Wall clock time and date at job start Tue Mar 31 2020 23:59:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08995 * 109.58621 * 2 1
4 4 C 1.53190 * 109.58826 * 239.56823 * 2 1 3
5 5 C 1.53046 * 109.31275 * 185.57730 * 4 2 1
6 6 H 1.08998 * 109.45182 * 301.35718 * 5 4 2
7 7 N 1.46494 * 109.45833 * 181.38570 * 5 4 2
8 8 C 1.34777 * 119.99781 * 154.93092 * 7 5 4
9 9 O 1.21278 * 120.00084 * 0.02562 * 8 7 5
10 10 C 1.50700 * 120.00328 * 179.97438 * 8 7 5
11 11 C 1.52998 * 109.47635 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47216 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.46715 * 179.97438 * 12 11 10
14 14 C 1.50702 * 109.46681 * 180.02562 * 13 12 11
15 15 C 1.35355 * 126.91474 * 85.00242 * 14 13 12
16 16 N 1.33771 * 106.49868 * 179.97438 * 15 14 13
17 17 N 1.28636 * 108.88169 * 359.97438 * 16 15 14
18 18 N 1.28715 * 110.18202 * 0.02562 * 17 16 15
19 19 H 0.97001 * 125.86864 * 179.97438 * 18 17 16
20 20 C 1.53046 * 109.53328 * 61.37096 * 5 4 2
21 21 C 1.53191 * 109.30983 * 298.63014 * 20 5 4
22 22 N 1.46928 * 109.58242 * 120.28335 * 2 1 3
23 23 C 1.36935 * 120.63352 * 353.37282 * 22 2 1
24 24 H 1.07996 * 119.99893 * 29.03922 * 23 22 2
25 25 C 1.38817 * 120.00418 * 209.03954 * 23 22 2
26 26 N 1.31620 * 119.99313 * 15.01327 * 25 23 22
27 27 Si 1.86792 * 120.00204 * 195.01370 * 25 23 22
28 28 H 1.48499 * 109.47360 * 90.00101 * 27 25 23
29 29 H 1.48503 * 109.47010 * 210.00080 * 27 25 23
30 30 H 1.48500 * 109.47212 * 329.99855 * 27 25 23
31 31 H 1.08998 * 109.47160 * 299.71729 * 1 2 3
32 32 H 1.09003 * 109.46769 * 59.71758 * 1 2 3
33 33 H 1.08997 * 109.46972 * 179.71566 * 1 2 3
34 34 H 1.09002 * 109.49258 * 65.63094 * 4 2 1
35 35 H 1.08999 * 109.49903 * 305.53603 * 4 2 1
36 36 H 0.97000 * 120.00152 * 334.93660 * 7 5 4
37 37 H 1.09007 * 109.46745 * 60.00427 * 10 8 7
38 38 H 1.08996 * 109.47033 * 300.00713 * 10 8 7
39 39 H 1.08997 * 109.47043 * 60.00019 * 11 10 8
40 40 H 1.09005 * 109.46664 * 300.00354 * 11 10 8
41 41 H 1.09003 * 109.46990 * 60.00707 * 12 11 10
42 42 H 1.08996 * 109.47183 * 300.00207 * 12 11 10
43 43 H 1.08997 * 109.47214 * 60.00149 * 13 12 11
44 44 H 1.09003 * 109.47307 * 299.99755 * 13 12 11
45 45 H 1.07999 * 126.74866 * 359.97438 * 15 14 13
46 46 H 1.08996 * 109.50049 * 58.58695 * 20 5 4
47 47 H 1.09001 * 109.49385 * 178.65157 * 20 5 4
48 48 H 1.09004 * 109.58633 * 174.42210 * 21 20 5
49 49 H 1.08996 * 109.59247 * 294.85174 * 21 20 5
50 50 H 0.97004 * 119.99334 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0436 -0.7310 -1.2444
5 6 3.5676 -0.8495 -1.1689
6 1 4.0061 0.1460 -1.0992
7 7 4.0653 -1.5188 -2.3733
8 6 5.3291 -1.3047 -2.7897
9 8 6.0544 -0.5582 -2.1672
10 6 5.8414 -1.9936 -4.0282
11 6 7.2937 -1.5819 -4.2772
12 6 7.8135 -2.2809 -5.5350
13 6 9.2657 -1.8685 -5.7843
14 6 9.7775 -2.5566 -7.0236
15 6 9.6315 -2.1407 -8.3034
16 7 10.2397 -3.0521 -9.0707
17 7 10.7303 -3.9711 -8.3160
18 7 10.4762 -3.7139 -7.0807
19 1 10.7401 -4.2566 -6.3212
20 6 3.9569 -1.6657 0.0658
21 6 3.4650 -0.9453 1.3250
22 7 2.0225 -0.6981 1.1954
23 6 1.1537 -1.1100 2.1704
24 1 0.1360 -1.3648 1.9142
25 6 1.5810 -1.2000 3.4881
26 7 2.7043 -0.6213 3.8565
27 14 0.5619 -2.1422 4.7382
28 1 0.9957 -3.5622 4.7613
29 1 0.7528 -1.5443 6.0841
30 1 -0.8731 -2.0691 4.3631
31 1 -0.3633 0.5094 0.8925
32 1 -0.3633 0.5182 -0.8875
33 1 -0.3633 -1.0276 -0.0051
34 1 1.7661 -0.1695 -2.1365
35 1 1.6030 -1.7270 -1.2891
36 1 3.4853 -2.1161 -2.8710
37 1 5.2300 -1.7055 -4.8834
38 1 5.7886 -3.0736 -3.8913
39 1 7.9049 -1.8703 -3.4220
40 1 7.3468 -0.5017 -4.4140
41 1 7.2023 -1.9919 -6.3901
42 1 7.7603 -3.3610 -5.3987
43 1 9.8772 -2.1570 -4.9294
44 1 9.3184 -0.7884 -5.9209
45 1 9.1239 -1.2485 -8.6389
46 1 3.4983 -2.6529 0.0087
47 1 5.0412 -1.7700 0.1058
48 1 3.6517 -1.5690 2.1993
49 1 3.9902 0.0038 1.4318
50 1 3.0027 -0.6839 4.7774
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484975732.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:59:32
Heat of formation + Delta-G solvation = 27.182479 kcal
Electronic energy + Delta-G solvation = -28178.695855 eV
Core-core repulsion = 24241.546687 eV
Total energy + Delta-G solvation = -3937.149168 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-44.25550 -40.96282 -39.28435 -36.85486 -36.00128 -34.35739 -34.20664 -33.42369
-32.82074 -31.34034 -29.88200 -27.96546 -26.82817 -25.82940 -23.98664 -23.76333
-23.03734 -22.30845 -21.81767 -21.30963 -20.71039 -19.13727 -18.38392 -17.78188
-17.24217 -17.00842 -16.85039 -16.70970 -15.80074 -15.69318 -15.51888 -15.40499
-15.10705 -15.02441 -14.73677 -14.54880 -14.38772 -13.68201 -13.53749 -13.33077
-13.05995 -12.92928 -12.72806 -12.64660 -12.62326 -12.50111 -12.37115 -12.19787
-12.07283 -12.05313 -11.83351 -11.78121 -11.71186 -11.57713 -11.48303 -11.39084
-11.28959 -10.69960 -10.54625 -10.08992 -9.92563 -8.64428 -7.83002 -5.29598
0.60892 1.47840 1.48810 1.56390 1.57449 1.78145 1.91650 2.32107
2.53028 3.33007 3.51294 3.60243 3.75339 3.85482 3.94296 4.01063
4.06968 4.09717 4.21861 4.29271 4.41021 4.42298 4.54564 4.62130
4.62675 4.69169 4.74300 4.77591 4.82924 4.87380 4.94169 4.97311
5.01766 5.09628 5.13909 5.16094 5.18774 5.24816 5.40516 5.40726
5.50374 5.53466 5.56523 5.65898 5.72364 5.73916 6.01466 6.43692
6.71932 7.17815 7.42656 7.45535 7.89851 8.42434 9.24189
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.027781 B = 0.001657 C = 0.001610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1007.653106 B =16893.300610 C =17385.782691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.157 3.843
3 H 0.009 0.991
4 C -0.117 4.117
5 C 0.161 3.839
6 H 0.052 0.948
7 N -0.715 5.715
8 C 0.501 3.499
9 O -0.593 6.593
10 C -0.131 4.131
11 C -0.101 4.101
12 C -0.105 4.105
13 C -0.046 4.046
14 C 0.012 3.988
15 C -0.061 4.061
16 N -0.306 5.306
17 N -0.120 5.120
18 N -0.378 5.378
19 H 0.461 0.539
20 C -0.129 4.129
21 C 0.181 3.819
22 N -0.602 5.602
23 C -0.247 4.247
24 H 0.081 0.919
25 C -0.058 4.058
26 N -0.942 5.942
27 Si 0.964 3.036
28 H -0.288 1.288
29 H -0.301 1.301
30 H -0.264 1.264
31 H 0.038 0.962
32 H 0.077 0.923
33 H 0.055 0.945
34 H 0.089 0.911
35 H 0.075 0.925
36 H 0.415 0.585
37 H 0.121 0.879
38 H 0.113 0.887
39 H 0.056 0.944
40 H 0.062 0.938
41 H 0.081 0.919
42 H 0.069 0.931
43 H 0.091 0.909
44 H 0.108 0.892
45 H 0.213 0.787
46 H 0.060 0.940
47 H 0.043 0.957
48 H 0.055 0.945
49 H -0.015 1.015
50 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.808 -5.158 -22.544 24.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.051 3.949
3 H 0.027 0.973
4 C -0.156 4.156
5 C 0.056 3.944
6 H 0.070 0.930
7 N -0.366 5.366
8 C 0.289 3.711
9 O -0.473 6.473
10 C -0.170 4.170
11 C -0.139 4.139
12 C -0.143 4.143
13 C -0.086 4.086
14 C -0.123 4.123
15 C -0.219 4.219
16 N -0.172 5.172
17 N -0.099 5.099
18 N -0.101 5.101
19 H 0.310 0.690
20 C -0.169 4.169
21 C 0.055 3.945
22 N -0.326 5.326
23 C -0.377 4.377
24 H 0.098 0.902
25 C -0.253 4.253
26 N -0.589 5.589
27 Si 0.793 3.207
28 H -0.215 1.215
29 H -0.228 1.228
30 H -0.189 1.189
31 H 0.057 0.943
32 H 0.096 0.904
33 H 0.074 0.926
34 H 0.107 0.893
35 H 0.094 0.906
36 H 0.252 0.748
37 H 0.139 0.861
38 H 0.131 0.869
39 H 0.074 0.926
40 H 0.081 0.919
41 H 0.099 0.901
42 H 0.088 0.912
43 H 0.110 0.890
44 H 0.126 0.874
45 H 0.229 0.771
46 H 0.079 0.921
47 H 0.062 0.938
48 H 0.074 0.926
49 H 0.003 0.997
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 9.001 -5.556 -23.102 25.409
hybrid contribution -0.589 -0.021 2.498 2.566
sum 8.412 -5.578 -20.604 22.944
Atomic orbital electron populations
1.21713 0.93900 1.01700 1.01102 1.20666 0.94723 0.92882 0.86644
0.97290 1.22161 0.92671 1.02138 0.98629 1.20588 0.94822 0.95079
0.83936 0.93014 1.46116 1.14040 1.48557 1.27889 1.21636 0.81231
0.81139 0.87069 1.90704 1.57399 1.39830 1.59373 1.21733 0.98444
1.02242 0.94618 1.21274 0.93919 1.00948 0.97800 1.21524 0.94385
1.00727 0.97644 1.20288 0.96440 1.00967 0.90894 1.22656 1.00381
0.89832 0.99477 1.23959 1.05507 1.02912 0.89541 1.75063 1.12166
1.01851 1.28113 1.78246 1.21928 1.21654 0.88079 1.45207 1.37167
1.18524 1.09195 0.69047 1.22289 0.98855 0.99544 0.96226 1.20470
0.83673 0.95387 0.95003 1.44424 1.02598 1.65683 1.19941 1.19575
0.95346 1.36148 0.86645 0.90159 1.25876 0.99118 1.01259 0.99039
1.70203 1.25344 1.46655 1.16683 0.85298 0.79115 0.78091 0.78171
1.21491 1.22819 1.18861 0.94283 0.90414 0.92582 0.89264 0.90619
0.74838 0.86132 0.86865 0.92562 0.91894 0.90082 0.91178 0.89044
0.87391 0.77078 0.92108 0.93843 0.92650 0.99708 0.94479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.25 7.94 71.98 0.57 -3.68 16
2 C 0.16 6.09 3.50 44.97 0.16 6.24 16
3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
4 C -0.12 -3.41 4.84 30.67 0.15 -3.26 16
5 C 0.16 5.18 2.42 45.02 0.11 5.29 16
6 H 0.05 1.99 7.58 -2.39 -0.02 1.98 16
7 N -0.71 -16.29 5.08 -442.40 -2.25 -18.54 16
8 C 0.50 11.89 7.79 87.66 0.68 12.57 16
9 O -0.59 -20.45 15.64 -3.02 -0.05 -20.50 16
10 C -0.13 -1.55 5.70 29.85 0.17 -1.38 16
11 C -0.10 -1.18 4.50 30.59 0.14 -1.04 16
12 C -0.10 -0.60 5.20 30.59 0.16 -0.44 16
13 C -0.05 -0.24 5.78 29.85 0.17 -0.07 16
14 C 0.01 0.11 6.56 41.36 0.27 0.38 16
15 C -0.06 -0.82 11.99 83.73 1.00 0.18 16
16 N -0.31 -6.35 12.41 -58.25 -0.72 -7.07 16
17 N -0.12 -2.28 13.38 37.02 0.50 -1.78 16
18 N -0.38 -4.08 6.98 -47.79 -0.33 -4.42 16
19 H 0.46 1.67 8.96 -219.96 -1.97 -0.31 16
20 C -0.13 -5.02 5.65 30.67 0.17 -4.85 16
21 C 0.18 9.03 5.29 86.36 0.46 9.49 16
22 N -0.60 -29.33 2.99 -675.22 -2.02 -31.35 16
23 C -0.25 -13.01 8.60 84.04 0.72 -12.29 16
24 H 0.08 4.01 6.21 -2.91 -0.02 3.99 16
25 C -0.06 -3.24 4.96 84.86 0.42 -2.82 16
26 N -0.94 -56.51 11.14 21.65 0.24 -56.26 16
27 Si 0.96 44.48 29.58 68.60 2.03 46.51 16
28 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
29 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
30 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16
31 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16
32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
33 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16
34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
36 H 0.41 6.26 8.60 -92.71 -0.80 5.46 16
37 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16
38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
39 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16
40 H 0.06 0.90 8.10 -2.38 -0.02 0.88 16
41 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16
42 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16
43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16
44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16
45 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16
46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
48 H 0.06 3.12 6.06 -2.38 -0.01 3.11 16
49 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16
50 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16
Total: -1.00 -79.57 400.12 0.93 -78.64
By element:
Atomic # 1 Polarization: 12.25 SS G_CDS: -1.82 Total: 10.43 kcal
Atomic # 6 Polarization: -1.02 SS G_CDS: 5.36 Total: 4.34 kcal
Atomic # 7 Polarization: -114.84 SS G_CDS: -4.59 Total: -119.42 kcal
Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal
Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal
Total: -79.57 0.93 -78.64 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484975732.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.821 kcal
(2) G-P(sol) polarization free energy of solvation -79.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds