Wall clock time and date at job start Tue Mar 31 2020 23:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49946 * 2 1 4 4 C 1.53043 * 109.47268 * 239.92034 * 2 1 3 5 5 C 1.53042 * 109.53829 * 301.36594 * 4 2 1 6 6 C 1.53187 * 109.33791 * 298.68463 * 5 4 2 7 7 N 1.46928 * 108.77988 * 54.61882 * 6 5 4 8 8 C 1.34772 * 120.63597 * 126.36990 * 7 6 5 9 9 O 1.21272 * 120.00524 * 174.43904 * 8 7 6 10 10 C 1.50704 * 119.99592 * 354.43684 * 8 7 6 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47062 * 179.97438 * 11 10 8 13 13 N 1.46495 * 109.47087 * 179.97438 * 12 11 10 14 14 C 1.34422 * 126.82515 * 124.71207 * 13 12 11 15 15 N 1.30834 * 108.08033 * 179.89073 * 14 13 12 16 16 C 1.33238 * 109.82814 * 0.38751 * 15 14 13 17 17 N 1.30717 * 108.94488 * 359.75587 * 16 15 14 18 18 C 1.46926 * 118.73746 * 306.39260 * 7 6 5 19 19 H 1.09006 * 109.59007 * 293.67679 * 18 7 6 20 20 C 1.53002 * 109.58751 * 173.39360 * 18 7 6 21 21 N 1.46499 * 109.47099 * 181.88801 * 20 18 7 22 22 C 1.36937 * 119.99946 * 184.94838 * 21 20 18 23 23 H 1.07994 * 119.99885 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99652 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00808 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99666 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46708 * 60.00239 * 26 24 22 28 28 H 1.48498 * 109.47110 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47267 * 300.00331 * 26 24 22 30 30 H 1.08998 * 109.47192 * 299.93489 * 1 2 3 31 31 H 1.09003 * 109.46512 * 59.93467 * 1 2 3 32 32 H 1.08995 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.43287 * 181.35937 * 4 2 1 34 34 H 1.08999 * 109.48469 * 61.40208 * 4 2 1 35 35 H 1.09000 * 109.49687 * 178.71478 * 5 4 2 36 36 H 1.09005 * 109.49755 * 58.64667 * 5 4 2 37 37 H 1.09005 * 109.59058 * 174.40786 * 6 5 4 38 38 H 1.08999 * 109.59166 * 294.83090 * 6 5 4 39 39 H 1.09006 * 109.47484 * 300.00146 * 10 8 7 40 40 H 1.08998 * 109.47173 * 60.00243 * 10 8 7 41 41 H 1.08993 * 109.46969 * 299.99974 * 11 10 8 42 42 H 1.08998 * 109.47042 * 60.00017 * 11 10 8 43 43 H 1.09001 * 109.47010 * 300.00451 * 12 11 10 44 44 H 1.08998 * 109.47049 * 60.00179 * 12 11 10 45 45 H 1.08004 * 125.96451 * 0.03643 * 14 13 12 46 46 H 1.07998 * 125.52772 * 179.72824 * 16 15 14 47 47 H 1.09002 * 109.46813 * 301.88856 * 20 18 7 48 48 H 1.08995 * 109.46920 * 61.88970 * 20 18 7 49 49 H 0.97004 * 120.00118 * 4.95100 * 21 20 18 50 50 H 0.96990 * 120.00538 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0402 -0.7232 -1.2486 5 6 1.5030 -2.1561 -1.2655 6 6 2.0140 -2.9040 -0.0300 7 7 1.6515 -2.1378 1.1702 8 6 0.9740 -2.7212 2.1787 9 8 0.7686 -2.1090 3.2052 10 6 0.4716 -4.1342 2.0306 11 6 -0.2587 -4.5523 3.3085 12 6 -0.7694 -5.9868 3.1580 13 7 -1.4681 -6.3873 4.3817 14 6 -2.7259 -6.8521 4.4759 15 7 -2.9747 -7.0975 5.7367 16 6 -1.9076 -6.7952 6.4751 17 7 -0.9589 -6.3562 5.6902 18 6 2.0413 -0.7235 1.2498 19 1 3.1274 -0.6460 1.3008 20 6 1.4228 -0.0905 2.4979 21 7 1.7759 1.3303 2.5509 22 6 1.4179 2.0848 3.6362 23 1 0.8749 1.6325 4.4528 24 6 1.7519 3.4312 3.6860 25 7 2.4132 3.9826 2.6906 26 14 1.2629 4.4606 5.1662 27 1 1.8814 3.8918 6.3907 28 1 1.7345 5.8558 4.9764 29 1 -0.2152 4.4521 5.3086 30 1 -0.3633 0.5128 0.8905 31 1 -0.3632 0.5149 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 -0.7440 -1.2358 34 1 1.6977 -0.1965 -2.1393 35 1 1.8481 -2.6634 -2.1664 36 1 0.4132 -2.1363 -1.2538 37 1 1.5554 -3.8919 0.0148 38 1 3.0979 -3.0043 -0.0859 39 1 -0.2149 -4.1892 1.1857 40 1 1.3145 -4.8034 1.8580 41 1 0.4274 -4.4973 4.1536 42 1 -1.1017 -3.8831 3.4807 43 1 -1.4556 -6.0413 2.3128 44 1 0.0733 -6.6562 2.9855 45 1 -3.4108 -6.9996 3.6540 46 1 -1.8379 -6.8961 7.5481 47 1 0.3385 -0.1943 2.4586 48 1 1.8039 -0.5929 3.3869 49 1 2.2632 1.7367 1.8172 50 1 2.6469 4.9233 2.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496486534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:35 Heat of formation + Delta-G solvation = 78.606658 kcal Electronic energy + Delta-G solvation = -29745.735011 eV Core-core repulsion = 25810.815764 eV Total energy + Delta-G solvation = -3934.919248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 14.53 seconds Orbital eigenvalues (eV) -42.26155 -40.63852 -37.86338 -35.83569 -34.81542 -33.36487 -32.46054 -31.91459 -31.41588 -30.05208 -28.11412 -26.67840 -25.93063 -24.29784 -23.40551 -22.80110 -22.23033 -21.46648 -20.98929 -19.87630 -18.30833 -17.62495 -17.06635 -16.68307 -16.38933 -15.88358 -15.41622 -15.07319 -14.93692 -14.86194 -14.42476 -14.27715 -14.11883 -13.77905 -13.60543 -13.29306 -13.16650 -12.82362 -12.81902 -12.52187 -12.22684 -12.06607 -11.91368 -11.81233 -11.42111 -11.28954 -11.12505 -10.95373 -10.83845 -10.73682 -10.57652 -10.33277 -10.24651 -10.14477 -10.02905 -9.97092 -9.92667 -9.60721 -8.85498 -8.66547 -8.32752 -6.73772 -5.64757 -2.90729 1.39935 2.03576 2.75010 2.77481 3.05150 3.52959 3.56031 3.58637 4.04688 4.06962 4.33308 4.51684 4.64186 4.68708 4.72996 4.79548 4.84193 4.85361 4.93282 5.02672 5.08791 5.16670 5.19157 5.32257 5.37544 5.52920 5.68902 5.71969 5.73165 5.79269 5.92345 5.96483 5.97690 6.00081 6.03325 6.03896 6.19987 6.26988 6.29612 6.38159 6.43341 6.53674 6.72662 6.81245 7.13811 7.33634 7.59482 7.84184 7.85712 8.38890 8.57261 9.66035 10.25548 10.60281 11.58800 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.003092 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.119564 B = 9052.873127 C =11542.774303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.109 3.891 7 N -0.605 5.605 8 C 0.506 3.494 9 O -0.512 6.512 10 C -0.137 4.137 11 C -0.117 4.117 12 C 0.129 3.871 13 N -0.377 5.377 14 C 0.251 3.749 15 N -0.550 5.550 16 C 0.195 3.805 17 N -0.312 5.312 18 C 0.144 3.856 19 H 0.069 0.931 20 C 0.159 3.841 21 N -0.736 5.736 22 C -0.224 4.224 23 H 0.069 0.931 24 C -0.018 4.018 25 N -0.939 5.939 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.218 0.782 46 H 0.216 0.784 47 H 0.029 0.971 48 H 0.053 0.947 49 H 0.378 0.622 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -24.556 -9.802 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.340 5.340 8 C 0.293 3.707 9 O -0.387 6.387 10 C -0.178 4.178 11 C -0.155 4.155 12 C 0.007 3.993 13 N -0.168 5.168 14 C -0.046 4.046 15 N -0.277 5.277 16 C -0.108 4.108 17 N -0.139 5.139 18 C 0.041 3.959 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.382 5.382 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.213 4.213 25 N -0.589 5.589 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.234 0.766 46 H 0.233 0.767 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.212 0.788 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.922 -24.077 -8.766 26.092 hybrid contribution -0.076 0.807 0.065 0.814 sum -4.998 -23.270 -8.701 25.341 Atomic orbital electron populations 1.21810 0.94989 1.00704 1.02244 1.21450 0.96780 1.00271 0.93345 0.89101 1.21578 1.00396 0.95027 0.98361 1.21959 1.01694 0.96709 0.97104 1.21707 1.00264 0.94725 0.84773 1.48129 1.56477 1.11555 1.17856 1.20451 0.78468 0.88263 0.83479 1.90859 1.56045 1.63670 1.28121 1.21633 1.01493 0.95349 0.99354 1.21599 1.02018 0.93413 0.98519 1.21902 0.97867 0.97611 0.81881 1.50573 1.11448 1.47794 1.06951 1.26067 0.86621 0.95041 0.96884 1.70530 1.29252 1.26339 1.01622 1.26034 0.86689 0.96770 1.01292 1.78108 1.23468 1.24647 0.87689 1.21595 0.98731 0.78388 0.97155 0.91347 1.21318 0.97116 0.84871 0.93378 1.42556 1.68528 1.04549 1.22613 1.19189 1.28547 0.90945 0.96911 0.91330 1.24681 1.01637 0.96894 0.98133 1.69638 1.45427 1.12008 1.31850 0.86284 0.78033 0.79454 0.82579 1.21384 1.21831 1.21424 0.91128 0.93546 0.93590 0.91991 0.91830 0.91227 0.91138 0.90114 0.91451 0.88923 0.88911 0.89351 0.90310 0.88004 0.89191 0.76601 0.76738 0.95373 0.92897 0.78821 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.20 37.16 0.30 -1.86 16 2 C -0.10 -1.52 2.53 -90.50 -0.23 -1.75 16 3 H 0.09 1.65 6.88 -51.93 -0.36 1.29 16 4 C -0.12 -1.31 5.43 -26.69 -0.14 -1.45 16 5 C -0.14 -1.17 5.74 -26.61 -0.15 -1.32 16 6 C 0.11 0.93 6.35 -3.71 -0.02 0.91 16 7 N -0.61 -7.88 2.41 -165.22 -0.40 -8.28 16 8 C 0.51 6.98 7.53 -10.99 -0.08 6.90 16 9 O -0.51 -9.72 11.54 5.56 0.06 -9.66 16 10 C -0.14 -1.10 4.05 -27.88 -0.11 -1.22 16 11 C -0.12 -1.09 4.72 -26.73 -0.13 -1.22 16 12 C 0.13 0.79 6.55 -4.04 -0.03 0.76 16 13 N -0.38 -3.49 3.69 -62.63 -0.23 -3.72 16 14 C 0.25 2.06 12.63 -90.66 -1.14 0.92 16 15 N -0.55 -6.01 11.19 -15.83 -0.18 -6.18 16 16 C 0.20 2.10 13.03 -91.81 -1.20 0.90 16 17 N -0.31 -3.76 12.57 29.29 0.37 -3.39 16 18 C 0.14 2.43 2.81 -67.60 -0.19 2.24 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 20 C 0.16 3.54 3.59 -4.04 -0.01 3.53 16 21 N -0.74 -19.46 5.38 -59.91 -0.32 -19.78 16 22 C -0.22 -6.65 9.99 -15.06 -0.15 -6.80 16 23 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 25 N -0.94 -29.10 13.06 55.49 0.72 -28.38 16 26 Si 0.90 23.53 29.55 -169.99 -5.02 18.50 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.07 1.35 6.38 -51.93 -0.33 1.02 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.63 5.97 -51.93 -0.31 0.32 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 37 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 40 H 0.09 0.53 7.71 -51.93 -0.40 0.13 16 41 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.10 0.26 8.09 -51.93 -0.42 -0.16 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.22 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.22 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.03 0.67 5.52 -51.93 -0.29 0.38 16 48 H 0.05 1.32 6.24 -51.93 -0.32 0.99 16 49 H 0.38 10.21 6.35 -40.82 -0.26 9.95 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -38.10 388.15 -10.46 -48.56 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.93 Total: 6.58 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.39 Total: -0.11 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -0.04 Total: -69.72 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.06 Total: -9.66 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.10 -10.46 -48.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496486534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.167 kcal (2) G-P(sol) polarization free energy of solvation -38.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.53 seconds