Wall clock time and date at job start Tue Mar 31 2020 23:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49946 * 2 1 4 4 C 1.53043 * 109.47268 * 239.92034 * 2 1 3 5 5 C 1.53042 * 109.53829 * 301.36594 * 4 2 1 6 6 C 1.53187 * 109.33791 * 298.68463 * 5 4 2 7 7 N 1.46928 * 108.77988 * 54.61882 * 6 5 4 8 8 C 1.34772 * 120.63597 * 126.36990 * 7 6 5 9 9 O 1.21272 * 120.00524 * 174.43904 * 8 7 6 10 10 C 1.50704 * 119.99592 * 354.43684 * 8 7 6 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47062 * 179.97438 * 11 10 8 13 13 N 1.46495 * 109.47087 * 179.97438 * 12 11 10 14 14 C 1.34422 * 126.82515 * 124.71207 * 13 12 11 15 15 N 1.30834 * 108.08033 * 179.89073 * 14 13 12 16 16 C 1.33238 * 109.82814 * 0.38751 * 15 14 13 17 17 N 1.30717 * 108.94488 * 359.75587 * 16 15 14 18 18 C 1.46926 * 118.73746 * 306.39260 * 7 6 5 19 19 H 1.09006 * 109.59007 * 293.67679 * 18 7 6 20 20 C 1.53002 * 109.58751 * 173.39360 * 18 7 6 21 21 N 1.46499 * 109.47099 * 181.88801 * 20 18 7 22 22 C 1.36937 * 119.99946 * 184.94838 * 21 20 18 23 23 H 1.07994 * 119.99885 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99652 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00808 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99666 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46708 * 60.00239 * 26 24 22 28 28 H 1.48498 * 109.47110 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47267 * 300.00331 * 26 24 22 30 30 H 1.08998 * 109.47192 * 299.93489 * 1 2 3 31 31 H 1.09003 * 109.46512 * 59.93467 * 1 2 3 32 32 H 1.08995 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.43287 * 181.35937 * 4 2 1 34 34 H 1.08999 * 109.48469 * 61.40208 * 4 2 1 35 35 H 1.09000 * 109.49687 * 178.71478 * 5 4 2 36 36 H 1.09005 * 109.49755 * 58.64667 * 5 4 2 37 37 H 1.09005 * 109.59058 * 174.40786 * 6 5 4 38 38 H 1.08999 * 109.59166 * 294.83090 * 6 5 4 39 39 H 1.09006 * 109.47484 * 300.00146 * 10 8 7 40 40 H 1.08998 * 109.47173 * 60.00243 * 10 8 7 41 41 H 1.08993 * 109.46969 * 299.99974 * 11 10 8 42 42 H 1.08998 * 109.47042 * 60.00017 * 11 10 8 43 43 H 1.09001 * 109.47010 * 300.00451 * 12 11 10 44 44 H 1.08998 * 109.47049 * 60.00179 * 12 11 10 45 45 H 1.08004 * 125.96451 * 0.03643 * 14 13 12 46 46 H 1.07998 * 125.52772 * 179.72824 * 16 15 14 47 47 H 1.09002 * 109.46813 * 301.88856 * 20 18 7 48 48 H 1.08995 * 109.46920 * 61.88970 * 20 18 7 49 49 H 0.97004 * 120.00118 * 4.95100 * 21 20 18 50 50 H 0.96990 * 120.00538 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0402 -0.7232 -1.2486 5 6 1.5030 -2.1561 -1.2655 6 6 2.0140 -2.9040 -0.0300 7 7 1.6515 -2.1378 1.1702 8 6 0.9740 -2.7212 2.1787 9 8 0.7686 -2.1090 3.2052 10 6 0.4716 -4.1342 2.0306 11 6 -0.2587 -4.5523 3.3085 12 6 -0.7694 -5.9868 3.1580 13 7 -1.4681 -6.3873 4.3817 14 6 -2.7259 -6.8521 4.4759 15 7 -2.9747 -7.0975 5.7367 16 6 -1.9076 -6.7952 6.4751 17 7 -0.9589 -6.3562 5.6902 18 6 2.0413 -0.7235 1.2498 19 1 3.1274 -0.6460 1.3008 20 6 1.4228 -0.0905 2.4979 21 7 1.7759 1.3303 2.5509 22 6 1.4179 2.0848 3.6362 23 1 0.8749 1.6325 4.4528 24 6 1.7519 3.4312 3.6860 25 7 2.4132 3.9826 2.6906 26 14 1.2629 4.4606 5.1662 27 1 1.8814 3.8918 6.3907 28 1 1.7345 5.8558 4.9764 29 1 -0.2152 4.4521 5.3086 30 1 -0.3633 0.5128 0.8905 31 1 -0.3632 0.5149 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 -0.7440 -1.2358 34 1 1.6977 -0.1965 -2.1393 35 1 1.8481 -2.6634 -2.1664 36 1 0.4132 -2.1363 -1.2538 37 1 1.5554 -3.8919 0.0148 38 1 3.0979 -3.0043 -0.0859 39 1 -0.2149 -4.1892 1.1857 40 1 1.3145 -4.8034 1.8580 41 1 0.4274 -4.4973 4.1536 42 1 -1.1017 -3.8831 3.4807 43 1 -1.4556 -6.0413 2.3128 44 1 0.0733 -6.6562 2.9855 45 1 -3.4108 -6.9996 3.6540 46 1 -1.8379 -6.8961 7.5481 47 1 0.3385 -0.1943 2.4586 48 1 1.8039 -0.5929 3.3869 49 1 2.2632 1.7367 1.8172 50 1 2.6469 4.9233 2.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496486534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:28 Heat of formation + Delta-G solvation = 53.554820 kcal Electronic energy + Delta-G solvation = -29746.821341 eV Core-core repulsion = 25810.815764 eV Total energy + Delta-G solvation = -3936.005577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -42.94002 -41.76715 -38.97022 -36.77271 -36.36140 -34.64366 -33.79964 -32.97002 -32.13887 -31.75252 -29.18427 -27.75355 -27.26153 -25.64249 -24.75300 -23.97481 -22.87222 -22.46657 -22.00941 -20.89764 -19.48088 -19.10774 -18.32637 -17.74950 -17.24496 -16.93820 -16.45669 -16.35747 -16.05368 -15.82366 -15.70025 -15.36983 -15.07399 -14.98206 -14.78638 -14.71353 -14.48550 -14.00167 -13.63544 -13.59943 -13.36413 -13.18624 -13.06804 -12.82899 -12.76265 -12.61415 -12.54154 -12.38205 -12.10493 -11.99932 -11.95025 -11.81555 -11.76803 -11.33293 -11.21404 -10.98437 -10.95946 -10.78252 -10.59193 -10.07954 -9.50601 -8.95693 -7.98728 -5.25869 0.74099 1.40013 1.44038 1.48914 1.50613 1.74583 2.02737 2.05103 2.53384 3.33551 3.41933 3.55789 3.63621 3.77990 3.86292 3.89747 3.95063 4.10960 4.14677 4.15759 4.18364 4.25638 4.33813 4.43181 4.50447 4.54798 4.57776 4.64009 4.68822 4.74395 4.82465 4.94777 4.97274 5.02586 5.07192 5.16474 5.23405 5.27109 5.31005 5.33733 5.37179 5.40323 5.43420 5.48755 5.58716 5.75516 6.00262 6.24619 6.58532 7.15088 7.30126 7.34731 8.07079 8.33597 9.24653 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.003092 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.119564 B = 9052.873127 C =11542.774303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 H 0.051 0.949 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.100 3.900 7 N -0.603 5.603 8 C 0.492 3.508 9 O -0.580 6.580 10 C -0.120 4.120 11 C -0.110 4.110 12 C 0.130 3.870 13 N -0.383 5.383 14 C 0.259 3.741 15 N -0.584 5.584 16 C 0.186 3.814 17 N -0.358 5.358 18 C 0.154 3.846 19 H 0.056 0.944 20 C 0.174 3.826 21 N -0.743 5.743 22 C -0.243 4.243 23 H 0.058 0.942 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.971 3.029 27 H -0.282 1.282 28 H -0.286 1.286 29 H -0.280 1.280 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.152 0.848 44 H 0.109 0.891 45 H 0.266 0.734 46 H 0.232 0.768 47 H 0.011 0.989 48 H 0.021 0.979 49 H 0.372 0.628 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -27.619 -12.977 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.167 4.167 6 C -0.021 4.021 7 N -0.336 5.336 8 C 0.282 3.718 9 O -0.460 6.460 10 C -0.160 4.160 11 C -0.149 4.149 12 C 0.010 3.990 13 N -0.173 5.173 14 C -0.036 4.036 15 N -0.312 5.312 16 C -0.117 4.117 17 N -0.186 5.186 18 C 0.049 3.951 19 H 0.074 0.926 20 C 0.049 3.951 21 N -0.388 5.388 22 C -0.375 4.375 23 H 0.076 0.924 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.800 3.200 27 H -0.208 1.208 28 H -0.211 1.211 29 H -0.207 1.207 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.170 0.830 44 H 0.127 0.873 45 H 0.281 0.719 46 H 0.248 0.752 47 H 0.029 0.971 48 H 0.039 0.961 49 H 0.205 0.795 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.661 -27.193 -11.994 30.255 hybrid contribution 0.154 1.757 1.043 2.049 sum -5.508 -25.436 -10.951 28.235 Atomic orbital electron populations 1.21705 0.94999 1.01605 1.00438 1.21353 0.96638 0.98601 0.94904 0.93097 1.21557 1.00625 0.96899 0.95817 1.21968 1.01761 0.94475 0.98530 1.22175 1.01535 0.95999 0.82382 1.48251 1.55941 1.09829 1.19594 1.21645 0.77430 0.90364 0.82358 1.90841 1.58498 1.65809 1.30807 1.21657 1.03363 0.91115 0.99883 1.21435 1.00058 0.95450 0.97921 1.22193 0.99786 0.95034 0.81981 1.50766 1.12027 1.47812 1.06732 1.26991 0.86550 0.92873 0.97234 1.70526 1.29770 1.27844 1.03082 1.26458 0.86643 0.96317 1.02278 1.78025 1.25023 1.26089 0.89503 1.21148 0.97432 0.81335 0.95169 0.92621 1.21133 0.96117 0.82645 0.95230 1.42706 1.68238 1.06247 1.21642 1.19436 1.28668 0.91867 0.97576 0.92443 1.25484 1.01878 0.97827 1.01123 1.69783 1.46256 1.12154 1.33510 0.85251 0.77890 0.77730 0.79140 1.20823 1.21122 1.20671 0.96034 0.92097 0.91256 0.91709 0.90830 0.87471 0.90849 0.85479 0.90465 0.84441 0.85106 0.93743 0.93506 0.83007 0.87256 0.71889 0.75183 0.97128 0.96105 0.79482 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.20 71.98 0.59 -3.46 16 2 C -0.10 -2.97 2.53 -10.71 -0.03 -3.00 16 3 H 0.05 1.97 6.88 -2.39 -0.02 1.96 16 4 C -0.11 -2.23 5.43 30.62 0.17 -2.07 16 5 C -0.13 -1.55 5.74 30.67 0.18 -1.37 16 6 C 0.10 1.23 6.35 86.36 0.55 1.78 16 7 N -0.60 -14.86 2.41 -795.03 -1.92 -16.77 16 8 C 0.49 13.31 7.53 87.66 0.66 13.97 16 9 O -0.58 -23.67 11.54 -3.00 -0.03 -23.70 16 10 C -0.12 -1.48 4.05 29.85 0.12 -1.36 16 11 C -0.11 -1.93 4.72 30.60 0.14 -1.78 16 12 C 0.13 1.11 6.55 86.38 0.57 1.68 16 13 N -0.38 -6.42 3.69 -352.07 -1.30 -7.72 16 14 C 0.26 3.64 12.63 180.36 2.28 5.92 16 15 N -0.58 -12.31 11.19 -204.00 -2.28 -14.59 16 16 C 0.19 4.08 13.03 180.76 2.36 6.43 16 17 N -0.36 -8.78 12.57 -61.25 -0.77 -9.55 16 18 C 0.15 5.38 2.81 44.98 0.13 5.51 16 19 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 20 C 0.17 8.39 3.59 86.38 0.31 8.70 16 21 N -0.74 -42.19 5.38 -343.46 -1.85 -44.04 16 22 C -0.24 -15.25 9.99 84.03 0.84 -14.41 16 23 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 24 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 25 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 26 Si 0.97 49.76 29.55 68.60 2.03 51.79 16 27 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 30 H 0.02 0.85 6.38 -2.39 -0.02 0.84 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.79 5.97 -2.39 -0.01 1.77 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.89 6.34 -2.38 -0.02 0.88 16 37 H 0.13 0.46 5.93 -2.38 -0.01 0.44 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.14 0.58 7.92 -2.38 -0.02 0.56 16 40 H 0.13 0.73 7.71 -2.39 -0.02 0.71 16 41 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 42 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.15 -0.19 8.09 -2.39 -0.02 -0.21 16 44 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.27 0.59 8.06 -2.91 -0.02 0.57 16 46 H 0.23 3.66 8.06 -2.91 -0.02 3.63 16 47 H 0.01 0.56 5.52 -2.39 -0.01 0.55 16 48 H 0.02 1.15 6.24 -2.39 -0.01 1.13 16 49 H 0.37 21.58 6.35 -92.71 -0.59 20.99 16 50 H 0.25 15.55 8.31 -92.72 -0.77 14.78 16 Total: -1.00 -94.75 388.15 3.84 -90.91 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.36 Total: 22.58 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 9.32 Total: 12.62 kcal Atomic # 7 Polarization: -146.36 SS G_CDS: -7.83 Total: -154.20 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.03 Total: -23.70 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.03 Total: 51.79 kcal Total: -94.75 3.84 -90.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496486534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.467 kcal (2) G-P(sol) polarization free energy of solvation -94.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds