Wall clock time and date at job start Tue Mar 31 2020 23:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.52366 * 2 1 4 4 C 1.53043 * 109.49382 * 120.07459 * 2 1 3 5 5 C 1.53038 * 109.53735 * 181.31439 * 4 2 1 6 6 C 1.53191 * 109.31870 * 298.63990 * 5 4 2 7 7 N 1.46930 * 108.77184 * 54.63107 * 6 5 4 8 8 C 1.34779 * 120.63065 * 126.41885 * 7 6 5 9 9 O 1.21276 * 120.00043 * 174.90730 * 8 7 6 10 10 C 1.50700 * 119.99626 * 354.91213 * 8 7 6 11 11 C 1.52999 * 109.47039 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47486 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.47297 * 179.97438 * 12 11 10 14 14 C 1.34427 * 126.82180 * 124.71000 * 13 12 11 15 15 N 1.30822 * 108.07656 * 179.89346 * 14 13 12 16 16 C 1.33245 * 109.83301 * 0.38169 * 15 14 13 17 17 N 1.30712 * 108.94094 * 359.76248 * 16 15 14 18 18 C 1.46928 * 118.73991 * 306.39132 * 7 6 5 19 19 H 1.09002 * 109.58977 * 293.82802 * 18 7 6 20 20 C 1.52996 * 109.58628 * 173.54383 * 18 7 6 21 21 N 1.46495 * 109.47453 * 72.99788 * 20 18 7 22 22 C 1.36944 * 119.99995 * 174.77911 * 21 20 18 23 23 H 1.07995 * 119.99674 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99726 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00442 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99887 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46897 * 60.00367 * 26 24 22 28 28 H 1.48503 * 109.47410 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47703 * 300.00333 * 26 24 22 30 30 H 1.09003 * 109.46842 * 180.08197 * 1 2 3 31 31 H 1.08994 * 109.47351 * 300.08417 * 1 2 3 32 32 H 1.09001 * 109.46933 * 60.08613 * 1 2 3 33 33 H 1.08998 * 109.46277 * 301.34030 * 4 2 1 34 34 H 1.09006 * 109.45711 * 61.30232 * 4 2 1 35 35 H 1.09001 * 109.49916 * 178.68062 * 5 4 2 36 36 H 1.09007 * 109.49687 * 58.58943 * 5 4 2 37 37 H 1.09002 * 109.58540 * 294.84840 * 6 5 4 38 38 H 1.08991 * 109.58960 * 174.41651 * 6 5 4 39 39 H 1.09003 * 109.47052 * 299.99926 * 10 8 7 40 40 H 1.08995 * 109.47852 * 59.99647 * 10 8 7 41 41 H 1.09003 * 109.47178 * 299.99898 * 11 10 8 42 42 H 1.09006 * 109.47060 * 59.99716 * 11 10 8 43 43 H 1.09003 * 109.47194 * 300.00335 * 12 11 10 44 44 H 1.08999 * 109.46798 * 59.99630 * 12 11 10 45 45 H 1.08003 * 125.96026 * 0.03682 * 14 13 12 46 46 H 1.07995 * 125.53072 * 179.72622 * 16 15 14 47 47 H 1.08997 * 109.47106 * 193.00465 * 20 18 7 48 48 H 1.09005 * 109.47199 * 312.99903 * 20 18 7 49 49 H 0.97004 * 120.00099 * 354.79003 * 21 20 18 50 50 H 0.97000 * 120.00102 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5708 -0.6950 1.2662 6 6 4.1054 -1.4267 0.0310 7 7 3.5047 -0.8292 -1.1694 8 6 4.2812 -0.3865 -2.1781 9 8 3.7728 0.0195 -3.2016 10 6 5.7813 -0.3962 -2.0342 11 6 6.4197 0.1523 -3.3119 12 6 7.9427 0.1431 -3.1657 13 7 8.5540 0.6678 -4.3893 14 6 9.4193 1.6923 -4.4824 15 7 9.7312 1.8470 -5.7434 16 6 9.0815 0.9492 -6.4832 17 7 8.3477 0.2042 -5.6989 18 6 2.0414 -0.7239 -1.2495 19 1 1.6053 -1.7217 -1.2978 20 6 1.6517 0.0672 -2.4997 21 7 1.8751 -0.7582 -3.6893 22 6 1.4961 -0.2988 -4.9224 23 1 1.0329 0.6720 -5.0180 24 6 1.7073 -1.0811 -6.0494 25 7 2.2714 -2.2646 -5.9328 26 14 1.1896 -0.4549 -7.7314 27 1 1.9091 0.8089 -8.0320 28 1 1.5218 -1.4713 -8.7619 29 1 -0.2741 -0.2047 -7.7376 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6581 -0.2243 2.1390 34 1 1.6967 -1.7572 1.2354 35 1 3.9333 -1.1895 2.1673 36 1 3.9159 0.3389 1.2542 37 1 3.8376 -2.4818 0.0870 38 1 5.1896 -1.3246 -0.0135 39 1 6.0691 0.2269 -1.1874 40 1 6.1238 -1.4173 -1.8669 41 1 6.1319 -0.4711 -4.1585 42 1 6.0773 1.1735 -3.4797 43 1 8.2302 0.7667 -2.3192 44 1 8.2854 -0.8779 -2.9977 45 1 9.7936 2.2831 -3.6593 46 1 9.1496 0.8530 -7.5567 47 1 0.5989 0.3433 -2.4415 48 1 2.2608 0.9689 -2.5636 49 1 2.2914 -1.6301 -3.6034 50 1 2.4186 -2.8114 -6.7204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496486533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:22 Heat of formation + Delta-G solvation = 72.792376 kcal Electronic energy + Delta-G solvation = -30303.297532 eV Core-core repulsion = 26368.126158 eV Total energy + Delta-G solvation = -3935.171374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.96137 -41.49804 -38.63159 -36.78586 -36.10269 -34.75226 -33.66708 -32.92548 -32.16786 -31.90915 -29.07734 -27.66635 -27.03835 -25.65376 -24.31596 -23.62819 -22.87660 -22.31943 -21.92686 -21.11214 -19.87603 -19.12748 -18.22876 -17.47295 -17.05694 -16.85174 -16.71640 -16.31562 -15.92545 -15.68745 -15.50922 -15.27216 -15.02324 -14.94715 -14.70251 -14.36767 -14.14393 -13.85808 -13.68499 -13.56171 -13.36077 -13.21904 -12.96884 -12.86584 -12.79071 -12.66385 -12.47268 -12.44534 -12.17410 -11.89427 -11.84998 -11.80984 -11.60605 -11.46301 -11.07325 -11.00190 -10.85190 -10.80943 -10.61621 -9.83119 -9.33274 -8.62461 -7.86151 -5.03190 0.73934 1.37050 1.42282 1.47189 1.48448 2.01018 2.06481 2.23932 2.58222 3.45669 3.48974 3.52066 3.68225 3.78676 3.85774 3.89919 4.00060 4.13576 4.15300 4.18779 4.28410 4.35533 4.37903 4.44040 4.50950 4.58311 4.60189 4.67701 4.69327 4.81149 4.88655 4.90939 4.98651 5.03236 5.08447 5.15884 5.27293 5.30155 5.30765 5.31421 5.33518 5.41781 5.46596 5.47900 5.58271 5.90752 6.00554 6.35094 6.76810 7.12790 7.41451 7.69551 8.24588 8.46364 9.38599 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.004511 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.348659 B = 6205.565987 C = 9402.209271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.126 4.126 6 C 0.101 3.899 7 N -0.616 5.616 8 C 0.459 3.541 9 O -0.514 6.514 10 C -0.117 4.117 11 C -0.104 4.104 12 C 0.133 3.867 13 N -0.383 5.383 14 C 0.260 3.740 15 N -0.580 5.580 16 C 0.185 3.815 17 N -0.363 5.363 18 C 0.154 3.846 19 H 0.048 0.952 20 C 0.168 3.832 21 N -0.699 5.699 22 C -0.208 4.208 23 H 0.057 0.943 24 C -0.084 4.084 25 N -0.972 5.972 26 Si 0.961 3.039 27 H -0.292 1.292 28 H -0.294 1.294 29 H -0.275 1.275 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.027 0.973 42 H 0.045 0.955 43 H 0.158 0.842 44 H 0.102 0.898 45 H 0.271 0.729 46 H 0.230 0.770 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.366 0.634 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 4.796 22.649 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.164 4.164 6 C -0.020 4.020 7 N -0.353 5.353 8 C 0.246 3.754 9 O -0.387 6.387 10 C -0.157 4.157 11 C -0.143 4.143 12 C 0.013 3.987 13 N -0.174 5.174 14 C -0.035 4.035 15 N -0.308 5.308 16 C -0.118 4.118 17 N -0.192 5.192 18 C 0.050 3.950 19 H 0.066 0.934 20 C 0.041 3.959 21 N -0.339 5.339 22 C -0.341 4.341 23 H 0.075 0.925 24 C -0.275 4.275 25 N -0.626 5.626 26 Si 0.792 3.208 27 H -0.220 1.220 28 H -0.220 1.220 29 H -0.201 1.201 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.176 0.824 44 H 0.120 0.880 45 H 0.286 0.714 46 H 0.247 0.753 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.197 0.803 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.958 4.765 21.671 25.205 hybrid contribution -0.532 -0.169 -1.742 1.829 sum 11.426 4.597 19.928 23.427 Atomic orbital electron populations 1.21845 0.94334 1.02108 1.02058 1.21396 0.96155 0.99406 0.93909 0.91453 1.21579 0.96272 1.00560 0.96352 1.21907 0.95170 1.01562 0.97795 1.22006 0.99684 0.96973 0.83351 1.48127 1.05341 1.62400 1.19403 1.21512 0.90952 0.79829 0.83091 1.91235 1.74179 1.44670 1.28649 1.21545 0.90012 1.04995 0.99139 1.21356 0.94265 1.00824 0.97853 1.22172 0.91354 1.03068 0.82108 1.50755 1.34329 1.25755 1.06517 1.27051 0.89604 0.89535 0.97335 1.70507 1.29855 1.27548 1.02933 1.26433 0.92365 0.90766 1.02233 1.78131 1.25418 1.25842 0.89763 1.21265 0.80861 0.97982 0.94932 0.93365 1.20868 0.95202 0.94029 0.85756 1.42232 1.71272 1.18486 1.01929 1.19393 1.28646 0.99414 0.86605 0.92489 1.25300 1.03970 0.97589 1.00635 1.69802 1.52219 1.12215 1.28333 0.85367 0.78104 0.76518 0.80829 1.21976 1.22049 1.20116 0.92686 0.90218 0.94017 0.89764 0.91899 0.87945 0.91247 0.91808 0.87050 0.84697 0.87124 0.95385 0.93599 0.82437 0.87958 0.71389 0.75349 0.96824 0.97133 0.80269 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.99 71.98 0.65 -2.74 16 2 C -0.09 -2.12 2.34 -10.71 -0.03 -2.14 16 3 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -1.76 5.17 30.62 0.16 -1.60 16 5 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 6 C 0.10 1.70 6.35 86.36 0.55 2.25 16 7 N -0.62 -17.80 2.97 -795.04 -2.36 -20.16 16 8 C 0.46 15.98 7.31 87.66 0.64 16.62 16 9 O -0.51 -25.43 9.70 -3.02 -0.03 -25.46 16 10 C -0.12 -2.52 4.05 29.85 0.12 -2.40 16 11 C -0.10 -2.90 4.71 30.59 0.14 -2.75 16 12 C 0.13 2.23 6.55 86.38 0.57 2.80 16 13 N -0.38 -9.32 3.69 -352.06 -1.30 -10.62 16 14 C 0.26 5.09 12.63 180.36 2.28 7.36 16 15 N -0.58 -15.42 11.19 -204.01 -2.28 -17.71 16 16 C 0.18 5.41 13.03 180.76 2.36 7.76 16 17 N -0.36 -12.22 12.57 -61.25 -0.77 -12.99 16 18 C 0.15 5.14 2.36 44.97 0.11 5.25 16 19 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 20 C 0.17 7.63 4.85 86.38 0.42 8.05 16 21 N -0.70 -39.89 3.20 -343.47 -1.10 -40.99 16 22 C -0.21 -13.15 9.73 84.03 0.82 -12.33 16 23 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 24 C -0.08 -5.43 5.50 84.86 0.47 -4.96 16 25 N -0.97 -65.92 13.06 21.65 0.28 -65.63 16 26 Si 0.96 52.24 29.55 68.60 2.03 54.27 16 27 H -0.29 -15.82 7.11 99.48 0.71 -15.12 16 28 H -0.29 -15.89 7.11 99.48 0.71 -15.18 16 29 H -0.27 -14.11 7.11 99.48 0.71 -13.40 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.15 6.38 -2.39 -0.02 1.14 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 1.17 5.93 -2.39 -0.01 1.15 16 39 H 0.14 1.56 7.90 -2.39 -0.02 1.54 16 40 H 0.11 1.89 7.74 -2.39 -0.02 1.87 16 41 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.05 1.50 8.10 -2.38 -0.02 1.49 16 43 H 0.16 0.81 8.09 -2.39 -0.02 0.79 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.27 1.73 8.06 -2.91 -0.02 1.70 16 46 H 0.23 5.34 8.06 -2.91 -0.02 5.32 16 47 H 0.01 0.64 6.15 -2.39 -0.01 0.63 16 48 H 0.01 0.54 6.37 -2.38 -0.02 0.53 16 49 H 0.37 22.42 7.22 -92.71 -0.67 21.75 16 50 H 0.24 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -97.33 392.53 4.16 -93.17 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.26 Total: 26.33 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 9.43 Total: 19.80 kcal Atomic # 7 Polarization: -160.57 SS G_CDS: -7.53 Total: -168.10 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.03 Total: -25.46 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.03 Total: 54.27 kcal Total: -97.33 4.16 -93.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496486533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.962 kcal (2) G-P(sol) polarization free energy of solvation -97.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds