Wall clock time and date at job start Wed Apr 1 2020 01:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47032 * 2 1 4 4 C 1.50695 * 109.47002 * 120.00368 * 2 1 3 5 5 O 1.21275 * 120.00103 * 119.99840 * 4 2 1 6 6 N 1.34775 * 119.99795 * 299.99783 * 4 2 1 7 7 C 1.46498 * 120.00107 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47542 * 179.97438 * 7 6 4 9 9 N 1.46899 * 109.47218 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99712 * 170.00213 * 9 8 7 11 11 C 1.53237 * 109.33805 * 172.74361 * 10 9 8 12 12 N 1.47079 * 108.52132 * 53.83315 * 11 10 9 13 13 C 1.36941 * 120.88448 * 128.78817 * 12 11 10 14 14 H 1.07997 * 119.99918 * 206.58402 * 13 12 11 15 15 C 1.38807 * 119.99583 * 26.58782 * 13 12 11 16 16 N 1.31618 * 120.00188 * 17.02141 * 15 13 12 17 17 Si 1.86799 * 119.99686 * 197.01988 * 15 13 12 18 18 H 1.48497 * 109.47556 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47149 * 120.00406 * 17 15 13 20 20 H 1.48503 * 109.47120 * 239.99923 * 17 15 13 21 21 C 1.47083 * 118.23330 * 308.81493 * 12 11 10 22 22 C 1.46891 * 110.99901 * 45.70069 * 9 8 7 23 23 C 1.50701 * 109.47113 * 240.00081 * 2 1 3 24 24 C 1.39878 * 126.03976 * 300.02665 * 23 2 1 25 25 N 1.30835 * 108.20152 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.20690 * 359.97438 * 25 24 23 27 27 C 1.46496 * 126.03771 * 180.02562 * 26 25 24 28 28 C 1.34951 * 107.92568 * 359.75962 * 26 25 24 29 29 H 1.08999 * 109.47595 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47082 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.46926 * 59.99652 * 1 2 3 32 32 H 0.97001 * 120.00420 * 359.97438 * 6 4 2 33 33 H 1.09008 * 109.47306 * 60.00001 * 7 6 4 34 34 H 1.08994 * 109.47165 * 300.00070 * 7 6 4 35 35 H 1.09008 * 109.46529 * 59.99881 * 8 7 6 36 36 H 1.08994 * 109.47237 * 300.00381 * 8 7 6 37 37 H 1.09004 * 109.49329 * 52.78786 * 10 9 8 38 38 H 1.08999 * 109.49244 * 292.70731 * 10 9 8 39 39 H 1.09002 * 109.62613 * 173.53722 * 11 10 9 40 40 H 1.08998 * 109.63440 * 293.92450 * 11 10 9 41 41 H 0.97006 * 119.99914 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.62421 * 170.89529 * 21 12 11 43 43 H 1.09004 * 109.62775 * 291.46820 * 21 12 11 44 44 H 1.09002 * 109.49547 * 67.29328 * 22 9 8 45 45 H 1.08995 * 109.52035 * 307.22723 * 22 9 8 46 46 H 1.07998 * 125.89549 * 0.02562 * 24 23 2 47 47 H 1.08995 * 109.47397 * 89.97721 * 27 26 25 48 48 H 1.09002 * 109.47170 * 209.97897 * 27 26 25 49 49 H 1.09002 * 109.46964 * 329.97581 * 27 26 25 50 50 H 1.07998 * 126.12702 * 180.23935 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1954 -0.9403 3.6506 8 6 1.6859 -0.2188 4.8999 9 7 2.1755 -0.9114 6.0993 10 6 1.9091 -0.1215 7.3089 11 6 2.2672 -0.9517 8.5462 12 7 3.6522 -1.4261 8.4057 13 6 4.5649 -1.2377 9.4091 14 1 5.6181 -1.1790 9.1772 15 6 4.1364 -1.1224 10.7243 16 7 2.9270 -1.5189 11.0596 17 14 5.2762 -0.4043 12.0184 18 1 6.5703 -0.0372 11.3895 19 1 4.6528 0.8066 12.6102 20 1 5.5114 -1.4111 13.0844 21 6 4.0312 -2.1076 7.1586 22 6 3.6037 -1.2320 5.9760 23 6 2.0323 -0.7104 -1.2305 24 6 1.7731 -2.0407 -1.5762 25 7 2.3768 -2.2937 -2.7090 26 7 3.0399 -1.1305 -3.1209 27 6 3.8385 -0.9794 -4.3397 28 6 2.8083 -0.1720 -2.1996 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.1494 0.5389 2.5436 33 1 3.2855 -0.9399 3.6505 34 1 1.8325 -1.9681 3.6508 35 1 0.5958 -0.2189 4.9002 36 1 2.0491 0.8088 4.8996 37 1 0.8530 0.1459 7.3435 38 1 2.5139 0.7852 7.2917 39 1 2.1808 -0.3332 9.4396 40 1 1.5915 -1.8034 8.6238 41 1 2.6277 -1.4386 11.9789 42 1 5.1112 -2.2534 7.1348 43 1 3.5273 -3.0724 7.1010 44 1 4.1849 -0.3098 5.9773 45 1 3.7771 -1.7697 5.0439 46 1 1.1767 -2.7382 -1.0068 47 1 3.1972 -0.6455 -5.1553 48 1 4.6241 -0.2430 -4.1704 49 1 4.2886 -1.9374 -4.6002 50 1 3.1784 0.8421 -2.2289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490514838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:22 Heat of formation + Delta-G solvation = 53.865925 kcal Electronic energy + Delta-G solvation = -28553.833942 eV Core-core repulsion = 24617.841855 eV Total energy + Delta-G solvation = -3935.992087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22905 -40.66827 -39.71889 -36.86878 -35.42832 -35.23957 -33.54821 -33.16150 -31.79327 -30.54436 -29.81765 -27.67499 -27.30156 -25.47650 -24.88995 -24.13151 -22.64185 -22.13721 -21.80534 -20.85339 -20.50082 -18.74601 -18.12409 -17.59819 -17.04569 -16.83183 -16.62170 -16.23694 -15.98473 -15.74135 -15.57595 -15.30804 -15.20840 -15.13270 -14.85655 -14.68938 -14.38346 -14.05706 -13.81731 -13.57371 -13.35040 -13.16375 -13.08881 -13.01575 -12.96033 -12.62433 -12.51500 -12.43969 -12.33688 -12.25393 -12.01905 -11.90285 -11.49800 -11.44346 -11.40264 -10.73712 -10.59312 -10.30720 -10.01654 -9.29725 -9.26821 -8.68489 -7.87959 -5.32658 0.99564 1.46003 1.47422 1.58456 1.71895 1.76643 1.78479 2.31078 2.50765 3.12462 3.27629 3.63283 3.67376 3.81876 3.87882 4.04272 4.10154 4.25308 4.29111 4.31516 4.34576 4.41402 4.46585 4.47104 4.51568 4.57560 4.65193 4.70611 4.70773 4.86275 4.87690 4.89478 4.95216 4.98016 5.05535 5.06821 5.18828 5.22559 5.36633 5.41200 5.48265 5.61151 5.69624 5.69977 6.14342 6.20356 6.24113 6.37300 6.67218 6.76981 7.13293 7.38629 7.83353 8.37742 9.19023 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.001806 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.940126 B =15502.205660 C =15968.869956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 H 0.133 0.867 4 C 0.512 3.488 5 O -0.581 6.581 6 N -0.715 5.715 7 C 0.126 3.874 8 C 0.053 3.947 9 N -0.541 5.541 10 C 0.054 3.946 11 C 0.183 3.817 12 N -0.614 5.614 13 C -0.264 4.264 14 H 0.066 0.934 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.293 1.293 21 C 0.142 3.858 22 C 0.050 3.950 23 C -0.237 4.237 24 C 0.061 3.939 25 N -0.346 5.346 26 N -0.383 5.383 27 C 0.094 3.906 28 C 0.067 3.933 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.417 0.583 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.024 0.976 39 H 0.059 0.941 40 H -0.002 1.002 41 H 0.251 0.749 42 H 0.057 0.943 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.090 0.910 46 H 0.170 0.830 47 H 0.089 0.911 48 H 0.115 0.885 49 H 0.082 0.918 50 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 11.038 -30.159 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 H 0.151 0.849 4 C 0.300 3.700 5 O -0.460 6.460 6 N -0.368 5.368 7 C 0.001 3.999 8 C -0.074 4.074 9 N -0.267 5.267 10 C -0.075 4.075 11 C 0.057 3.943 12 N -0.338 5.338 13 C -0.394 4.394 14 H 0.084 0.916 15 C -0.247 4.247 16 N -0.581 5.581 17 Si 0.797 3.203 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.220 1.220 21 C 0.016 3.984 22 C -0.079 4.079 23 C -0.249 4.249 24 C -0.124 4.124 25 N -0.168 5.168 26 N -0.165 5.165 27 C -0.046 4.046 28 C -0.080 4.080 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.108 0.892 46 H 0.187 0.813 47 H 0.108 0.892 48 H 0.133 0.867 49 H 0.101 0.899 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.642 9.023 -31.094 32.708 hybrid contribution 0.593 1.213 1.829 2.273 sum -4.050 10.236 -29.265 31.267 Atomic orbital electron populations 1.21772 0.90869 1.02533 1.04117 1.19542 0.98014 0.99867 0.86568 0.84934 1.21279 0.79244 0.84180 0.85325 1.90716 1.39566 1.28380 1.87307 1.45801 1.53906 1.32479 1.04659 1.21233 0.98540 0.96398 0.83682 1.22250 1.01581 0.95714 0.87897 1.61912 1.16908 1.45512 1.02375 1.22581 1.00443 0.94170 0.90323 1.20657 0.84046 0.94880 0.94739 1.44421 1.08605 1.65772 1.15028 1.19562 0.89837 1.43302 0.86713 0.91630 1.25798 0.98591 1.01367 0.98924 1.70197 1.20170 1.50149 1.17625 0.85180 0.78683 0.77554 0.78844 1.19250 1.21351 1.21960 1.21129 0.97703 0.93596 0.85927 1.22550 0.87909 0.98558 0.98882 1.19718 1.09941 0.94961 1.00245 1.23702 0.98639 0.96825 0.93233 1.77284 1.15159 1.07887 1.16491 1.48765 1.39930 1.07580 1.20248 1.22167 0.94998 1.04813 0.82648 1.22899 0.98401 0.96914 0.89806 0.93503 0.89920 0.90123 0.74610 0.92604 0.92415 0.88508 0.93385 0.89361 0.95760 0.92263 0.98391 0.94005 0.92441 0.96846 0.95587 0.89226 0.81330 0.89232 0.86685 0.89912 0.76972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.98 71.98 0.65 -0.57 16 2 C -0.02 -0.23 3.09 -12.29 -0.04 -0.26 16 3 H 0.13 0.84 8.11 -2.39 -0.02 0.82 16 4 C 0.51 10.64 7.11 87.66 0.62 11.26 16 5 O -0.58 -18.37 15.37 -3.01 -0.05 -18.42 16 6 N -0.71 -12.09 5.45 -463.07 -2.52 -14.61 16 7 C 0.13 2.93 4.93 86.38 0.43 3.35 16 8 C 0.05 1.23 5.38 86.30 0.46 1.69 16 9 N -0.54 -17.99 4.78 -895.27 -4.28 -22.27 16 10 C 0.05 2.00 5.58 86.38 0.48 2.48 16 11 C 0.18 9.00 5.42 86.35 0.47 9.47 16 12 N -0.61 -32.02 3.04 -698.12 -2.12 -34.14 16 13 C -0.26 -14.89 9.63 84.03 0.81 -14.08 16 14 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 15 C -0.05 -2.92 4.93 84.86 0.42 -2.50 16 16 N -0.94 -55.96 11.15 21.65 0.24 -55.72 16 17 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 C 0.14 6.26 6.69 86.35 0.58 6.84 16 22 C 0.05 1.77 5.04 86.38 0.44 2.21 16 23 C -0.24 -4.26 4.36 -20.14 -0.09 -4.34 16 24 C 0.06 1.46 10.77 85.24 0.92 2.37 16 25 N -0.35 -8.69 12.58 -57.02 -0.72 -9.41 16 26 N -0.38 -6.64 4.01 -369.57 -1.48 -8.12 16 27 C 0.09 0.73 11.47 127.77 1.47 2.20 16 28 C 0.07 0.93 11.38 83.54 0.95 1.89 16 29 H 0.05 0.59 8.02 -2.39 -0.02 0.57 16 30 H 0.08 0.41 7.56 -2.39 -0.02 0.39 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.42 3.94 7.89 -92.71 -0.73 3.21 16 33 H 0.06 1.50 6.18 -2.38 -0.01 1.48 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.09 2.79 8.11 -2.38 -0.02 2.77 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 3.25 6.12 -2.39 -0.01 3.23 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 42 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.09 2.82 5.73 -2.39 -0.01 2.81 16 46 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 47 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.21 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -81.58 399.53 -0.14 -81.72 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.20 Total: 11.67 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 8.56 Total: 22.01 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -10.88 Total: -144.27 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.05 Total: -18.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -81.58 -0.14 -81.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490514838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.585 kcal (2) G-P(sol) polarization free energy of solvation -81.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds