.08997 * 109.47089 * 248.62427 * 30 28 27 50 50 H 1.08998 * 109.46985 * 8.62347 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 3.2381 -1.2641 1.1923 6 8 3.9356 -1.2038 0.1973 7 6 3.7256 -1.9621 2.3902 8 7 3.1225 -2.0270 3.5581 9 7 3.8335 -2.7198 4.3748 10 6 4.9327 -3.1369 3.7749 11 7 5.9283 -3.9042 4.3391 12 6 7.1964 -3.1644 4.3929 13 6 5.5369 -4.3756 5.6743 14 1 4.5858 -4.9039 5.6086 15 6 5.3914 -3.1783 6.6155 16 6 6.5938 -5.3083 6.2075 17 1 7.5090 -5.4598 5.6546 18 6 6.3921 -5.9681 7.4012 19 7 5.2134 -5.9292 7.9832 20 14 7.7932 -6.9174 8.1919 21 1 8.4736 -6.0550 9.1911 22 1 7.2541 -8.1256 8.8661 23 1 8.7659 -7.3263 7.1469 24 7 4.8996 -2.6779 2.5020 25 6 5.9049 -2.8943 1.4585 26 1 6.7497 -2.2057 1.4696 27 6 5.4142 -3.3894 0.0964 28 6 6.1750 -4.3369 1.0260 29 1 5.6048 -5.1249 1.5179 30 6 7.6102 -4.7022 0.6417 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 3.1301 1.4425 -0.0005 38 1 1.4622 -0.7388 1.9894 39 1 7.0713 -2.2732 5.0078 40 1 7.9693 -3.7993 4.8262 41 1 7.4894 -2.8721 3.3846 42 1 5.1405 -3.5310 7.6160 43 1 6.3310 -2.6267 6.6498 44 1 4.5992 -2.5241 6.2516 45 1 5.0715 -6.3937 8.8228 46 1 4.3434 -3.5544 -0.0231 47 1 5.9360 -3.0263 -0.7889 48 1 8.2695 -4.5281 1.4921 49 1 7.6538 -5.7536 0.3574 50 1 7.9297 -4.0852 -0.1981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411656856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:39 Heat of formation + Delta-G solvation = 70.290630 kcal Electronic energy + Delta-G solvation = -30605.987035 eV Core-core repulsion = 26670.707177 eV Total energy + Delta-G solvation = -3935.279858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.79 seconds Orbital eigenvalues (eV) -44.14445 -40.77217 -39.22869 -38.99855 -36.99304 -34.97391 -34.20868 -32.98559 -31.21011 -30.50986 -29.20963 -28.08170 -27.50277 -27.22786 -25.33400 -24.26478 -23.58661 -22.03467 -21.85310 -21.31930 -20.92740 -19.01892 -18.44007 -18.00268 -17.46168 -17.25416 -17.00317 -16.47214 -16.01414 -15.74869 -15.43213 -15.33810 -15.10937 -14.87050 -14.76178 -14.31957 -13.90182 -13.82689 -13.54288 -13.34007 -13.21266 -13.06000 -13.03476 -12.95927 -12.77171 -12.68259 -12.50087 -12.45518 -12.29742 -12.26522 -12.09775 -11.94084 -11.91638 -11.91337 -11.33713 -11.11277 -10.95860 -10.80435 -10.71643 -10.49059 -10.21032 -9.19747 -8.15021 -6.25200 0.05393 0.91176 1.29854 1.45813 1.46613 1.57126 2.05922 2.11330 2.41323 2.45350 2.85796 3.17617 3.21950 3.54906 3.57909 3.76370 3.86929 3.93158 4.11253 4.14474 4.32852 4.33272 4.44087 4.46589 4.58943 4.61127 4.71729 4.72826 4.77605 4.81510 4.89220 4.92866 4.94638 4.97832 4.99459 5.03714 5.11586 5.17716 5.27484 5.28658 5.34301 5.37570 5.44113 5.51536 5.58980 5.75374 5.97630 6.12405 6.28011 6.50831 6.82795 6.92239 7.41420 7.50245 8.94908 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.003304 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.528725 B = 8473.352677 C = 9678.953517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.160 4.160 4 N -0.694 5.694 5 C 0.617 3.383 6 O -0.538 6.538 7 C 0.098 3.902 8 N -0.253 5.253 9 N -0.351 5.351 10 C 0.397 3.603 11 N -0.448 5.448 12 C 0.037 3.963 13 C 0.239 3.761 14 H 0.009 0.991 15 C -0.155 4.155 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.016 3.984 19 N -0.919 5.919 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.261 1.261 24 N -0.423 5.423 25 C 0.038 3.962 26 H 0.147 0.853 27 C -0.111 4.111 28 C -0.130 4.130 29 H 0.085 0.915 30 C -0.114 4.114 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.414 0.586 39 H 0.030 0.970 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.263 0.737 46 H 0.080 0.920 47 H 0.135 0.865 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 11.252 -19.593 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.218 4.218 4 N -0.346 5.346 5 C 0.399 3.601 6 O -0.413 6.413 7 C -0.170 4.170 8 N -0.101 5.101 9 N -0.201 5.201 10 C 0.041 3.959 11 N -0.170 5.170 12 C -0.109 4.109 13 C 0.134 3.866 14 H 0.027 0.973 15 C -0.214 4.214 16 C -0.563 4.563 17 H 0.092 0.908 18 C -0.183 4.183 19 N -0.557 5.557 20 Si 0.789 3.211 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.185 1.185 24 N -0.116 5.116 25 C -0.065 4.065 26 H 0.165 0.835 27 C -0.149 4.149 28 C -0.150 4.150 29 H 0.103 0.897 30 C -0.171 4.171 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.048 0.952 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.153 0.847 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.264 11.042 -19.470 22.497 hybrid contribution 0.751 -0.389 1.174 1.447 sum -1.512 10.652 -18.296 21.225 Atomic orbital electron populations 1.22067 0.91591 1.03203 1.04431 1.21236 0.95843 0.92941 0.86656 1.22168 1.00771 0.95328 1.03543 1.45870 1.15798 1.54460 1.18522 1.16007 0.82758 0.78104 0.83230 1.90807 1.56671 1.60804 1.33040 1.24290 0.88685 1.05374 0.98624 1.74286 1.23660 1.13676 0.98435 1.75099 1.05629 1.15908 1.23423 1.23008 0.96071 0.93579 0.83280 1.58869 1.00993 1.31205 1.25972 1.22468 0.89606 0.96923 1.01920 1.19001 0.95855 0.92254 0.79510 0.97257 1.22247 0.99032 0.98537 1.01588 1.21300 1.03153 1.25899 1.05906 0.90823 1.25740 0.97744 0.97122 0.97743 1.70141 1.23087 1.44021 1.18499 0.85456 0.79256 0.77707 0.78702 1.20094 1.21483 1.18451 1.45439 1.17583 1.39067 1.09524 1.22445 0.93286 1.01423 0.89317 0.83529 1.23312 1.00466 0.99006 0.92104 1.22848 1.00370 0.90503 1.01235 0.89696 1.21361 0.90906 1.02776 1.02021 0.91120 0.88697 0.92071 0.89858 0.89253 0.91879 0.94166 0.74918 0.95157 0.88539 0.90051 0.93578 0.94421 0.93314 0.92831 0.90113 0.84723 0.91699 0.90871 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.38 71.98 0.68 -0.95 16 2 C 0.14 2.17 3.19 44.99 0.14 2.31 16 3 C -0.16 -2.34 9.49 71.98 0.68 -1.66 16 4 N -0.69 -15.25 5.07 -446.24 -2.26 -17.52 16 5 C 0.62 17.72 7.58 86.53 0.66 18.38 16 6 O -0.54 -15.85 13.22 -4.22 -0.06 -15.90 16 7 C 0.10 3.43 7.80 135.73 1.06 4.49 16 8 N -0.25 -10.19 11.93 -51.06 -0.61 -10.80 16 9 N -0.35 -16.21 9.06 -58.77 -0.53 -16.74 16 10 C 0.40 16.81 6.64 260.70 1.73 18.54 16 11 N -0.45 -19.37 4.75 -712.20 -3.38 -22.75 16 12 C 0.04 1.33 8.68 127.69 1.11 2.44 16 13 C 0.24 12.41 1.90 44.17 0.08 12.49 16 14 H 0.01 0.58 7.99 -2.39 -0.02 0.56 16 15 C -0.15 -7.85 8.38 71.98 0.60 -7.24 16 16 C -0.52 -27.83 7.94 25.60 0.20 -27.63 16 17 H 0.07 3.71 6.57 -2.91 -0.02 3.69 16 18 C 0.02 0.89 5.19 84.66 0.44 1.33 16 19 N -0.92 -53.71 12.15 21.45 0.26 -53.45 16 20 Si 0.96 42.43 29.55 68.60 2.03 44.46 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 N -0.42 -15.00 3.09 -495.79 -1.53 -16.54 16 25 C 0.04 1.05 4.29 44.99 0.19 1.24 16 26 H 0.15 3.52 7.72 -2.39 -0.02 3.51 16 27 C -0.11 -2.63 7.76 30.60 0.24 -2.39 16 28 C -0.13 -3.28 6.30 -10.79 -0.07 -3.35 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 C -0.11 -2.12 10.19 71.98 0.73 -1.38 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.08 1.48 7.57 -2.38 -0.02 1.46 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.41 8.74 8.32 -92.71 -0.77 7.97 16 39 H 0.03 1.11 6.40 -2.39 -0.02 1.10 16 40 H 0.10 3.46 6.34 -2.39 -0.02 3.45 16 41 H 0.08 2.37 6.20 -2.39 -0.01 2.36 16 42 H 0.05 2.56 6.85 -2.38 -0.02 2.54 16 43 H 0.04 1.75 6.33 -2.39 -0.02 1.74 16 44 H 0.05 2.46 5.63 -2.39 -0.01 2.45 16 45 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.08 2.20 7.50 -2.39 -0.02 2.18 16 47 H 0.13 2.48 8.05 -2.39 -0.02 2.46 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.08 1.13 7.90 -2.39 -0.02 1.11 16 Total: -1.00 -68.48 395.79 2.58 -65.91 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.18 Total: 26.72 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 8.48 Total: 16.62 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -8.06 Total: -137.80 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.06 Total: -15.90 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.48 2.58 -65.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411656856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.197 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.80 seconds