Wall clock time and date at job start Tue Mar 31 2020 19:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47104 * 2 1 4 4 N 1.27939 * 119.99948 * 94.99629 * 3 2 1 5 5 Si 1.86800 * 119.99974 * 274.99857 * 3 2 1 6 6 H 1.48502 * 109.46938 * 359.97438 * 5 3 2 7 7 H 1.48502 * 109.47092 * 119.99694 * 5 3 2 8 8 H 1.48489 * 109.47147 * 240.00166 * 5 3 2 9 9 C 1.50698 * 109.46687 * 119.99776 * 2 1 3 10 10 O 1.21278 * 119.99790 * 239.99695 * 9 2 1 11 11 N 1.34774 * 120.00079 * 60.00620 * 9 2 1 12 12 C 1.46507 * 120.00085 * 179.97438 * 11 9 2 13 13 C 1.52997 * 109.47024 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46811 * 179.97438 * 13 12 11 15 15 C 1.53117 * 109.52114 * 175.00159 * 14 13 12 16 16 C 1.53044 * 109.27792 * 177.56078 * 15 14 13 17 17 N 1.46847 * 109.51335 * 300.82256 * 16 15 14 18 18 C 1.46901 * 111.00144 * 185.83239 * 17 16 15 19 19 C 1.50696 * 109.47104 * 170.00196 * 18 17 16 20 20 C 1.35350 * 126.91282 * 94.69161 * 19 18 17 21 21 N 1.33781 * 106.49423 * 179.90459 * 20 19 18 22 22 N 1.28625 * 108.88523 * 0.36604 * 21 20 19 23 23 N 1.28717 * 110.18401 * 359.76328 * 22 21 20 24 24 C 1.46499 * 125.87168 * 179.97438 * 23 22 21 25 25 C 1.46830 * 111.21086 * 61.74856 * 17 16 15 26 26 C 1.53038 * 109.51757 * 298.25173 * 25 17 16 27 27 H 1.09000 * 109.47218 * 300.00373 * 1 2 3 28 28 H 1.09000 * 109.47012 * 60.00664 * 1 2 3 29 29 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47218 * 239.99627 * 2 1 3 31 31 H 0.97000 * 119.99942 * 180.02562 * 4 3 2 32 32 H 0.96999 * 120.00526 * 359.97438 * 11 9 2 33 33 H 1.09000 * 109.46959 * 59.99441 * 12 11 9 34 34 H 1.08997 * 109.46901 * 299.99725 * 12 11 9 35 35 H 1.09000 * 109.47414 * 60.00081 * 13 12 11 36 36 H 1.08997 * 109.47353 * 299.99811 * 13 12 11 37 37 H 1.08998 * 109.52583 * 54.87570 * 14 13 12 38 38 H 1.09001 * 109.50874 * 57.62258 * 15 14 13 39 39 H 1.09002 * 109.53469 * 297.51379 * 15 14 13 40 40 H 1.09002 * 109.46396 * 60.83566 * 16 15 14 41 41 H 1.08994 * 109.46485 * 180.81491 * 16 15 14 42 42 H 1.09001 * 109.46985 * 290.00439 * 18 17 16 43 43 H 1.09002 * 109.46593 * 50.00429 * 18 17 16 44 44 H 1.08000 * 126.75085 * 0.03177 * 20 19 18 45 45 H 1.09001 * 109.46870 * 270.02885 * 24 23 22 46 46 H 1.08998 * 109.46876 * 30.03078 * 24 23 22 47 47 H 1.09000 * 109.46725 * 150.02903 * 24 23 22 48 48 H 1.08995 * 109.46742 * 178.23410 * 25 17 16 49 49 H 1.09004 * 109.45381 * 58.25744 * 25 17 16 50 50 H 1.08997 * 109.50308 * 299.23764 * 26 25 17 51 51 H 1.09000 * 109.50697 * 179.11489 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9918 1.1038 5 14 2.2108 2.3484 -1.6116 6 1 1.7970 1.4711 -2.7360 7 1 1.3500 3.5582 -1.5843 8 1 3.6276 2.7529 -1.7956 9 6 2.0323 -0.7104 1.2305 10 8 2.7295 -0.1209 2.0288 11 7 1.7067 -2.0007 1.4438 12 6 2.1954 -2.6915 2.6398 13 6 1.6849 -4.1337 2.6401 14 6 2.1958 -4.8553 3.8888 15 6 1.5855 -6.2580 3.9549 16 6 2.1469 -6.9964 5.1721 17 7 3.6086 -7.0836 5.0618 18 6 4.1700 -7.9057 6.1421 19 6 5.6259 -8.1762 5.8627 20 6 6.6866 -7.4752 6.3269 21 7 7.7793 -8.0668 5.8310 22 7 7.4186 -9.0629 5.1016 23 7 6.1356 -9.1654 5.0927 24 6 5.3602 -10.1781 4.3721 25 6 4.2206 -5.7491 5.0445 26 6 3.7211 -4.9734 3.8234 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 2.6596 2.9064 1.1038 32 1 1.1489 -2.4721 0.8055 33 1 1.8325 -2.1776 3.5299 34 1 3.2854 -2.6915 2.6394 35 1 2.0475 -4.6478 1.7499 36 1 0.5949 -4.1333 2.6407 37 1 1.9109 -4.2919 4.7773 38 1 1.8373 -6.8076 3.0479 39 1 0.5020 -6.1802 4.0443 40 1 1.8829 -6.4537 6.0798 41 1 1.7254 -8.0007 5.2140 42 1 4.0742 -7.3753 7.0896 43 1 3.6292 -8.8504 6.1982 44 1 6.6569 -6.6099 6.9725 45 1 5.1248 -9.8123 3.3726 46 1 5.9437 -11.0956 4.2952 47 1 4.4353 -10.3799 4.9124 48 1 5.3049 -5.8473 4.9937 49 1 3.9467 -5.2122 5.9527 50 1 4.0065 -5.5027 2.9144 51 1 4.1633 -3.9771 3.8192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421619592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:24 Heat of formation + Delta-G solvation = 82.956072 kcal Electronic energy + Delta-G solvation = -29208.828148 eV Core-core repulsion = 25260.441765 eV Total energy + Delta-G solvation = -3948.386382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.214 amu Computer time = 10.33 seconds Orbital eigenvalues (eV) -44.29027 -40.92477 -40.18269 -37.38158 -36.55684 -35.66871 -35.12332 -33.41598 -32.52436 -31.71282 -30.19829 -28.82235 -27.20422 -25.92721 -24.85802 -24.13578 -23.54540 -22.54141 -22.16431 -21.52480 -20.65866 -20.14091 -18.65481 -18.19085 -17.83126 -17.09128 -16.74300 -16.64469 -16.49051 -16.19777 -15.92958 -15.53867 -15.31571 -15.11275 -14.91649 -14.69120 -14.31357 -14.27974 -14.13165 -14.06749 -13.83841 -13.76957 -13.68212 -13.26309 -13.04926 -12.86186 -12.75064 -12.67053 -12.49652 -12.34864 -12.20869 -12.11144 -12.10444 -11.83332 -11.59616 -11.38565 -11.29190 -11.13017 -11.03476 -10.74421 -10.25982 -9.96158 -9.52126 -9.35696 0.54192 0.92376 1.10532 1.47675 1.49834 1.53437 1.76768 1.83573 1.89318 2.39877 2.91772 3.35507 3.42576 3.64102 3.75470 3.81049 3.83529 3.92115 4.02918 4.04349 4.19782 4.24910 4.25762 4.29645 4.32998 4.34941 4.43396 4.47196 4.53133 4.54495 4.62488 4.66100 4.70910 4.77617 4.80806 4.89152 4.94658 4.96246 4.98597 5.03317 5.08978 5.10227 5.15345 5.17846 5.25872 5.32068 5.33759 5.53980 5.58784 5.62112 5.97877 6.09479 6.69401 7.04222 7.46069 7.46597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.024 4.024 4 N -0.624 5.624 5 Si 0.982 3.018 6 H -0.207 1.207 7 H -0.255 1.255 8 H -0.269 1.269 9 C 0.505 3.495 10 O -0.555 6.555 11 N -0.724 5.724 12 C 0.122 3.878 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.105 4.105 16 C 0.055 3.945 17 N -0.539 5.539 18 C 0.128 3.872 19 C 0.004 3.996 20 C -0.062 4.062 21 N -0.314 5.314 22 N -0.126 5.126 23 N -0.273 5.273 24 C 0.073 3.927 25 C 0.054 3.946 26 C -0.109 4.109 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.332 0.668 32 H 0.415 0.585 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.202 0.798 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.126 0.874 48 H 0.060 0.940 49 H 0.039 0.961 50 H 0.062 0.938 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -4.636 -4.820 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.271 4.271 4 N -0.236 5.236 5 Si 0.797 3.203 6 H -0.128 1.128 7 H -0.179 1.179 8 H -0.194 1.194 9 C 0.291 3.709 10 O -0.431 6.431 11 N -0.379 5.379 12 C -0.002 4.002 13 C -0.149 4.149 14 C -0.100 4.100 15 C -0.142 4.142 16 C -0.072 4.072 17 N -0.265 5.265 18 C -0.001 4.001 19 C -0.131 4.131 20 C -0.221 4.221 21 N -0.177 5.177 22 N -0.106 5.106 23 N -0.068 5.068 24 C -0.067 4.067 25 C -0.074 4.074 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.219 0.781 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.144 0.856 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.437 -4.951 -4.979 11.763 hybrid contribution -0.506 1.394 0.943 1.757 sum -9.943 -3.556 -4.036 11.305 Atomic orbital electron populations 1.21735 0.89592 1.04635 1.03487 1.20920 0.99540 0.92434 0.97881 1.30524 0.93921 0.99570 1.03122 1.68520 1.07571 1.14663 1.32881 0.85005 0.80277 0.79740 0.75278 1.12817 1.17862 1.19404 1.20995 0.80037 0.81866 0.88010 1.90767 1.38418 1.66173 1.47708 1.45969 1.54313 1.11676 1.25925 1.21302 0.98448 0.93070 0.87392 1.21727 1.01914 0.92294 0.98997 1.21100 0.94398 0.96682 0.97849 1.21592 1.00148 0.94047 0.98460 1.22180 0.85480 1.01761 0.97744 1.61919 1.05935 1.13667 1.44934 1.20579 0.85426 1.00180 0.93903 1.22362 0.98796 0.92830 0.99095 1.23817 0.87894 1.04099 1.06299 1.75051 1.28006 1.04621 1.10066 1.78269 0.94737 1.17548 1.19999 1.47537 1.05493 1.22305 1.31426 1.22640 0.96424 0.89415 0.98191 1.22083 0.98819 0.88635 0.97851 1.21631 0.95967 0.99123 0.97976 0.93693 0.88950 0.88957 0.83532 0.85113 0.74803 0.93603 0.93334 0.90294 0.89605 0.91512 0.91050 0.89863 0.94320 0.88815 0.90504 0.86827 0.78142 0.87883 0.87625 0.85573 0.92194 0.94232 0.91911 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.95 9.02 71.98 0.65 1.60 16 2 C -0.09 0.21 2.65 -12.28 -0.03 0.18 16 3 C -0.02 -0.04 4.75 88.68 0.42 0.38 16 4 N -0.62 -5.41 11.22 24.11 0.27 -5.14 16 5 Si 0.98 -3.05 29.29 68.60 2.01 -1.04 16 6 H -0.21 1.46 7.11 99.48 0.71 2.16 16 7 H -0.25 0.31 7.11 99.48 0.71 1.01 16 8 H -0.27 -0.27 7.11 99.48 0.71 0.44 16 9 C 0.50 2.43 7.10 87.66 0.62 3.06 16 10 O -0.55 -8.83 14.32 -3.02 -0.04 -8.88 16 11 N -0.72 1.40 5.45 -463.06 -2.52 -1.12 16 12 C 0.12 -0.05 5.44 86.38 0.47 0.42 16 13 C -0.11 0.77 4.80 30.59 0.15 0.92 16 14 C -0.08 0.46 2.25 -10.71 -0.02 0.44 16 15 C -0.10 0.86 5.38 30.65 0.16 1.03 16 16 C 0.06 -0.45 5.46 86.33 0.47 0.02 16 17 N -0.54 2.70 4.65 -900.96 -4.19 -1.48 16 18 C 0.13 -0.77 5.19 85.56 0.44 -0.33 16 19 C 0.00 0.00 5.73 41.35 0.24 0.24 16 20 C -0.06 -0.36 10.83 83.73 0.91 0.54 16 21 N -0.31 -4.30 12.41 -58.25 -0.72 -5.02 16 22 N -0.13 -1.50 13.16 37.02 0.49 -1.01 16 23 N -0.27 -0.86 3.74 -355.73 -1.33 -2.19 16 24 C 0.07 -0.49 11.21 127.77 1.43 0.95 16 25 C 0.05 -0.10 5.29 86.33 0.46 0.36 16 26 C -0.11 0.23 5.08 30.65 0.16 0.39 16 27 H 0.04 -0.09 8.14 -2.39 -0.02 -0.10 16 28 H 0.09 -0.99 7.95 -2.39 -0.02 -1.01 16 29 H 0.09 -1.08 7.56 -2.39 -0.02 -1.10 16 30 H 0.15 -1.43 7.85 -2.39 -0.02 -1.45 16 31 H 0.33 1.86 8.23 -92.71 -0.76 1.09 16 32 H 0.41 -3.88 7.89 -92.71 -0.73 -4.61 16 33 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.05 0.18 6.64 -2.39 -0.02 0.16 16 35 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.08 -0.85 8.14 -2.39 -0.02 -0.86 16 40 H 0.04 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.09 -1.02 8.01 -2.39 -0.02 -1.04 16 42 H 0.08 -0.56 8.12 -2.39 -0.02 -0.58 16 43 H 0.11 -1.20 7.16 -2.39 -0.02 -1.21 16 44 H 0.20 0.13 8.06 -2.91 -0.02 0.11 16 45 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H 0.13 -1.61 7.22 -2.39 -0.02 -1.62 16 48 H 0.06 0.12 6.22 -2.39 -0.01 0.11 16 49 H 0.04 -0.09 8.14 -2.38 -0.02 -0.11 16 50 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.06 0.02 6.70 -2.39 -0.02 0.01 16 Total: 0.00 -29.14 401.08 0.68 -28.46 By element: Atomic # 1 Polarization: -12.95 SS G_CDS: 0.19 Total: -12.76 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.52 Total: 10.19 kcal Atomic # 7 Polarization: -7.97 SS G_CDS: -8.01 Total: -15.98 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.04 Total: -8.88 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.01 Total: -1.04 kcal Total: -29.14 0.68 -28.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421619592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.420 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.33 seconds