Wall clock time and date at job start Wed Apr 1 2020 01:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47032 * 2 1 4 4 C 1.50695 * 109.47002 * 120.00368 * 2 1 3 5 5 O 1.21275 * 120.00103 * 119.99840 * 4 2 1 6 6 N 1.34775 * 119.99795 * 299.99783 * 4 2 1 7 7 C 1.46498 * 120.00107 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47542 * 179.97438 * 7 6 4 9 9 N 1.46899 * 109.47218 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99712 * 170.00213 * 9 8 7 11 11 C 1.53237 * 109.33805 * 172.74361 * 10 9 8 12 12 N 1.47079 * 108.52132 * 53.83315 * 11 10 9 13 13 C 1.36941 * 120.88448 * 128.78817 * 12 11 10 14 14 H 1.07997 * 119.99918 * 206.58402 * 13 12 11 15 15 C 1.38807 * 119.99583 * 26.58782 * 13 12 11 16 16 N 1.31618 * 120.00188 * 17.02141 * 15 13 12 17 17 Si 1.86799 * 119.99686 * 197.01988 * 15 13 12 18 18 H 1.48497 * 109.47556 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47149 * 120.00406 * 17 15 13 20 20 H 1.48503 * 109.47120 * 239.99923 * 17 15 13 21 21 C 1.47083 * 118.23330 * 308.81493 * 12 11 10 22 22 C 1.46891 * 110.99901 * 45.70069 * 9 8 7 23 23 C 1.50701 * 109.47113 * 240.00081 * 2 1 3 24 24 C 1.39878 * 126.03976 * 300.02665 * 23 2 1 25 25 N 1.30835 * 108.20152 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.20690 * 359.97438 * 25 24 23 27 27 C 1.46496 * 126.03771 * 180.02562 * 26 25 24 28 28 C 1.34951 * 107.92568 * 359.75962 * 26 25 24 29 29 H 1.08999 * 109.47595 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47082 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.46926 * 59.99652 * 1 2 3 32 32 H 0.97001 * 120.00420 * 359.97438 * 6 4 2 33 33 H 1.09008 * 109.47306 * 60.00001 * 7 6 4 34 34 H 1.08994 * 109.47165 * 300.00070 * 7 6 4 35 35 H 1.09008 * 109.46529 * 59.99881 * 8 7 6 36 36 H 1.08994 * 109.47237 * 300.00381 * 8 7 6 37 37 H 1.09004 * 109.49329 * 52.78786 * 10 9 8 38 38 H 1.08999 * 109.49244 * 292.70731 * 10 9 8 39 39 H 1.09002 * 109.62613 * 173.53722 * 11 10 9 40 40 H 1.08998 * 109.63440 * 293.92450 * 11 10 9 41 41 H 0.97006 * 119.99914 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.62421 * 170.89529 * 21 12 11 43 43 H 1.09004 * 109.62775 * 291.46820 * 21 12 11 44 44 H 1.09002 * 109.49547 * 67.29328 * 22 9 8 45 45 H 1.08995 * 109.52035 * 307.22723 * 22 9 8 46 46 H 1.07998 * 125.89549 * 0.02562 * 24 23 2 47 47 H 1.08995 * 109.47397 * 89.97721 * 27 26 25 48 48 H 1.09002 * 109.47170 * 209.97897 * 27 26 25 49 49 H 1.09002 * 109.46964 * 329.97581 * 27 26 25 50 50 H 1.07998 * 126.12702 * 180.23935 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1954 -0.9403 3.6506 8 6 1.6859 -0.2188 4.8999 9 7 2.1755 -0.9114 6.0993 10 6 1.9091 -0.1215 7.3089 11 6 2.2672 -0.9517 8.5462 12 7 3.6522 -1.4261 8.4057 13 6 4.5649 -1.2377 9.4091 14 1 5.6181 -1.1790 9.1772 15 6 4.1364 -1.1224 10.7243 16 7 2.9270 -1.5189 11.0596 17 14 5.2762 -0.4043 12.0184 18 1 6.5703 -0.0372 11.3895 19 1 4.6528 0.8066 12.6102 20 1 5.5114 -1.4111 13.0844 21 6 4.0312 -2.1076 7.1586 22 6 3.6037 -1.2320 5.9760 23 6 2.0323 -0.7104 -1.2305 24 6 1.7731 -2.0407 -1.5762 25 7 2.3768 -2.2937 -2.7090 26 7 3.0399 -1.1305 -3.1209 27 6 3.8385 -0.9794 -4.3397 28 6 2.8083 -0.1720 -2.1996 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1494 0.5389 2.5436 33 1 3.2855 -0.9399 3.6505 34 1 1.8325 -1.9681 3.6508 35 1 0.5958 -0.2189 4.9002 36 1 2.0491 0.8088 4.8996 37 1 0.8530 0.1459 7.3435 38 1 2.5139 0.7852 7.2917 39 1 2.1808 -0.3332 9.4396 40 1 1.5915 -1.8034 8.6238 41 1 2.6277 -1.4386 11.9789 42 1 5.1112 -2.2534 7.1348 43 1 3.5273 -3.0724 7.1010 44 1 4.1849 -0.3098 5.9773 45 1 3.7771 -1.7697 5.0439 46 1 1.1767 -2.7382 -1.0068 47 1 3.1972 -0.6455 -5.1553 48 1 4.6241 -0.2430 -4.1704 49 1 4.2886 -1.9374 -4.6002 50 1 3.1784 0.8421 -2.2289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490514838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:24 Heat of formation + Delta-G solvation = 80.486246 kcal Electronic energy + Delta-G solvation = -28552.679598 eV Core-core repulsion = 24617.841855 eV Total energy + Delta-G solvation = -3934.837743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.54924 -39.74525 -38.24857 -35.44619 -34.69770 -33.91986 -32.83911 -31.34366 -30.21802 -29.72892 -28.53511 -26.81621 -26.05319 -24.44343 -23.49884 -22.47307 -21.50735 -21.29466 -20.98826 -19.80255 -19.07646 -17.40399 -16.94170 -16.69246 -16.00729 -15.73157 -15.56320 -15.02186 -14.78713 -14.66171 -14.37278 -14.21563 -13.98701 -13.62269 -13.53815 -13.30957 -13.23158 -13.14258 -12.97487 -12.86595 -12.60184 -12.37007 -12.01281 -11.84810 -11.61918 -11.37402 -11.29712 -11.01871 -10.74507 -10.72449 -10.44929 -10.28098 -10.05217 -9.86444 -9.72811 -9.60990 -9.57168 -9.06786 -8.63780 -8.49776 -7.85343 -6.65141 -5.76902 -3.17704 1.63963 2.27032 2.53078 2.60908 3.16528 3.37643 3.45569 3.47894 4.17647 4.39945 4.49390 4.51794 4.55857 4.69372 4.75765 4.82788 4.90729 4.99146 5.02934 5.12919 5.16495 5.37367 5.40398 5.42115 5.44991 5.53784 5.59677 5.73242 5.84608 5.91073 5.92037 5.96731 6.05809 6.15649 6.24033 6.30515 6.40059 6.42447 6.54333 6.70627 6.72943 6.95756 7.24627 7.41123 7.48460 7.56632 7.64111 7.70359 7.82793 8.18839 8.44818 9.22797 9.86192 10.44767 11.32037 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.001806 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.940126 B =15502.205660 C =15968.869956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 H 0.099 0.901 4 C 0.515 3.485 5 O -0.528 6.528 6 N -0.730 5.730 7 C 0.116 3.884 8 C 0.045 3.955 9 N -0.528 5.528 10 C 0.037 3.963 11 C 0.178 3.822 12 N -0.596 5.596 13 C -0.250 4.250 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.148 3.852 22 C 0.035 3.965 23 C -0.217 4.217 24 C 0.082 3.918 25 N -0.301 5.301 26 N -0.380 5.380 27 C 0.103 3.897 28 C 0.059 3.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.069 0.931 46 H 0.179 0.821 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 7.987 -28.386 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.117 0.883 4 C 0.300 3.700 5 O -0.404 6.404 6 N -0.383 5.383 7 C -0.008 4.008 8 C -0.084 4.084 9 N -0.253 5.253 10 C -0.092 4.092 11 C 0.051 3.949 12 N -0.319 5.319 13 C -0.380 4.380 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.021 3.979 22 C -0.094 4.094 23 C -0.229 4.229 24 C -0.105 4.105 25 N -0.122 5.122 26 N -0.162 5.162 27 C -0.038 4.038 28 C -0.087 4.087 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.196 0.804 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.666 5.942 -29.282 30.241 hybrid contribution 0.590 2.224 1.368 2.677 sum -4.075 8.166 -27.913 29.367 Atomic orbital electron populations 1.21768 0.92345 1.03053 1.02508 1.19503 0.97008 0.99184 0.89437 0.88263 1.20579 0.80310 0.84857 0.84264 1.90729 1.37083 1.25966 1.86588 1.45992 1.54185 1.32253 1.05834 1.21547 0.99533 0.97006 0.82680 1.22254 1.00475 0.95557 0.90126 1.62026 1.17498 1.44596 1.01213 1.22917 0.98993 0.95525 0.91780 1.20859 0.84996 0.95849 0.93153 1.44137 1.08421 1.64999 1.14346 1.19246 0.89303 1.43628 0.85782 0.91594 1.25022 0.97038 1.00773 0.96999 1.70041 1.18441 1.48914 1.17440 0.86228 0.80222 0.78644 0.81720 1.20339 1.21621 1.21717 1.20990 0.97587 0.93519 0.85770 1.22789 0.87286 0.99291 1.00071 1.19421 1.09025 0.95533 0.98942 1.23622 0.98213 0.95597 0.93029 1.77383 1.13576 1.05661 1.15599 1.48388 1.40375 1.08215 1.19174 1.21823 0.94333 1.04135 0.83525 1.22226 0.99870 0.95644 0.90961 0.91851 0.91887 0.91427 0.76850 0.91061 0.90514 0.90676 0.95037 0.92054 0.95605 0.89297 0.95481 0.93691 0.92600 0.95543 0.95399 0.91236 0.80441 0.90888 0.89583 0.89308 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.98 37.16 0.33 -0.48 16 2 C -0.03 -0.22 3.09 -92.92 -0.29 -0.51 16 3 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 4 C 0.51 5.78 7.11 -10.99 -0.08 5.70 16 5 O -0.53 -8.36 15.37 5.56 0.09 -8.27 16 6 N -0.73 -7.16 5.45 -60.30 -0.33 -7.49 16 7 C 0.12 1.46 4.93 -4.04 -0.02 1.44 16 8 C 0.04 0.58 5.38 -3.82 -0.02 0.56 16 9 N -0.53 -9.21 4.78 -234.33 -1.12 -10.33 16 10 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 11 C 0.18 4.29 5.42 -3.60 -0.02 4.27 16 12 N -0.60 -15.25 3.04 -172.01 -0.52 -15.77 16 13 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 14 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 15 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 16 N -0.90 -26.35 11.15 55.49 0.62 -25.73 16 17 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 22 C 0.03 0.63 5.04 -3.71 -0.02 0.62 16 23 C -0.22 -2.11 4.36 -105.05 -0.46 -2.57 16 24 C 0.08 0.94 10.77 -17.36 -0.19 0.76 16 25 N -0.30 -3.71 12.58 30.63 0.39 -3.32 16 26 N -0.38 -3.54 4.01 -68.17 -0.27 -3.82 16 27 C 0.10 0.50 11.47 59.84 0.69 1.19 16 28 C 0.06 0.49 11.38 -17.22 -0.20 0.30 16 29 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 30 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 2.69 7.89 -40.82 -0.32 2.37 16 33 H 0.07 1.01 6.18 -51.92 -0.32 0.69 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 2.36 6.12 -51.93 -0.32 2.05 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.06 1.18 7.95 -51.93 -0.41 0.76 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.13 5.73 -51.93 -0.30 0.83 16 46 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 47 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -35.73 399.53 -9.07 -44.80 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.36 Total: -0.80 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.54 Total: 7.97 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.24 Total: -66.46 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.73 -9.07 -44.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490514838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.282 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds