Wall clock time and date at job start Tue Mar 31 2020 23:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50030 * 2 1 4 4 C 1.53042 * 109.52342 * 120.07970 * 2 1 3 5 5 C 1.53042 * 109.53763 * 58.60029 * 4 2 1 6 6 C 1.52760 * 109.38156 * 61.24404 * 5 4 2 7 7 N 1.46926 * 109.00517 * 305.58420 * 6 5 4 8 8 C 1.34778 * 120.62771 * 233.58220 * 7 6 5 9 9 O 1.21281 * 119.99745 * 174.05719 * 8 7 6 10 10 C 1.50701 * 120.00416 * 353.78512 * 8 7 6 11 11 C 1.52994 * 109.47118 * 180.27512 * 10 8 7 12 12 C 1.50706 * 109.46794 * 179.97438 * 11 10 8 13 13 C 1.39677 * 127.05023 * 125.00070 * 12 11 10 14 14 N 1.31380 * 105.90286 * 179.97438 * 13 12 11 15 15 N 1.28605 * 108.71452 * 359.97438 * 14 13 12 16 16 C 1.46497 * 124.61888 * 180.02562 * 15 14 13 17 17 N 1.28604 * 110.76146 * 359.74838 * 15 14 13 18 18 C 1.46924 * 118.73859 * 53.31768 * 7 6 5 19 19 H 1.08999 * 109.58994 * 66.42689 * 18 7 6 20 20 C 1.53006 * 109.58574 * 186.71150 * 18 7 6 21 21 N 1.46499 * 109.46633 * 292.93456 * 20 18 7 22 22 C 1.36937 * 119.99902 * 185.81844 * 21 20 18 23 23 H 1.08001 * 119.99944 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00371 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00276 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99745 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47164 * 89.99928 * 26 24 22 28 28 H 1.48501 * 109.46802 * 209.99940 * 26 24 22 29 29 H 1.48500 * 109.47044 * 329.99616 * 26 24 22 30 30 H 1.08997 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47172 * 300.07126 * 1 2 3 32 32 H 1.09009 * 109.46856 * 60.06689 * 1 2 3 33 33 H 1.08994 * 109.46121 * 178.62625 * 4 2 1 34 34 H 1.09003 * 109.45617 * 298.59415 * 4 2 1 35 35 H 1.08995 * 109.49612 * 181.32125 * 5 4 2 36 36 H 1.09001 * 109.49463 * 301.38334 * 5 4 2 37 37 H 1.09001 * 109.51035 * 185.70743 * 6 5 4 38 38 H 1.08997 * 109.43500 * 65.42322 * 6 5 4 39 39 H 1.09000 * 109.46627 * 300.27270 * 10 8 7 40 40 H 1.09001 * 109.47110 * 60.26922 * 10 8 7 41 41 H 1.09000 * 109.47174 * 299.99423 * 11 10 8 42 42 H 1.09001 * 109.47612 * 59.99717 * 11 10 8 43 43 H 1.08002 * 127.04975 * 359.95379 * 13 12 11 44 44 H 1.09007 * 109.46837 * 89.97517 * 16 15 14 45 45 H 1.08990 * 109.47530 * 209.98034 * 16 15 14 46 46 H 1.09001 * 109.47096 * 329.98134 * 16 15 14 47 47 H 1.09000 * 109.47005 * 52.93286 * 20 18 7 48 48 H 1.08994 * 109.47061 * 172.93780 * 20 18 7 49 49 H 0.96999 * 120.00660 * 5.82207 * 21 20 18 50 50 H 0.97000 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7230 1.2482 5 6 1.5043 -2.1559 1.2659 6 6 2.0105 -2.9023 0.0329 7 7 1.6522 -2.1380 -1.1697 8 6 0.9747 -2.7220 -2.1779 9 8 0.5908 -2.0563 -3.1161 10 6 0.6995 -4.2033 -2.1424 11 6 -0.0729 -4.6087 -3.3993 12 6 -0.3475 -6.0901 -3.3640 13 6 -1.5902 -6.7185 -3.4729 14 7 -1.3502 -8.0076 -3.3901 15 7 -0.0846 -8.1832 -3.2440 16 6 0.5650 -9.4900 -3.1162 17 7 0.5336 -7.0555 -3.2312 18 6 2.0414 -0.7235 -1.2497 19 1 3.1275 -0.6455 -1.2985 20 6 1.4252 -0.0920 -2.4997 21 7 2.0317 -0.6833 -3.6950 22 6 1.7236 -0.1898 -4.9347 23 1 1.0331 0.6351 -5.0312 24 6 2.2978 -0.7503 -6.0673 25 7 2.0012 -0.2763 -7.2589 26 14 3.4904 -2.1784 -5.9006 27 1 2.7398 -3.4587 -5.9508 28 1 4.4721 -2.1361 -7.0141 29 1 4.2076 -2.0756 -4.6043 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8907 33 1 3.1311 -0.7437 1.2349 34 1 1.6992 -0.1960 2.1388 35 1 1.8497 -2.6628 2.1668 36 1 0.4145 -2.1360 1.2548 37 1 1.5490 -3.8889 -0.0102 38 1 3.0940 -3.0056 0.0910 39 1 1.6433 -4.7473 -2.1046 40 1 0.1071 -4.4417 -1.2590 41 1 -1.0166 -4.0647 -3.4371 42 1 0.5196 -4.3703 -4.2826 43 1 -2.5513 -6.2423 -3.5990 44 1 0.8374 -9.8586 -4.1053 45 1 1.4623 -9.3915 -2.5053 46 1 -0.1214 -10.1922 -2.6431 47 1 0.3510 -0.2766 -2.5082 48 1 1.6093 0.9823 -2.4924 49 1 2.6515 -1.4244 -3.6085 50 1 2.4022 -0.6682 -8.0504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496482323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:34 Heat of formation + Delta-G solvation = 100.603054 kcal Electronic energy + Delta-G solvation = -30857.798957 eV Core-core repulsion = 26923.833544 eV Total energy + Delta-G solvation = -3933.965413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.54209 -41.70221 -38.69892 -36.73395 -35.68461 -34.55095 -33.89070 -33.69772 -32.44715 -32.18452 -29.12061 -28.20660 -27.27332 -26.13316 -25.10488 -23.93933 -23.31666 -22.61480 -21.67638 -20.64830 -19.94065 -19.04013 -18.27646 -17.82701 -17.57676 -16.90808 -16.71266 -16.38777 -15.91060 -15.73913 -15.61180 -15.34633 -15.08905 -14.73829 -14.62312 -14.36414 -14.09102 -14.05364 -13.79934 -13.66503 -13.51479 -13.40431 -13.09508 -13.02550 -12.93480 -12.65972 -12.54011 -12.32668 -12.12244 -11.96765 -11.91730 -11.82509 -11.81076 -11.64683 -11.26881 -11.22848 -11.16418 -10.88614 -10.12126 -9.77063 -9.46265 -8.80219 -7.93199 -5.13835 0.77066 1.28294 1.35774 1.37580 1.40050 1.50563 1.99328 2.19853 2.52268 3.11132 3.39891 3.58110 3.66968 3.79452 3.89138 3.98416 4.13439 4.16263 4.20463 4.28756 4.28977 4.30420 4.36951 4.38819 4.49046 4.54857 4.56449 4.66160 4.69699 4.81027 4.83957 4.87614 4.95529 4.98597 5.05144 5.06673 5.15481 5.15897 5.27397 5.30069 5.34017 5.35220 5.42861 5.61810 5.76227 5.82207 5.90019 6.30158 6.70568 7.19692 7.30109 7.60190 7.99689 8.17427 9.30683 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008227 B = 0.004890 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.510800 B = 5724.311480 C = 8140.628479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.131 4.131 6 C 0.104 3.896 7 N -0.612 5.612 8 C 0.466 3.534 9 O -0.505 6.505 10 C -0.114 4.114 11 C -0.010 4.010 12 C -0.002 4.002 13 C -0.026 4.026 14 N -0.304 5.304 15 N -0.161 5.161 16 C 0.095 3.905 17 N -0.305 5.305 18 C 0.148 3.852 19 H 0.063 0.937 20 C 0.169 3.831 21 N -0.720 5.720 22 C -0.188 4.188 23 H 0.048 0.952 24 C -0.072 4.072 25 N -0.994 5.994 26 Si 0.951 3.049 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.221 0.779 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.038 0.962 48 H 0.011 0.989 49 H 0.356 0.644 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -15.942 23.867 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.145 4.145 5 C -0.168 4.168 6 C -0.018 4.018 7 N -0.349 5.349 8 C 0.253 3.747 9 O -0.377 6.377 10 C -0.154 4.154 11 C -0.050 4.050 12 C -0.164 4.164 13 C -0.207 4.207 14 N -0.146 5.146 15 N -0.063 5.063 16 C -0.043 4.043 17 N -0.149 5.149 18 C 0.044 3.956 19 H 0.080 0.920 20 C 0.044 3.956 21 N -0.364 5.364 22 C -0.320 4.320 23 H 0.066 0.934 24 C -0.261 4.261 25 N -0.648 5.648 26 Si 0.781 3.219 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.188 1.188 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.237 0.763 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.055 0.945 48 H 0.028 0.972 49 H 0.189 0.811 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.907 -16.738 23.355 28.797 hybrid contribution 0.274 0.233 -1.151 1.206 sum -1.632 -16.505 22.204 27.714 Atomic orbital electron populations 1.21793 0.94859 1.01722 1.01208 1.21431 0.96610 0.99514 0.93836 0.90008 1.21512 1.00725 0.95728 0.96503 1.21870 1.01553 0.95821 0.97601 1.21847 1.00871 0.95548 0.83525 1.48010 1.57375 1.10539 1.19002 1.21122 0.80570 0.90765 0.82267 1.91176 1.48412 1.64043 1.34115 1.21507 1.02440 0.91880 0.99580 1.19488 1.02053 0.85615 0.97805 1.23180 0.90725 0.96541 1.05946 1.25086 1.01164 0.88566 1.05849 1.74002 1.00429 1.20779 1.19436 1.48436 1.01743 1.07746 1.48351 1.22549 0.99782 0.75946 1.05973 1.73965 1.27544 0.92797 1.20582 1.21380 0.97914 0.81195 0.95126 0.91952 1.20912 0.97112 0.93263 0.84356 1.42566 1.52449 1.39284 1.02065 1.18956 1.18348 1.10335 0.84370 0.93412 1.25223 1.03635 1.02504 0.94755 1.69878 1.50602 1.46698 0.97645 0.85445 0.79193 0.80502 0.76794 1.21573 1.22526 1.18770 0.92756 0.91124 0.94684 0.91389 0.89978 0.88420 0.91378 0.88516 0.91050 0.88924 0.86766 0.88617 0.93095 0.76269 0.88303 0.86422 0.85891 0.94477 0.97153 0.81095 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.21 71.98 0.59 -2.58 16 2 C -0.09 -2.08 2.81 -10.71 -0.03 -2.11 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.11 -1.61 5.43 30.62 0.17 -1.44 16 5 C -0.13 -1.72 5.72 30.53 0.17 -1.55 16 6 C 0.10 1.79 6.29 86.22 0.54 2.33 16 7 N -0.61 -16.67 2.42 -795.84 -1.92 -18.60 16 8 C 0.47 15.51 6.96 87.66 0.61 16.12 16 9 O -0.50 -22.54 9.65 -3.03 -0.03 -22.57 16 10 C -0.11 -2.98 4.10 29.85 0.12 -2.86 16 11 C -0.01 -0.30 5.10 29.85 0.15 -0.14 16 12 C 0.00 -0.06 6.61 42.98 0.28 0.22 16 13 C -0.03 -0.62 12.15 85.11 1.03 0.41 16 14 N -0.30 -7.56 12.05 -56.86 -0.69 -8.25 16 15 N -0.16 -3.71 4.35 -206.56 -0.90 -4.61 16 16 C 0.10 1.09 11.57 127.77 1.48 2.57 16 17 N -0.31 -8.48 12.05 -47.24 -0.57 -9.05 16 18 C 0.15 4.48 2.65 44.98 0.12 4.60 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 C 0.17 7.13 4.14 86.38 0.36 7.49 16 21 N -0.72 -37.27 2.96 -343.45 -1.02 -38.28 16 22 C -0.19 -11.80 10.17 84.03 0.85 -10.95 16 23 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 24 C -0.07 -4.62 5.50 84.86 0.47 -4.15 16 25 N -0.99 -68.87 13.97 21.65 0.30 -68.56 16 26 Si 0.95 51.20 27.74 68.60 1.90 53.10 16 27 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 28 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 29 H -0.26 -12.96 6.52 99.48 0.65 -12.31 16 30 H 0.05 1.27 5.97 -2.39 -0.01 1.25 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 0.99 6.52 -2.38 -0.02 0.97 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.98 6.34 -2.39 -0.02 0.96 16 37 H 0.10 1.36 5.97 -2.39 -0.01 1.35 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 40 H 0.11 2.26 7.45 -2.39 -0.02 2.25 16 41 H 0.10 2.84 8.09 -2.39 -0.02 2.82 16 42 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 43 H 0.22 3.96 8.06 -2.91 -0.02 3.94 16 44 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.04 1.70 5.11 -2.39 -0.01 1.69 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.36 18.14 4.68 -92.71 -0.43 17.70 16 50 H 0.25 16.65 8.31 -92.71 -0.77 15.88 16 Total: -1.00 -87.49 383.69 4.46 -83.03 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.45 Total: 25.84 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.93 Total: 7.95 kcal Atomic # 7 Polarization: -142.56 SS G_CDS: -4.79 Total: -147.35 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.03 Total: -22.57 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.90 Total: 53.10 kcal Total: -87.49 4.46 -83.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496482323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.634 kcal (2) G-P(sol) polarization free energy of solvation -87.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds