Wall clock time and date at job start Tue Mar 31 2020 23:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50039 * 2 1 4 4 C 1.53036 * 109.49912 * 239.93100 * 2 1 3 5 5 C 1.53042 * 109.53994 * 178.65152 * 4 2 1 6 6 C 1.53192 * 109.31240 * 61.36640 * 5 4 2 7 7 N 1.46918 * 108.77465 * 305.36792 * 6 5 4 8 8 C 1.34781 * 120.63002 * 233.58346 * 7 6 5 9 9 O 1.21280 * 120.00246 * 175.52378 * 8 7 6 10 10 C 1.50697 * 119.99800 * 355.52820 * 8 7 6 11 11 C 1.53006 * 109.46853 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46534 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.46508 * 179.97438 * 12 11 10 14 14 C 1.34432 * 126.81973 * 125.00070 * 13 12 11 15 15 N 1.30833 * 108.07723 * 180.20565 * 14 13 12 16 16 C 1.33239 * 109.82765 * 359.60214 * 15 14 13 17 17 N 1.30721 * 108.94545 * 0.40423 * 16 15 14 18 18 C 1.46929 * 118.74371 * 53.86063 * 7 6 5 19 19 H 1.08996 * 109.58877 * 65.92143 * 18 7 6 20 20 C 1.52996 * 109.59050 * 186.35624 * 18 7 6 21 21 N 1.46502 * 109.47671 * 62.26396 * 20 18 7 22 22 C 1.36931 * 120.00269 * 182.76822 * 21 20 18 23 23 H 1.07998 * 119.99973 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00024 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99926 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99874 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47574 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47284 * 120.00228 * 26 24 22 29 29 H 1.48503 * 109.46906 * 239.99874 * 26 24 22 30 30 H 1.08999 * 109.47812 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47358 * 300.06800 * 1 2 3 32 32 H 1.09005 * 109.47550 * 60.06568 * 1 2 3 33 33 H 1.09002 * 109.45589 * 58.63279 * 4 2 1 34 34 H 1.08993 * 109.46380 * 298.67574 * 4 2 1 35 35 H 1.08997 * 109.49525 * 301.41673 * 5 4 2 36 36 H 1.08998 * 109.52343 * 181.33594 * 5 4 2 37 37 H 1.08995 * 109.58785 * 185.57708 * 6 5 4 38 38 H 1.09006 * 109.70059 * 65.21935 * 6 5 4 39 39 H 1.09004 * 109.47213 * 59.99904 * 10 8 7 40 40 H 1.08995 * 109.47243 * 299.99752 * 10 8 7 41 41 H 1.08996 * 109.47312 * 60.00273 * 11 10 8 42 42 H 1.08996 * 109.47132 * 299.99439 * 11 10 8 43 43 H 1.08996 * 109.46992 * 60.00207 * 12 11 10 44 44 H 1.08995 * 109.47508 * 299.99898 * 12 11 10 45 45 H 1.08006 * 125.95857 * 359.94791 * 14 13 12 46 46 H 1.07998 * 125.52697 * 180.19923 * 16 15 14 47 47 H 1.09001 * 109.47285 * 182.26800 * 20 18 7 48 48 H 1.09006 * 109.47135 * 302.26706 * 20 18 7 49 49 H 0.97004 * 119.99483 * 2.76333 * 21 20 18 50 50 H 0.97003 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2484 5 6 3.5708 -0.6940 -1.2665 6 6 4.1059 -1.4255 -0.0315 7 7 3.5052 -0.8283 1.1690 8 6 4.2818 -0.3853 2.1776 9 8 3.7799 0.1788 3.1266 10 6 5.7738 -0.5910 2.1260 11 6 6.4139 0.0012 3.3833 12 6 7.9287 -0.2082 3.3311 13 7 8.5417 0.3593 4.5347 14 6 9.3429 -0.2765 5.4071 15 7 9.6764 0.5725 6.3450 16 6 9.1171 1.7571 6.1021 17 7 8.4098 1.6757 5.0058 18 6 2.0417 -0.7288 1.2519 19 1 1.6095 -1.7283 1.2984 20 6 1.6512 0.0608 2.5029 21 7 2.1819 1.4229 2.4062 22 6 2.0059 2.3014 3.4416 23 1 1.4761 1.9901 4.3298 24 6 2.5083 3.5922 3.3498 25 7 3.1543 3.9714 2.2675 26 14 2.2687 4.7904 4.7626 27 1 1.5159 4.1235 5.8552 28 1 3.5938 5.2290 5.2699 29 1 1.5055 5.9717 4.2858 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3634 0.5128 -0.8906 33 1 1.6576 -0.2243 -2.1389 34 1 1.6971 -1.7571 -1.2354 35 1 3.9154 0.3400 -1.2546 36 1 3.9338 -1.1881 -2.1677 37 1 5.1901 -1.3230 0.0128 38 1 3.8406 -2.4814 -0.0861 39 1 6.1787 -0.0944 1.2442 40 1 5.9920 -1.6576 2.0747 41 1 6.0091 -0.4950 4.2653 42 1 6.1958 1.0679 3.4341 43 1 8.3338 0.2877 2.4491 44 1 8.1465 -1.2750 3.2804 45 1 9.6534 -1.3092 5.3466 46 1 9.2274 2.6404 6.7136 47 1 0.5649 0.0990 2.5841 48 1 2.0645 -0.4284 3.3850 49 1 2.6581 1.7023 1.6086 50 1 3.5058 4.8733 2.2035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496486532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:18 Heat of formation + Delta-G solvation = 75.318503 kcal Electronic energy + Delta-G solvation = -30667.899975 eV Core-core repulsion = 26732.838142 eV Total energy + Delta-G solvation = -3935.061833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.96022 -41.49761 -38.59576 -36.73936 -36.10758 -34.60754 -33.64027 -32.91800 -32.16689 -31.75171 -29.13939 -27.66090 -26.99176 -25.61296 -24.37346 -23.73975 -22.87206 -22.28202 -22.04970 -20.96865 -19.59693 -19.14188 -18.23793 -17.51964 -17.04356 -16.85605 -16.56568 -16.26996 -15.87033 -15.76054 -15.62851 -15.26836 -14.99642 -14.82002 -14.70066 -14.42437 -14.15400 -13.95035 -13.62320 -13.45895 -13.25572 -13.13157 -13.07032 -12.87221 -12.72644 -12.65010 -12.45648 -12.38732 -12.12629 -12.03332 -11.80643 -11.71613 -11.55265 -11.39548 -11.09198 -10.99732 -10.85887 -10.81254 -10.61525 -9.71824 -9.30605 -8.56991 -7.85244 -5.00671 0.74415 1.36143 1.39701 1.47055 1.48427 2.00963 2.09143 2.31481 2.59203 3.47696 3.50496 3.51855 3.70702 3.89262 3.91463 3.92441 4.02149 4.14460 4.15517 4.17554 4.29903 4.34123 4.38258 4.47041 4.51125 4.59724 4.64235 4.69389 4.71458 4.86675 4.92667 4.94980 5.00964 5.03744 5.08514 5.17592 5.22677 5.30888 5.33058 5.34083 5.44240 5.46575 5.48633 5.51389 5.64828 5.94243 6.01102 6.37461 6.80881 7.12895 7.44703 7.73508 8.27274 8.50290 9.39716 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.004413 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.804862 B = 6343.232467 C = 8826.354426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.035 0.965 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.108 3.892 7 N -0.616 5.616 8 C 0.467 3.533 9 O -0.516 6.516 10 C -0.117 4.117 11 C -0.103 4.103 12 C 0.133 3.867 13 N -0.382 5.382 14 C 0.261 3.739 15 N -0.579 5.579 16 C 0.185 3.815 17 N -0.365 5.365 18 C 0.155 3.845 19 H 0.093 0.907 20 C 0.159 3.841 21 N -0.695 5.695 22 C -0.191 4.191 23 H 0.053 0.947 24 C -0.083 4.083 25 N -0.971 5.971 26 Si 0.953 3.047 27 H -0.275 1.275 28 H -0.305 1.305 29 H -0.291 1.291 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.050 0.950 42 H 0.024 0.976 43 H 0.098 0.902 44 H 0.160 0.840 45 H 0.272 0.728 46 H 0.230 0.770 47 H 0.004 0.996 48 H 0.023 0.977 49 H 0.370 0.630 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -20.798 -8.774 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.054 0.946 4 C -0.143 4.143 5 C -0.173 4.173 6 C -0.014 4.014 7 N -0.353 5.353 8 C 0.254 3.746 9 O -0.389 6.389 10 C -0.158 4.158 11 C -0.142 4.142 12 C 0.013 3.987 13 N -0.173 5.173 14 C -0.035 4.035 15 N -0.308 5.308 16 C -0.118 4.118 17 N -0.193 5.193 18 C 0.051 3.949 19 H 0.110 0.890 20 C 0.033 3.967 21 N -0.337 5.337 22 C -0.325 4.325 23 H 0.071 0.929 24 C -0.274 4.274 25 N -0.626 5.626 26 Si 0.785 3.215 27 H -0.200 1.200 28 H -0.233 1.233 29 H -0.219 1.219 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.155 0.845 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.177 0.823 45 H 0.287 0.713 46 H 0.246 0.754 47 H 0.022 0.978 48 H 0.041 0.959 49 H 0.203 0.797 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.832 -19.986 -8.164 23.326 hybrid contribution -0.259 1.773 0.824 1.972 sum 8.574 -18.213 -7.340 21.426 Atomic orbital electron populations 1.21711 0.94291 1.02325 1.01137 1.21494 0.96360 0.98688 0.95304 0.94601 1.21545 0.95708 1.01124 0.95938 1.21934 0.95839 1.00444 0.99071 1.21968 0.99259 0.97604 0.82561 1.48094 1.05505 1.62677 1.19005 1.21311 0.90596 0.79019 0.83668 1.91064 1.74335 1.38159 1.35390 1.21535 0.90476 1.04918 0.98835 1.21338 0.94204 1.00377 0.98242 1.22169 0.91409 1.01652 0.83503 1.50747 1.36966 1.07178 1.22414 1.27071 0.89916 1.01545 0.84935 1.70511 1.29937 1.01803 1.28507 1.26427 0.93355 0.98124 0.93907 1.78162 1.25456 0.99201 1.16495 1.21463 0.80687 0.98354 0.94403 0.88972 1.20969 0.93592 0.86126 0.96035 1.42190 1.65804 1.08016 1.17650 1.19379 1.25164 0.91912 0.96031 0.92938 1.25160 1.03250 0.99214 0.99760 1.69783 1.45826 1.17927 1.29051 0.85315 0.76366 0.79792 0.79987 1.20021 1.23301 1.21874 0.90519 0.94785 0.92290 0.91650 0.89625 0.94326 0.87717 0.87861 0.88929 0.87835 0.84487 0.93161 0.95670 0.88407 0.82256 0.71293 0.75400 0.97816 0.95884 0.79730 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.96 71.98 0.64 -3.18 16 2 C -0.10 -2.98 2.22 -10.57 -0.02 -3.00 16 3 H 0.04 1.47 6.51 -2.38 -0.02 1.45 16 4 C -0.11 -2.16 5.16 30.62 0.16 -2.00 16 5 C -0.13 -2.46 6.08 30.67 0.19 -2.27 16 6 C 0.11 1.81 6.33 86.36 0.55 2.36 16 7 N -0.62 -17.57 2.92 -794.23 -2.32 -19.89 16 8 C 0.47 16.27 7.15 87.66 0.63 16.90 16 9 O -0.52 -25.00 9.64 -3.03 -0.03 -25.03 16 10 C -0.12 -2.66 4.09 29.85 0.12 -2.54 16 11 C -0.10 -2.94 4.72 30.60 0.14 -2.80 16 12 C 0.13 2.37 6.55 86.38 0.57 2.93 16 13 N -0.38 -9.57 3.69 -352.04 -1.30 -10.87 16 14 C 0.26 5.16 12.63 180.36 2.28 7.44 16 15 N -0.58 -15.54 11.19 -203.99 -2.28 -17.82 16 16 C 0.18 5.51 13.03 180.76 2.36 7.86 16 17 N -0.36 -12.63 12.57 -61.24 -0.77 -13.40 16 18 C 0.15 4.92 2.65 45.12 0.12 5.04 16 19 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 20 C 0.16 7.06 4.75 86.38 0.41 7.47 16 21 N -0.70 -38.07 3.03 -343.45 -1.04 -39.11 16 22 C -0.19 -11.96 9.34 84.04 0.79 -11.17 16 23 H 0.05 3.30 7.83 -2.91 -0.02 3.28 16 24 C -0.08 -5.32 5.50 84.86 0.47 -4.85 16 25 N -0.97 -64.73 13.06 21.65 0.28 -64.45 16 26 Si 0.95 52.48 29.55 68.60 2.03 54.50 16 27 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.30 -17.11 7.11 99.48 0.71 -16.40 16 29 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.16 6.70 -2.39 -0.02 1.14 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.25 5.96 -2.39 -0.01 1.24 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.10 2.04 7.50 -2.38 -0.02 2.02 16 40 H 0.14 1.63 8.10 -2.39 -0.02 1.61 16 41 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.02 1.06 8.10 -2.39 -0.02 1.04 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.16 0.91 8.09 -2.39 -0.02 0.89 16 45 H 0.27 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 47 H 0.00 0.19 6.78 -2.39 -0.02 0.18 16 48 H 0.02 1.14 6.24 -2.38 -0.01 1.13 16 49 H 0.37 21.49 5.88 -92.71 -0.54 20.94 16 50 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -95.84 389.61 4.35 -91.50 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.39 Total: 26.39 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 9.39 Total: 18.19 kcal Atomic # 7 Polarization: -158.12 SS G_CDS: -7.43 Total: -165.55 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.03 Total: -25.03 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.03 Total: 54.50 kcal Total: -95.84 4.35 -91.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496486532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.815 kcal (2) G-P(sol) polarization free energy of solvation -95.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds