Wall clock time and date at job start Tue Mar 31 2020 23:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50039 * 2 1 4 4 C 1.53036 * 109.49912 * 239.93100 * 2 1 3 5 5 C 1.53042 * 109.53994 * 178.65152 * 4 2 1 6 6 C 1.53192 * 109.31240 * 61.36640 * 5 4 2 7 7 N 1.46918 * 108.77465 * 305.36792 * 6 5 4 8 8 C 1.34781 * 120.63002 * 233.58346 * 7 6 5 9 9 O 1.21280 * 120.00246 * 175.52378 * 8 7 6 10 10 C 1.50697 * 119.99800 * 355.52820 * 8 7 6 11 11 C 1.53006 * 109.46853 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46534 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.46508 * 179.97438 * 12 11 10 14 14 C 1.34432 * 126.81973 * 125.00070 * 13 12 11 15 15 N 1.30833 * 108.07723 * 180.20565 * 14 13 12 16 16 C 1.33239 * 109.82765 * 359.60214 * 15 14 13 17 17 N 1.30721 * 108.94545 * 0.40423 * 16 15 14 18 18 C 1.46929 * 118.74371 * 53.86063 * 7 6 5 19 19 H 1.08996 * 109.58877 * 65.92143 * 18 7 6 20 20 C 1.52996 * 109.59050 * 186.35624 * 18 7 6 21 21 N 1.46502 * 109.47671 * 62.26396 * 20 18 7 22 22 C 1.36931 * 120.00269 * 182.76822 * 21 20 18 23 23 H 1.07998 * 119.99973 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00024 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99926 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99874 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47574 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47284 * 120.00228 * 26 24 22 29 29 H 1.48503 * 109.46906 * 239.99874 * 26 24 22 30 30 H 1.08999 * 109.47812 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47358 * 300.06800 * 1 2 3 32 32 H 1.09005 * 109.47550 * 60.06568 * 1 2 3 33 33 H 1.09002 * 109.45589 * 58.63279 * 4 2 1 34 34 H 1.08993 * 109.46380 * 298.67574 * 4 2 1 35 35 H 1.08997 * 109.49525 * 301.41673 * 5 4 2 36 36 H 1.08998 * 109.52343 * 181.33594 * 5 4 2 37 37 H 1.08995 * 109.58785 * 185.57708 * 6 5 4 38 38 H 1.09006 * 109.70059 * 65.21935 * 6 5 4 39 39 H 1.09004 * 109.47213 * 59.99904 * 10 8 7 40 40 H 1.08995 * 109.47243 * 299.99752 * 10 8 7 41 41 H 1.08996 * 109.47312 * 60.00273 * 11 10 8 42 42 H 1.08996 * 109.47132 * 299.99439 * 11 10 8 43 43 H 1.08996 * 109.46992 * 60.00207 * 12 11 10 44 44 H 1.08995 * 109.47508 * 299.99898 * 12 11 10 45 45 H 1.08006 * 125.95857 * 359.94791 * 14 13 12 46 46 H 1.07998 * 125.52697 * 180.19923 * 16 15 14 47 47 H 1.09001 * 109.47285 * 182.26800 * 20 18 7 48 48 H 1.09006 * 109.47135 * 302.26706 * 20 18 7 49 49 H 0.97004 * 119.99483 * 2.76333 * 21 20 18 50 50 H 0.97003 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2484 5 6 3.5708 -0.6940 -1.2665 6 6 4.1059 -1.4255 -0.0315 7 7 3.5052 -0.8283 1.1690 8 6 4.2818 -0.3853 2.1776 9 8 3.7799 0.1788 3.1266 10 6 5.7738 -0.5910 2.1260 11 6 6.4139 0.0012 3.3833 12 6 7.9287 -0.2082 3.3311 13 7 8.5417 0.3593 4.5347 14 6 9.3429 -0.2765 5.4071 15 7 9.6764 0.5725 6.3450 16 6 9.1171 1.7571 6.1021 17 7 8.4098 1.6757 5.0058 18 6 2.0417 -0.7288 1.2519 19 1 1.6095 -1.7283 1.2984 20 6 1.6512 0.0608 2.5029 21 7 2.1819 1.4229 2.4062 22 6 2.0059 2.3014 3.4416 23 1 1.4761 1.9901 4.3298 24 6 2.5083 3.5922 3.3498 25 7 3.1543 3.9714 2.2675 26 14 2.2687 4.7904 4.7626 27 1 1.5159 4.1235 5.8552 28 1 3.5938 5.2290 5.2699 29 1 1.5055 5.9717 4.2858 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3634 0.5128 -0.8906 33 1 1.6576 -0.2243 -2.1389 34 1 1.6971 -1.7571 -1.2354 35 1 3.9154 0.3400 -1.2546 36 1 3.9338 -1.1881 -2.1677 37 1 5.1901 -1.3230 0.0128 38 1 3.8406 -2.4814 -0.0861 39 1 6.1787 -0.0944 1.2442 40 1 5.9920 -1.6576 2.0747 41 1 6.0091 -0.4950 4.2653 42 1 6.1958 1.0679 3.4341 43 1 8.3338 0.2877 2.4491 44 1 8.1465 -1.2750 3.2804 45 1 9.6534 -1.3092 5.3466 46 1 9.2274 2.6404 6.7136 47 1 0.5649 0.0990 2.5841 48 1 2.0645 -0.4284 3.3850 49 1 2.6581 1.7023 1.6086 50 1 3.5058 4.8733 2.2035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496486532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:20 Heat of formation + Delta-G solvation = 100.014490 kcal Electronic energy + Delta-G solvation = -30666.829077 eV Core-core repulsion = 26732.838142 eV Total energy + Delta-G solvation = -3933.990935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98330 -40.20829 -37.35858 -35.52093 -34.58937 -33.14824 -32.12643 -31.78412 -31.13877 -29.98901 -27.83254 -26.43643 -25.79463 -23.96461 -22.80293 -22.49912 -21.94907 -21.17815 -20.96298 -19.70874 -18.37670 -17.32614 -16.93996 -16.30822 -15.97932 -15.53080 -15.29492 -14.85771 -14.68774 -14.29953 -14.21212 -14.14748 -13.99485 -13.35004 -13.22226 -13.11336 -12.76538 -12.68468 -12.56427 -12.13044 -12.05658 -11.82231 -11.65999 -11.57086 -11.40860 -11.26105 -10.99267 -10.72151 -10.65645 -10.60862 -10.51641 -10.34928 -9.99550 -9.97025 -9.75065 -9.74410 -9.64010 -9.43220 -8.65420 -8.26626 -7.94734 -6.45015 -5.49641 -2.69015 1.69028 2.33570 3.01150 3.35299 3.48577 3.59325 3.64949 3.66492 4.29711 4.37138 4.70615 4.83676 4.85821 4.87797 4.99198 5.02015 5.06189 5.18328 5.21021 5.26739 5.38560 5.42906 5.46427 5.51034 5.66546 5.71353 5.82816 5.83944 5.86408 5.91873 5.97921 6.05892 6.10791 6.12958 6.29230 6.29553 6.38299 6.47862 6.49313 6.53828 6.59502 6.74592 6.83199 6.88631 7.03644 7.29962 7.94968 8.02500 8.11385 8.69296 9.01885 9.81315 10.40467 10.75612 11.74790 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.004413 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.804862 B = 6343.232467 C = 8826.354426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.112 4.112 5 C -0.137 4.137 6 C 0.114 3.886 7 N -0.617 5.617 8 C 0.479 3.521 9 O -0.443 6.443 10 C -0.130 4.130 11 C -0.115 4.115 12 C 0.130 3.870 13 N -0.374 5.374 14 C 0.245 3.755 15 N -0.552 5.552 16 C 0.190 3.810 17 N -0.301 5.301 18 C 0.150 3.850 19 H 0.061 0.939 20 C 0.157 3.843 21 N -0.696 5.696 22 C -0.197 4.197 23 H 0.062 0.938 24 C -0.022 4.022 25 N -0.941 5.941 26 Si 0.897 3.103 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.297 1.297 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.216 0.784 46 H 0.215 0.785 47 H 0.010 0.990 48 H 0.045 0.955 49 H 0.379 0.621 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -16.495 -6.689 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.106 0.894 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.009 4.009 7 N -0.355 5.355 8 C 0.264 3.736 9 O -0.311 6.311 10 C -0.171 4.171 11 C -0.153 4.153 12 C 0.008 3.992 13 N -0.165 5.165 14 C -0.052 4.052 15 N -0.280 5.280 16 C -0.113 4.113 17 N -0.128 5.128 18 C 0.047 3.953 19 H 0.079 0.921 20 C 0.030 3.970 21 N -0.340 5.340 22 C -0.329 4.329 23 H 0.080 0.920 24 C -0.216 4.216 25 N -0.593 5.593 26 Si 0.730 3.270 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.232 0.768 46 H 0.231 0.769 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.214 0.786 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.517 -15.620 -6.031 18.354 hybrid contribution 0.193 0.577 0.184 0.635 sum 7.711 -15.043 -5.848 17.887 Atomic orbital electron populations 1.21749 0.94899 1.00814 1.02401 1.21591 0.95816 1.01215 0.93622 0.89379 1.21572 0.94958 1.00211 0.98223 1.21923 0.96603 1.01730 0.97233 1.21554 0.97908 0.96348 0.85124 1.47907 1.06160 1.63484 1.17975 1.20294 0.88300 0.80598 0.84445 1.91091 1.72716 1.34754 1.32498 1.21534 0.94615 1.01550 0.99409 1.21574 0.90645 1.05140 0.97988 1.21921 0.95033 0.98218 0.84040 1.50603 1.36324 1.08160 1.21377 1.26001 0.92167 1.00170 0.86891 1.70496 1.28843 1.01602 1.27020 1.26027 0.93981 0.97062 0.94213 1.78244 1.23466 0.96212 1.14896 1.21576 0.79139 0.97919 0.96713 0.92103 1.20966 0.94539 0.87749 0.93746 1.42206 1.66055 1.06620 1.19134 1.19136 1.26813 0.91222 0.95728 0.91959 1.24528 1.02124 0.97525 0.97419 1.69642 1.44121 1.18078 1.27439 0.86227 0.77001 0.81578 0.82195 1.21002 1.22302 1.22498 0.93548 0.91397 0.93102 0.92151 0.92474 0.91161 0.91482 0.90399 0.92381 0.89568 0.90035 0.90850 0.88656 0.89315 0.88372 0.76783 0.76858 0.97274 0.93768 0.78639 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.96 37.15 0.33 -1.68 16 2 C -0.10 -1.58 2.22 -90.28 -0.20 -1.78 16 3 H 0.09 1.72 6.51 -51.93 -0.34 1.38 16 4 C -0.11 -1.33 5.16 -26.69 -0.14 -1.47 16 5 C -0.14 -1.50 6.08 -26.61 -0.16 -1.66 16 6 C 0.11 1.23 6.33 -3.71 -0.02 1.21 16 7 N -0.62 -9.33 2.92 -164.97 -0.48 -9.81 16 8 C 0.48 8.36 7.15 -10.98 -0.08 8.28 16 9 O -0.44 -10.13 9.64 5.56 0.05 -10.07 16 10 C -0.13 -1.62 4.09 -27.88 -0.11 -1.73 16 11 C -0.11 -1.63 4.72 -26.73 -0.13 -1.76 16 12 C 0.13 1.32 6.55 -4.04 -0.03 1.29 16 13 N -0.37 -4.87 3.69 -62.62 -0.23 -5.10 16 14 C 0.24 2.73 12.63 -90.65 -1.14 1.58 16 15 N -0.55 -7.63 11.19 -15.83 -0.18 -7.80 16 16 C 0.19 2.74 13.03 -91.81 -1.20 1.55 16 17 N -0.30 -4.98 12.57 29.29 0.37 -4.62 16 18 C 0.15 2.44 2.65 -67.37 -0.18 2.27 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.16 3.34 4.75 -4.04 -0.02 3.32 16 21 N -0.70 -17.94 3.03 -59.91 -0.18 -18.12 16 22 C -0.20 -5.80 9.34 -15.06 -0.14 -5.94 16 23 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 25 N -0.94 -29.70 13.06 55.49 0.72 -28.97 16 26 Si 0.90 24.27 29.55 -169.99 -5.02 19.25 16 27 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 28 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 29 H -0.30 -8.01 7.11 56.52 0.40 -7.60 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.98 7.50 -51.93 -0.39 0.59 16 40 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.09 1.87 8.10 -51.93 -0.42 1.45 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.22 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.22 2.40 8.06 -52.49 -0.42 1.97 16 47 H 0.01 0.21 6.78 -51.93 -0.35 -0.14 16 48 H 0.04 1.03 6.24 -51.93 -0.32 0.71 16 49 H 0.38 10.32 5.88 -40.82 -0.24 10.08 16 50 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -38.12 389.61 -10.57 -48.69 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.18 Total: 7.99 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.31 Total: 2.70 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: 0.02 Total: -74.43 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.05 Total: -10.07 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.02 Total: 19.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.12 -10.57 -48.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496486532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.707 kcal (2) G-P(sol) polarization free energy of solvation -38.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds