Wall clock time and date at job start Tue Mar 31 2020 23:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.52994 * 109.47626 * 120.00465 * 2 1 3 5 5 C 1.53005 * 109.47216 * 59.99854 * 4 2 1 6 6 C 1.52999 * 109.47072 * 60.00043 * 5 4 2 7 7 C 1.53002 * 109.47370 * 300.00555 * 6 5 4 8 8 C 1.52998 * 109.47225 * 59.99714 * 7 6 5 9 9 C 1.53003 * 109.47141 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46649 * 294.65204 * 9 8 7 11 11 C 1.36935 * 119.99709 * 184.97585 * 10 9 8 12 12 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99750 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99957 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46788 * 90.00490 * 15 13 11 17 17 H 1.48497 * 109.47097 * 210.00180 * 15 13 11 18 18 H 1.48498 * 109.47253 * 330.00839 * 15 13 11 19 19 N 1.46495 * 109.47435 * 60.00289 * 8 7 6 20 20 C 1.34779 * 120.00342 * 184.32074 * 19 8 7 21 21 O 1.21281 * 119.99767 * 354.58622 * 20 19 8 22 22 C 1.50700 * 120.00123 * 174.58296 * 20 19 8 23 23 C 1.53005 * 109.47025 * 180.02562 * 22 20 19 24 24 C 1.50691 * 109.46921 * 180.02562 * 23 22 20 25 25 C 1.35351 * 126.91383 * 85.00020 * 24 23 22 26 26 N 1.33773 * 106.49925 * 179.97438 * 25 24 23 27 27 N 1.28634 * 108.88609 * 359.97438 * 26 25 24 28 28 N 1.28722 * 110.17701 * 359.75649 * 27 26 25 29 29 H 0.97001 * 125.86755 * 180.23633 * 28 27 26 30 30 H 1.09001 * 109.47047 * 299.99668 * 1 2 3 31 31 H 1.09002 * 109.47475 * 59.99768 * 1 2 3 32 32 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46798 * 300.00019 * 4 2 1 34 34 H 1.08996 * 109.47814 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47481 * 180.02562 * 5 4 2 36 36 H 1.09008 * 109.46904 * 300.00509 * 5 4 2 37 37 H 1.09007 * 109.46911 * 59.99896 * 6 5 4 38 38 H 1.08993 * 109.47158 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.47104 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.46543 * 299.99738 * 7 6 5 41 41 H 1.08999 * 109.47095 * 54.65208 * 9 8 7 42 42 H 1.08999 * 109.47240 * 174.65894 * 9 8 7 43 43 H 0.97000 * 120.00211 * 4.97698 * 10 9 8 44 44 H 0.96998 * 119.99810 * 180.02562 * 14 13 11 45 45 H 0.96998 * 119.99901 * 4.31844 * 19 8 7 46 46 H 1.09005 * 109.46887 * 299.99958 * 22 20 19 47 47 H 1.08998 * 109.46722 * 59.99715 * 22 20 19 48 48 H 1.08995 * 109.46827 * 300.00400 * 23 22 20 49 49 H 1.08999 * 109.46980 * 60.00122 * 23 22 20 50 50 H 1.08003 * 126.75017 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -2.1639 1.2491 6 6 2.0400 -2.8850 -0.0003 7 6 1.5301 -2.1637 -1.2495 8 6 2.0400 -0.7212 -1.2494 9 6 1.5295 0.0004 -2.4983 10 7 2.1197 -0.6118 -3.6913 11 6 1.8882 -0.0669 -4.9261 12 1 1.2710 0.8143 -5.0204 13 6 2.4479 -0.6465 -6.0565 14 7 3.2006 -1.7201 -5.9414 15 14 2.1328 0.0972 -7.7409 16 1 3.1822 1.1039 -8.0416 17 1 2.1653 -0.9739 -8.7689 18 1 0.8004 0.7529 -7.7511 19 7 3.5050 -0.7211 -1.2494 20 6 4.1789 0.4428 -1.1614 21 8 3.5765 1.4953 -1.1812 22 6 5.6808 0.4365 -1.0384 23 6 6.1918 1.8763 -0.9554 24 6 7.6938 1.8699 -0.8330 25 6 8.5915 1.8030 -1.8438 26 7 9.8033 1.8257 -1.2777 27 7 9.6652 1.9021 -0.0011 28 7 8.4164 1.9365 0.3091 29 1 8.0554 1.9969 1.2074 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -0.2075 2.1391 34 1 3.1301 -0.7209 1.2494 35 1 1.8931 -2.6777 2.1392 36 1 0.4400 -2.1639 1.2491 37 1 3.1301 -2.8849 -0.0003 38 1 1.6771 -3.9128 -0.0001 39 1 1.8937 -2.6772 -2.1395 40 1 0.4401 -2.1637 -1.2494 41 1 0.4437 -0.0818 -2.5470 42 1 1.8126 1.0519 -2.4517 43 1 2.6744 -1.4030 -3.6066 44 1 3.5919 -2.1250 -6.7313 45 1 3.9900 -1.5587 -1.3128 46 1 5.9692 -0.1037 -0.1366 47 1 6.1146 -0.0538 -1.9099 48 1 5.9033 2.4167 -1.8569 49 1 5.7580 2.3660 -0.0836 50 1 8.3724 1.7432 -2.8997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481961437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:06 Heat of formation + Delta-G solvation = 26.757494 kcal Electronic energy + Delta-G solvation = -30579.433066 eV Core-core repulsion = 26642.265470 eV Total energy + Delta-G solvation = -3937.167596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 17.27 seconds Orbital eigenvalues (eV) -44.30657 -41.80327 -39.29992 -36.44989 -35.40093 -34.68355 -34.16265 -33.30020 -32.73469 -31.24854 -30.53117 -27.83561 -26.68336 -25.71787 -24.67631 -23.99185 -23.03983 -22.79504 -21.90267 -21.18404 -19.45105 -19.23904 -18.86908 -18.13031 -17.05399 -16.97506 -16.72080 -16.48670 -16.18090 -15.53412 -15.44708 -15.23259 -15.06395 -14.73228 -14.60897 -14.40906 -14.17215 -13.88275 -13.64653 -13.54164 -13.29483 -13.04925 -12.87705 -12.82232 -12.77114 -12.61844 -12.41586 -12.31525 -12.18942 -12.08008 -11.91264 -11.79665 -11.78543 -11.59777 -11.20558 -11.08838 -11.00820 -10.86242 -10.36985 -10.10316 -9.69669 -8.89197 -7.92422 -5.17193 0.53573 1.46437 1.47356 1.49661 1.55254 1.82878 1.88575 2.41405 2.57768 3.40393 3.47275 3.66375 3.73125 3.86650 3.88778 3.93532 4.04174 4.14064 4.21664 4.28396 4.33215 4.41304 4.45389 4.50470 4.57788 4.60815 4.67550 4.74369 4.84831 4.89168 4.96631 5.01879 5.03352 5.05946 5.17290 5.18107 5.21293 5.22396 5.29891 5.31141 5.44562 5.48758 5.50895 5.56437 5.64682 5.87703 5.99556 6.30852 6.79584 7.38560 7.40352 7.50136 8.14678 8.42533 9.30289 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007251 B = 0.004497 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3860.696560 B = 6224.440236 C = 9164.910779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.101 4.101 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.191 3.809 9 C 0.145 3.855 10 N -0.727 5.727 11 C -0.240 4.240 12 H 0.060 0.940 13 C -0.065 4.065 14 N -0.961 5.961 15 Si 0.962 3.038 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.276 1.276 19 N -0.704 5.704 20 C 0.516 3.484 21 O -0.570 6.570 22 C -0.129 4.129 23 C -0.021 4.021 24 C 0.014 3.986 25 C -0.060 4.060 26 N -0.301 5.301 27 N -0.106 5.106 28 N -0.370 5.370 29 H 0.464 0.536 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.013 0.987 42 H 0.018 0.982 43 H 0.377 0.623 44 H 0.250 0.750 45 H 0.405 0.595 46 H 0.120 0.880 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 0.087 20.250 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.155 4.155 8 C 0.104 3.896 9 C 0.017 3.983 10 N -0.370 5.370 11 C -0.372 4.372 12 H 0.078 0.922 13 C -0.258 4.258 14 N -0.612 5.612 15 Si 0.792 3.208 16 H -0.217 1.217 17 H -0.219 1.219 18 H -0.201 1.201 19 N -0.355 5.355 20 C 0.303 3.697 21 O -0.450 6.450 22 C -0.169 4.169 23 C -0.061 4.061 24 C -0.121 4.121 25 C -0.217 4.217 26 N -0.167 5.167 27 N -0.086 5.086 28 N -0.094 5.094 29 H 0.313 0.687 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.210 0.790 44 H 0.059 0.941 45 H 0.241 0.759 46 H 0.138 0.862 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.117 0.883 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.641 0.957 20.562 20.753 hybrid contribution -1.048 -0.111 -1.595 1.911 sum 1.593 0.847 18.967 19.053 Atomic orbital electron populations 1.21950 0.94527 1.02464 1.01507 1.21345 0.96289 0.99961 0.93755 0.91307 1.21443 1.00437 0.95847 0.96137 1.21559 1.01185 0.94920 0.97574 1.21512 1.01031 0.99023 0.93353 1.21746 1.01567 0.93280 0.98903 1.20344 0.79729 0.95900 0.93598 1.21180 0.94747 0.95864 0.86473 1.42279 1.60122 1.33207 1.01434 1.19492 1.24097 1.07681 0.85909 0.92185 1.25317 1.00996 0.98830 1.00638 1.69758 1.38963 1.23633 1.28867 0.85313 0.77727 0.77126 0.80657 1.21737 1.21914 1.20146 1.45884 1.06522 1.09100 1.73972 1.20840 0.90527 0.83432 0.74884 1.90636 1.71020 1.32163 1.51155 1.21628 0.90664 0.98524 1.06128 1.19754 0.83937 0.96687 1.05737 1.22275 0.96955 1.06823 0.86070 1.23836 0.87953 1.07590 1.02345 1.75075 1.24886 1.17192 0.99564 1.78201 0.99464 1.20899 1.10070 1.45097 1.04927 1.48066 1.11262 0.68724 0.91352 0.94239 0.91269 0.91307 0.92175 0.90562 0.91465 0.91440 0.90931 0.93112 0.90638 0.96892 0.96424 0.78976 0.94087 0.75944 0.86174 0.88330 0.89263 0.88276 0.78190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.15 71.98 0.59 -2.86 16 2 C -0.09 -2.36 1.97 -10.79 -0.02 -2.38 16 3 H 0.07 2.10 6.05 -2.38 -0.01 2.09 16 4 C -0.10 -1.86 5.29 30.59 0.16 -1.70 16 5 C -0.12 -1.83 5.65 30.60 0.17 -1.66 16 6 C -0.11 -2.07 5.75 30.59 0.18 -1.90 16 7 C -0.12 -3.10 4.36 30.59 0.13 -2.97 16 8 C 0.19 5.61 0.09 3.61 0.00 5.61 16 9 C 0.14 5.96 4.42 86.38 0.38 6.34 16 10 N -0.73 -35.99 5.19 -343.44 -1.78 -37.77 16 11 C -0.24 -13.52 9.99 84.04 0.84 -12.68 16 12 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 13 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 14 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 15 Si 0.96 46.48 29.55 68.60 2.03 48.51 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 17 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 N -0.70 -18.84 3.48 -422.91 -1.47 -20.31 16 20 C 0.52 14.21 7.16 87.66 0.63 14.83 16 21 O -0.57 -19.83 12.28 -3.03 -0.04 -19.87 16 22 C -0.13 -2.43 5.68 29.85 0.17 -2.26 16 23 C -0.02 -0.38 5.07 29.85 0.15 -0.23 16 24 C 0.01 0.25 6.56 41.35 0.27 0.52 16 25 C -0.06 -1.37 11.99 83.73 1.00 -0.37 16 26 N -0.30 -8.27 12.41 -58.25 -0.72 -8.99 16 27 N -0.11 -2.55 13.38 37.02 0.50 -2.06 16 28 N -0.37 -6.02 6.98 -47.79 -0.33 -6.35 16 29 H 0.46 3.64 8.96 -219.95 -1.97 1.67 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.08 6.55 -2.39 -0.02 1.07 16 32 H 0.07 1.47 4.81 -2.39 -0.01 1.45 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.09 7.54 -2.39 -0.02 1.07 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.06 6.43 -2.38 -0.02 1.05 16 37 H 0.07 1.15 6.95 -2.38 -0.02 1.13 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.63 7.10 -2.39 -0.02 1.61 16 40 H 0.08 2.01 6.43 -2.39 -0.02 2.00 16 41 H 0.01 0.56 6.73 -2.39 -0.02 0.55 16 42 H 0.02 0.83 6.46 -2.39 -0.02 0.81 16 43 H 0.38 19.05 6.46 -92.71 -0.60 18.45 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.40 9.39 7.48 -92.71 -0.69 8.70 16 46 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.09 1.99 8.10 -2.39 -0.02 1.97 16 49 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 50 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -74.21 382.48 1.31 -72.90 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -2.27 Total: 35.47 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.12 Total: -4.93 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -3.53 Total: -132.07 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -74.21 1.31 -72.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481961437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.658 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.27 seconds