Wall clock time and date at job start Tue Mar 31 2020 23:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.52994 * 109.47626 * 120.00465 * 2 1 3 5 5 C 1.53005 * 109.47216 * 59.99854 * 4 2 1 6 6 C 1.52999 * 109.47072 * 60.00043 * 5 4 2 7 7 C 1.53002 * 109.47370 * 300.00555 * 6 5 4 8 8 C 1.52998 * 109.47225 * 59.99714 * 7 6 5 9 9 C 1.53003 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46649 * 294.65204 * 9 8 7 11 11 C 1.36935 * 119.99709 * 184.97585 * 10 9 8 12 12 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99750 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99957 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46788 * 90.00490 * 15 13 11 17 17 H 1.48497 * 109.47097 * 210.00180 * 15 13 11 18 18 H 1.48498 * 109.47253 * 330.00839 * 15 13 11 19 19 N 1.46495 * 109.47435 * 60.00289 * 8 7 6 20 20 C 1.34779 * 120.00342 * 184.32074 * 19 8 7 21 21 O 1.21281 * 119.99767 * 354.58622 * 20 19 8 22 22 C 1.50700 * 120.00123 * 174.58296 * 20 19 8 23 23 C 1.53005 * 109.47025 * 180.02562 * 22 20 19 24 24 C 1.50691 * 109.46921 * 180.02562 * 23 22 20 25 25 C 1.35351 * 126.91383 * 85.00020 * 24 23 22 26 26 N 1.33773 * 106.49925 * 179.97438 * 25 24 23 27 27 N 1.28634 * 108.88609 * 359.97438 * 26 25 24 28 28 N 1.28722 * 110.17701 * 359.75649 * 27 26 25 29 29 H 0.97001 * 125.86755 * 180.23633 * 28 27 26 30 30 H 1.09001 * 109.47047 * 299.99668 * 1 2 3 31 31 H 1.09002 * 109.47475 * 59.99768 * 1 2 3 32 32 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46798 * 300.00019 * 4 2 1 34 34 H 1.08996 * 109.47814 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47481 * 180.02562 * 5 4 2 36 36 H 1.09008 * 109.46904 * 300.00509 * 5 4 2 37 37 H 1.09007 * 109.46911 * 59.99896 * 6 5 4 38 38 H 1.08993 * 109.47158 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.47104 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.46543 * 299.99738 * 7 6 5 41 41 H 1.08999 * 109.47095 * 54.65208 * 9 8 7 42 42 H 1.08999 * 109.47240 * 174.65894 * 9 8 7 43 43 H 0.97000 * 120.00211 * 4.97698 * 10 9 8 44 44 H 0.96998 * 119.99810 * 180.02562 * 14 13 11 45 45 H 0.96998 * 119.99901 * 4.31844 * 19 8 7 46 46 H 1.09005 * 109.46887 * 299.99958 * 22 20 19 47 47 H 1.08998 * 109.46722 * 59.99715 * 22 20 19 48 48 H 1.08995 * 109.46827 * 300.00400 * 23 22 20 49 49 H 1.08999 * 109.46980 * 60.00122 * 23 22 20 50 50 H 1.08003 * 126.75017 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5301 -2.1637 -1.2495 8 6 2.0400 -0.7212 -1.2494 9 6 1.5295 0.0004 -2.4983 10 7 2.1197 -0.6118 -3.6913 11 6 1.8882 -0.0669 -4.9261 12 1 1.2710 0.8143 -5.0204 13 6 2.4479 -0.6465 -6.0565 14 7 3.2006 -1.7201 -5.9414 15 14 2.1328 0.0972 -7.7409 16 1 3.1822 1.1039 -8.0416 17 1 2.1653 -0.9739 -8.7689 18 1 0.8004 0.7529 -7.7511 19 7 3.5050 -0.7211 -1.2494 20 6 4.1789 0.4428 -1.1614 21 8 3.5765 1.4953 -1.1812 22 6 5.6808 0.4365 -1.0384 23 6 6.1918 1.8763 -0.9554 24 6 7.6938 1.8699 -0.8330 25 6 8.5915 1.8030 -1.8438 26 7 9.8033 1.8257 -1.2777 27 7 9.6652 1.9021 -0.0011 28 7 8.4164 1.9365 0.3091 29 1 8.0554 1.9969 1.2074 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -0.2075 2.1391 34 1 3.1301 -0.7209 1.2494 35 1 1.8931 -2.6777 2.1392 36 1 0.4400 -2.1639 1.2491 37 1 3.1301 -2.8849 -0.0003 38 1 1.6771 -3.9128 -0.0001 39 1 1.8937 -2.6772 -2.1395 40 1 0.4401 -2.1637 -1.2494 41 1 0.4437 -0.0818 -2.5470 42 1 1.8126 1.0519 -2.4517 43 1 2.6744 -1.4030 -3.6066 44 1 3.5919 -2.1250 -6.7313 45 1 3.9900 -1.5587 -1.3128 46 1 5.9692 -0.1037 -0.1366 47 1 6.1146 -0.0538 -1.9099 48 1 5.9033 2.4167 -1.8569 49 1 5.7580 2.3660 -0.0836 50 1 8.3724 1.7432 -2.8997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481961437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:12 Heat of formation + Delta-G solvation = 50.073592 kcal Electronic energy + Delta-G solvation = -30578.422004 eV Core-core repulsion = 26642.265470 eV Total energy + Delta-G solvation = -3936.156535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.42634 -40.66349 -38.21011 -34.84914 -34.40661 -33.32610 -33.24867 -32.08316 -31.28199 -30.01984 -29.39359 -26.63244 -25.19162 -24.76828 -23.09454 -22.95528 -22.02573 -21.86684 -20.74365 -20.09296 -18.42580 -18.03090 -17.14932 -17.07779 -16.13066 -15.81072 -15.50479 -15.37111 -14.56989 -14.44375 -14.36303 -14.13679 -13.83200 -13.44938 -13.26524 -13.20865 -12.90816 -12.69758 -12.42829 -12.37617 -12.28013 -11.97413 -11.85455 -11.50579 -11.45204 -11.40296 -11.11608 -10.95881 -10.91536 -10.83214 -10.74046 -10.71511 -10.30654 -10.13628 -10.06747 -9.90864 -9.64156 -9.38768 -9.12508 -8.77048 -8.48078 -6.84208 -5.74425 -3.00171 1.38836 2.42951 2.56641 2.99383 3.44884 3.47668 3.51202 3.52142 4.31967 4.55960 4.61187 4.74042 4.82126 4.83493 4.86362 4.89613 5.13498 5.16997 5.24352 5.28603 5.30768 5.44035 5.47442 5.55190 5.61566 5.65355 5.73578 5.77124 5.79306 5.86456 5.88636 5.96646 6.05076 6.05470 6.12104 6.16904 6.17828 6.29160 6.42167 6.50113 6.52130 6.60867 6.65780 6.70090 6.92445 7.12886 7.74297 7.90112 8.30259 8.45536 8.60632 9.57051 10.15398 10.50853 11.48760 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007251 B = 0.004497 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3860.696560 B = 6224.440236 C = 9164.910779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.123 4.123 8 C 0.183 3.817 9 C 0.142 3.858 10 N -0.725 5.725 11 C -0.229 4.229 12 H 0.067 0.933 13 C -0.015 4.015 14 N -0.936 5.936 15 Si 0.903 3.097 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.707 5.707 20 C 0.523 3.477 21 O -0.535 6.535 22 C -0.138 4.138 23 C -0.031 4.031 24 C -0.002 4.002 25 C -0.044 4.044 26 N -0.266 5.266 27 N -0.089 5.089 28 N -0.392 5.392 29 H 0.446 0.554 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.020 0.980 42 H 0.045 0.955 43 H 0.381 0.619 44 H 0.253 0.747 45 H 0.396 0.604 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 0.780 18.155 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.160 4.160 8 C 0.097 3.903 9 C 0.014 3.986 10 N -0.369 5.369 11 C -0.361 4.361 12 H 0.085 0.915 13 C -0.210 4.210 14 N -0.586 5.586 15 Si 0.735 3.265 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.209 1.209 19 N -0.357 5.357 20 C 0.309 3.691 21 O -0.413 6.413 22 C -0.179 4.179 23 C -0.071 4.071 24 C -0.136 4.136 25 C -0.201 4.201 26 N -0.133 5.133 27 N -0.069 5.069 28 N -0.113 5.113 29 H 0.291 0.709 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.215 0.785 44 H 0.063 0.937 45 H 0.230 0.770 46 H 0.104 0.896 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.784 1.652 18.418 18.701 hybrid contribution -1.006 -0.382 -0.948 1.434 sum 1.778 1.270 17.470 17.606 Atomic orbital electron populations 1.21959 0.95057 1.01864 1.01703 1.21437 0.95865 1.01215 0.93426 0.88941 1.21483 1.00256 0.95382 0.97399 1.21576 1.00978 0.95770 0.97416 1.21539 1.00495 0.98791 0.94741 1.21827 1.01778 0.94235 0.98191 1.20511 0.78936 0.95513 0.95332 1.21136 0.95267 0.96887 0.85331 1.42217 1.60172 1.33376 1.01120 1.19223 1.24609 1.07977 0.84251 0.91466 1.24653 1.00615 0.98148 0.97603 1.69636 1.38022 1.22594 1.28360 0.86236 0.77726 0.77974 0.84577 1.21846 1.21905 1.20888 1.45881 1.06934 1.08551 1.74345 1.20172 0.89017 0.84045 0.75883 1.90642 1.69935 1.31009 1.49688 1.21655 0.93782 0.97821 1.04650 1.19877 0.84315 0.97048 1.05874 1.22411 0.97257 1.07702 0.86258 1.23539 0.88026 1.07233 1.01343 1.75101 1.23633 1.15761 0.98843 1.78269 0.98194 1.20074 1.10400 1.45126 1.05872 1.49789 1.10480 0.70890 0.93187 0.91976 0.92314 0.92653 0.92502 0.92753 0.91758 0.92329 0.92110 0.90325 0.90358 0.96270 0.93736 0.78548 0.93722 0.76953 0.89571 0.88008 0.87493 0.89708 0.78972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.15 37.16 0.30 -1.50 16 2 C -0.10 -1.30 1.97 -90.62 -0.18 -1.48 16 3 H 0.09 1.42 6.05 -51.93 -0.31 1.10 16 4 C -0.11 -1.15 5.29 -26.73 -0.14 -1.29 16 5 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 6 C -0.12 -1.25 5.75 -26.73 -0.15 -1.41 16 7 C -0.12 -1.67 4.36 -26.73 -0.12 -1.78 16 8 C 0.18 2.70 0.09 -131.82 -0.01 2.69 16 9 C 0.14 2.82 4.42 -4.04 -0.02 2.81 16 10 N -0.72 -17.46 5.19 -59.90 -0.31 -17.77 16 11 C -0.23 -6.33 9.99 -15.06 -0.15 -6.48 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 14 N -0.94 -27.41 13.06 55.49 0.72 -26.69 16 15 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 N -0.71 -9.69 3.48 -47.60 -0.17 -9.85 16 20 C 0.52 7.37 7.16 -10.98 -0.08 7.29 16 21 O -0.54 -9.22 12.28 5.56 0.07 -9.16 16 22 C -0.14 -1.42 5.68 -27.88 -0.16 -1.58 16 23 C -0.03 -0.30 5.07 -27.89 -0.14 -0.45 16 24 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 25 C -0.04 -0.52 11.99 -17.74 -0.21 -0.74 16 26 N -0.27 -3.72 12.41 30.24 0.38 -3.34 16 27 N -0.09 -1.12 13.38 60.35 0.81 -0.31 16 28 N -0.39 -3.57 6.98 33.54 0.23 -3.34 16 29 H 0.45 2.34 8.96 -190.39 -1.71 0.64 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 32 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.61 7.54 -51.93 -0.39 0.22 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.63 6.43 -51.92 -0.33 0.29 16 37 H 0.06 0.59 6.95 -51.93 -0.36 0.23 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.26 7.10 -51.93 -0.37 0.89 16 40 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 41 H 0.02 0.40 6.73 -51.93 -0.35 0.05 16 42 H 0.04 1.00 6.46 -51.93 -0.34 0.66 16 43 H 0.38 9.39 6.46 -40.82 -0.26 9.13 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.40 4.83 7.48 -40.82 -0.31 4.53 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.11 1.21 8.10 -51.93 -0.42 0.79 16 49 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.19 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -33.71 382.48 -8.37 -42.08 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -9.00 Total: 11.55 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.84 Total: -6.33 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 1.66 Total: -61.30 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.71 -8.37 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481961437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.157 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds