Wall clock time and date at job start Tue Mar 31 2020 23:59:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08995 * 109.58621 * 2 1
4 4 C 1.53190 * 109.58826 * 239.56823 * 2 1 3
5 5 C 1.53046 * 109.31275 * 185.57730 * 4 2 1
6 6 H 1.08998 * 109.45182 * 301.35718 * 5 4 2
7 7 N 1.46494 * 109.45833 * 181.38570 * 5 4 2
8 8 C 1.34777 * 119.99781 * 154.93092 * 7 5 4
9 9 O 1.21278 * 120.00084 * 0.02562 * 8 7 5
10 10 C 1.50700 * 120.00328 * 179.97438 * 8 7 5
11 11 C 1.52998 * 109.47635 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47216 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.46715 * 179.97438 * 12 11 10
14 14 C 1.50702 * 109.46681 * 180.02562 * 13 12 11
15 15 C 1.35355 * 126.91474 * 85.00242 * 14 13 12
16 16 N 1.33771 * 106.49868 * 179.97438 * 15 14 13
17 17 N 1.28636 * 108.88169 * 359.97438 * 16 15 14
18 18 N 1.28715 * 110.18202 * 0.02562 * 17 16 15
19 19 H 0.97001 * 125.86864 * 179.97438 * 18 17 16
20 20 C 1.53046 * 109.53328 * 61.37096 * 5 4 2
21 21 C 1.53191 * 109.30983 * 298.63014 * 20 5 4
22 22 N 1.46928 * 109.58242 * 120.28335 * 2 1 3
23 23 C 1.36935 * 120.63352 * 353.37282 * 22 2 1
24 24 H 1.07996 * 119.99893 * 29.03922 * 23 22 2
25 25 C 1.38817 * 120.00418 * 209.03954 * 23 22 2
26 26 N 1.31620 * 119.99313 * 15.01327 * 25 23 22
27 27 Si 1.86792 * 120.00204 * 195.01370 * 25 23 22
28 28 H 1.48499 * 109.47360 * 90.00101 * 27 25 23
29 29 H 1.48503 * 109.47010 * 210.00080 * 27 25 23
30 30 H 1.48500 * 109.47212 * 329.99855 * 27 25 23
31 31 H 1.08998 * 109.47160 * 299.71729 * 1 2 3
32 32 H 1.09003 * 109.46769 * 59.71758 * 1 2 3
33 33 H 1.08997 * 109.46972 * 179.71566 * 1 2 3
34 34 H 1.09002 * 109.49258 * 65.63094 * 4 2 1
35 35 H 1.08999 * 109.49903 * 305.53603 * 4 2 1
36 36 H 0.97000 * 120.00152 * 334.93660 * 7 5 4
37 37 H 1.09007 * 109.46745 * 60.00427 * 10 8 7
38 38 H 1.08996 * 109.47033 * 300.00713 * 10 8 7
39 39 H 1.08997 * 109.47043 * 60.00019 * 11 10 8
40 40 H 1.09005 * 109.46664 * 300.00354 * 11 10 8
41 41 H 1.09003 * 109.46990 * 60.00707 * 12 11 10
42 42 H 1.08996 * 109.47183 * 300.00207 * 12 11 10
43 43 H 1.08997 * 109.47214 * 60.00149 * 13 12 11
44 44 H 1.09003 * 109.47307 * 299.99755 * 13 12 11
45 45 H 1.07999 * 126.74866 * 359.97438 * 15 14 13
46 46 H 1.08996 * 109.50049 * 58.58695 * 20 5 4
47 47 H 1.09001 * 109.49385 * 178.65157 * 20 5 4
48 48 H 1.09004 * 109.58633 * 174.42210 * 21 20 5
49 49 H 1.08996 * 109.59247 * 294.85174 * 21 20 5
50 50 H 0.97004 * 119.99334 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0436 -0.7310 -1.2444
5 6 3.5676 -0.8495 -1.1689
6 1 4.0061 0.1460 -1.0992
7 7 4.0653 -1.5188 -2.3733
8 6 5.3291 -1.3047 -2.7897
9 8 6.0544 -0.5582 -2.1672
10 6 5.8414 -1.9936 -4.0282
11 6 7.2937 -1.5819 -4.2772
12 6 7.8135 -2.2809 -5.5350
13 6 9.2657 -1.8685 -5.7843
14 6 9.7775 -2.5566 -7.0236
15 6 9.6315 -2.1407 -8.3034
16 7 10.2397 -3.0521 -9.0707
17 7 10.7303 -3.9711 -8.3160
18 7 10.4762 -3.7139 -7.0807
19 1 10.7401 -4.2566 -6.3212
20 6 3.9569 -1.6657 0.0658
21 6 3.4650 -0.9453 1.3250
22 7 2.0225 -0.6981 1.1954
23 6 1.1537 -1.1100 2.1704
24 1 0.1360 -1.3648 1.9142
25 6 1.5810 -1.2000 3.4881
26 7 2.7043 -0.6213 3.8565
27 14 0.5619 -2.1422 4.7382
28 1 0.9957 -3.5622 4.7613
29 1 0.7528 -1.5443 6.0841
30 1 -0.8731 -2.0691 4.3631
31 1 -0.3633 0.5094 0.8925
32 1 -0.3633 0.5182 -0.8875
33 1 -0.3633 -1.0276 -0.0051
34 1 1.7661 -0.1695 -2.1365
35 1 1.6030 -1.7270 -1.2891
36 1 3.4853 -2.1161 -2.8710
37 1 5.2300 -1.7055 -4.8834
38 1 5.7886 -3.0736 -3.8913
39 1 7.9049 -1.8703 -3.4220
40 1 7.3468 -0.5017 -4.4140
41 1 7.2023 -1.9919 -6.3901
42 1 7.7603 -3.3610 -5.3987
43 1 9.8772 -2.1570 -4.9294
44 1 9.3184 -0.7884 -5.9209
45 1 9.1239 -1.2485 -8.6389
46 1 3.4983 -2.6529 0.0087
47 1 5.0412 -1.7700 0.1058
48 1 3.6517 -1.5690 2.1993
49 1 3.9902 0.0038 1.4318
50 1 3.0027 -0.6839 4.7774
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484975732.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:59:34
Heat of formation + Delta-G solvation = 51.104128 kcal
Electronic energy + Delta-G solvation = -28177.658535 eV
Core-core repulsion = 24241.546687 eV
Total energy + Delta-G solvation = -3936.111847 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 6.71 seconds
Orbital eigenvalues (eV)
-43.70906 -39.81440 -37.79061 -36.29157 -34.57759 -33.77415 -32.79176 -32.40501
-31.34650 -29.87498 -29.04110 -26.44255 -25.61343 -24.56277 -23.38680 -22.51923
-21.95611 -21.56834 -20.80071 -20.03644 -19.19937 -18.61699 -17.01330 -16.46210
-16.31207 -16.19934 -15.80920 -15.12694 -15.02664 -14.89314 -14.48755 -14.04132
-13.92415 -13.66546 -13.32632 -13.30796 -12.98172 -12.86099 -12.62991 -12.40674
-11.97471 -11.71623 -11.62130 -11.58518 -11.24887 -11.23954 -11.12187 -11.01403
-10.94173 -10.92682 -10.90784 -10.68726 -10.32119 -10.15781 -10.06153 -9.81546
-9.74658 -9.57544 -9.33618 -8.71598 -8.43448 -6.66307 -5.78406 -3.22593
1.12102 2.14018 2.30853 2.78196 3.32299 3.37051 3.42953 3.44193
3.95776 4.19245 4.44036 4.45507 4.47397 4.68248 4.70906 4.92022
4.99991 5.07585 5.10304 5.23483 5.33013 5.36564 5.38744 5.43228
5.46613 5.53524 5.57509 5.71179 5.75831 5.87352 5.97606 6.02614
6.13102 6.24283 6.29282 6.38666 6.40110 6.41541 6.49364 6.62902
6.77011 6.88499 7.01468 7.07594 7.37289 7.66888 7.71996 7.80883
8.02798 8.40277 8.45646 9.21097 9.84636 10.41522 11.30125
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.027781 B = 0.001657 C = 0.001610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1007.653106 B =16893.300610 C =17385.782691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.170 3.830
3 H 0.027 0.973
4 C -0.133 4.133
5 C 0.150 3.850
6 H 0.080 0.920
7 N -0.726 5.726
8 C 0.507 3.493
9 O -0.542 6.542
10 C -0.141 4.141
11 C -0.104 4.104
12 C -0.115 4.115
13 C -0.050 4.050
14 C -0.004 4.004
15 C -0.050 4.050
16 N -0.266 5.266
17 N -0.086 5.086
18 N -0.391 5.391
19 H 0.448 0.552
20 C -0.146 4.146
21 C 0.174 3.826
22 N -0.587 5.587
23 C -0.251 4.251
24 H 0.070 0.930
25 C 0.002 3.998
26 N -0.903 5.903
27 Si 0.901 3.099
28 H -0.289 1.289
29 H -0.292 1.292
30 H -0.279 1.279
31 H 0.063 0.937
32 H 0.038 0.962
33 H 0.053 0.947
34 H 0.054 0.946
35 H 0.063 0.937
36 H 0.394 0.606
37 H 0.091 0.909
38 H 0.090 0.910
39 H 0.072 0.928
40 H 0.074 0.926
41 H 0.071 0.929
42 H 0.063 0.937
43 H 0.081 0.919
44 H 0.098 0.902
45 H 0.191 0.809
46 H 0.053 0.947
47 H 0.051 0.949
48 H 0.090 0.910
49 H 0.020 0.980
50 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.371 -3.996 -20.106 22.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.063 3.937
3 H 0.044 0.956
4 C -0.173 4.173
5 C 0.046 3.954
6 H 0.098 0.902
7 N -0.376 5.376
8 C 0.293 3.707
9 O -0.419 6.419
10 C -0.181 4.181
11 C -0.142 4.142
12 C -0.154 4.154
13 C -0.090 4.090
14 C -0.138 4.138
15 C -0.207 4.207
16 N -0.133 5.133
17 N -0.066 5.066
18 N -0.111 5.111
19 H 0.293 0.707
20 C -0.186 4.186
21 C 0.048 3.952
22 N -0.311 5.311
23 C -0.380 4.380
24 H 0.088 0.912
25 C -0.197 4.197
26 N -0.547 5.547
27 Si 0.732 3.268
28 H -0.216 1.216
29 H -0.218 1.218
30 H -0.205 1.205
31 H 0.082 0.918
32 H 0.057 0.943
33 H 0.072 0.928
34 H 0.072 0.928
35 H 0.081 0.919
36 H 0.227 0.773
37 H 0.109 0.891
38 H 0.108 0.892
39 H 0.091 0.909
40 H 0.093 0.907
41 H 0.090 0.910
42 H 0.081 0.919
43 H 0.099 0.901
44 H 0.117 0.883
45 H 0.208 0.792
46 H 0.072 0.928
47 H 0.070 0.930
48 H 0.108 0.892
49 H 0.038 0.962
50 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 10.590 -4.343 -20.600 23.566
hybrid contribution -1.083 -0.479 1.724 2.091
sum 9.507 -4.822 -18.876 21.678
Atomic orbital electron populations
1.21796 0.95779 1.01364 1.00361 1.20363 0.93071 0.93587 0.86681
0.95573 1.22370 0.93792 1.01564 0.99595 1.21031 0.94185 0.96723
0.83415 0.90179 1.46369 1.13442 1.48572 1.29250 1.20632 0.81996
0.81972 0.86146 1.90712 1.56192 1.37534 1.57498 1.21678 0.98106
1.01623 0.96741 1.21325 0.94281 1.01383 0.97206 1.21635 0.94248
1.00686 0.98787 1.20235 0.96596 1.00621 0.91546 1.22423 1.01543
0.90445 0.99352 1.23458 1.05545 1.02544 0.89119 1.75111 1.10819
1.00713 1.26707 1.78309 1.20474 1.20970 0.86850 1.45162 1.38034
1.18402 1.09540 0.70699 1.22560 0.99610 0.99549 0.96896 1.20764
0.83218 0.97303 0.93952 1.44168 1.02988 1.64991 1.18941 1.19187
0.94827 1.37779 0.86235 0.91196 1.25103 0.97848 0.99743 0.96993
1.70020 1.23335 1.44481 1.16889 0.86305 0.79821 0.79726 0.80986
1.21566 1.21803 1.20463 0.91842 0.94314 0.92809 0.92756 0.91866
0.77260 0.89102 0.89200 0.90910 0.90706 0.91032 0.91861 0.90056
0.88321 0.79218 0.92792 0.93008 0.89159 0.96218 0.93657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.43 7.94 37.16 0.30 -2.13 16
2 C 0.17 3.39 3.50 -67.60 -0.24 3.15 16
3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
4 C -0.13 -2.14 4.84 -26.61 -0.13 -2.27 16
5 C 0.15 2.50 2.42 -67.89 -0.16 2.34 16
6 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16
7 N -0.73 -9.30 5.08 -53.76 -0.27 -9.57 16
8 C 0.51 6.55 7.79 -10.99 -0.09 6.46 16
9 O -0.54 -9.40 15.64 5.56 0.09 -9.32 16
10 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16
11 C -0.10 -0.74 4.50 -26.73 -0.12 -0.86 16
12 C -0.12 -0.53 5.20 -26.73 -0.14 -0.67 16
13 C -0.05 -0.20 5.78 -27.88 -0.16 -0.36 16
14 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16
15 C -0.05 -0.37 11.99 -17.73 -0.21 -0.58 16
16 N -0.27 -2.83 12.41 30.24 0.38 -2.46 16
17 N -0.09 -0.84 13.38 60.35 0.81 -0.03 16
18 N -0.39 -2.40 6.98 33.54 0.23 -2.17 16
19 H 0.45 1.18 8.96 -190.40 -1.71 -0.53 16
20 C -0.15 -2.82 5.65 -26.61 -0.15 -2.97 16
21 C 0.17 4.14 5.29 -3.71 -0.02 4.12 16
22 N -0.59 -14.11 2.99 -164.77 -0.49 -14.60 16
23 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16
24 H 0.07 1.78 6.21 -52.49 -0.33 1.45 16
25 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16
26 N -0.90 -25.91 11.14 55.49 0.62 -25.29 16
27 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16
28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
31 H 0.06 1.24 7.62 -51.93 -0.40 0.85 16
32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16
34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
36 H 0.39 3.85 8.60 -40.82 -0.35 3.50 16
37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16
40 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16
41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
42 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16
44 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16
45 H 0.19 0.90 8.06 -52.49 -0.42 0.47 16
46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16
47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
48 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16
49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
50 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
LS Contribution 400.12 15.07 6.03 6.03
Total: -1.00 -34.19 400.12 -9.45 -43.64
By element:
Atomic # 1 Polarization: 9.59 SS G_CDS: -9.77 Total: -0.18 kcal
Atomic # 6 Polarization: -0.31 SS G_CDS: -2.04 Total: -2.34 kcal
Atomic # 7 Polarization: -55.38 SS G_CDS: 1.27 Total: -54.12 kcal
Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.32 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -34.19 -9.45 -43.64 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484975732.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.740 kcal
(2) G-P(sol) polarization free energy of solvation -34.188 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.71 seconds