Wall clock time and date at job start Wed Apr 1 2020 00:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.88378 * 2 1 4 4 C 1.55121 * 111.19127 * 236.06026 * 2 1 3 5 5 N 1.47427 * 104.72708 * 279.19224 * 4 2 1 6 6 C 1.34778 * 125.65211 * 155.81673 * 5 4 2 7 7 O 1.21548 * 120.00106 * 179.69439 * 6 5 4 8 8 C 1.47876 * 119.99556 * 359.69330 * 6 5 4 9 9 N 1.34548 * 126.04801 * 0.02806 * 8 6 5 10 10 C 1.30878 * 107.26413 * 179.97438 * 9 8 6 11 11 N 1.34587 * 107.62633 * 0.26596 * 10 9 8 12 12 C 1.46493 * 125.74476 * 179.70032 * 11 10 9 13 13 C 1.53001 * 109.47318 * 74.99949 * 12 11 10 14 14 C 1.53005 * 109.46888 * 194.99331 * 12 11 10 15 15 C 1.52994 * 109.47351 * 314.99463 * 12 11 10 16 16 N 1.28855 * 108.50086 * 359.55318 * 11 10 9 17 17 C 1.47023 * 108.69716 * 335.55422 * 5 4 2 18 18 C 1.54324 * 107.27489 * 1.28797 * 17 5 4 19 19 H 1.09000 * 110.71681 * 263.82937 * 18 17 5 20 20 C 1.52995 * 110.72003 * 140.73220 * 18 17 5 21 21 N 1.46507 * 109.47220 * 66.45411 * 20 18 17 22 22 C 1.36937 * 119.99990 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99889 * 359.97438 * 22 21 20 24 24 C 1.38806 * 119.99843 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00024 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48488 * 109.47172 * 59.99553 * 26 24 22 28 28 H 1.48502 * 109.47085 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46954 * 299.99875 * 26 24 22 30 30 H 1.09003 * 109.47374 * 296.12811 * 1 2 3 31 31 H 1.08995 * 109.46964 * 56.12398 * 1 2 3 32 32 H 1.09005 * 109.47279 * 176.12478 * 1 2 3 33 33 H 1.09000 * 110.49674 * 160.34795 * 4 2 1 34 34 H 1.09004 * 110.34705 * 37.95870 * 4 2 1 35 35 H 1.08002 * 126.18265 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47630 * 59.99547 * 13 12 11 37 37 H 1.09004 * 109.47388 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47102 * 299.99423 * 13 12 11 39 39 H 1.09001 * 109.47070 * 60.00224 * 14 12 11 40 40 H 1.09000 * 109.47356 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47377 * 300.00188 * 14 12 11 42 42 H 1.08998 * 109.47510 * 60.00251 * 15 12 11 43 43 H 1.09000 * 109.46944 * 180.02562 * 15 12 11 44 44 H 1.09001 * 109.47109 * 300.00083 * 15 12 11 45 45 H 1.09004 * 109.88129 * 120.70504 * 17 5 4 46 46 H 1.09000 * 109.88169 * 241.86660 * 17 5 4 47 47 H 1.09001 * 109.47266 * 186.45104 * 20 18 17 48 48 H 1.09002 * 109.47286 * 306.45254 * 20 18 17 49 49 H 0.96997 * 119.99553 * 359.97438 * 21 20 18 50 50 H 0.97008 * 119.99913 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0907 -0.8075 -1.1999 5 7 2.0138 -2.2163 -0.7723 6 6 1.9470 -3.2837 -1.5924 7 8 1.8924 -4.4052 -1.1271 8 6 1.9402 -3.0903 -3.0585 9 7 1.9965 -1.9098 -3.7016 10 6 1.9681 -2.1649 -4.9850 11 7 1.8886 -3.5002 -5.1334 12 6 1.8271 -4.2173 -6.4093 13 6 3.2124 -4.2225 -7.0587 14 6 1.3737 -5.6578 -6.1634 15 6 0.8309 -3.5207 -7.3384 16 7 1.8787 -4.0417 -3.9642 17 6 2.0285 -2.2643 0.6971 18 6 2.0861 -0.8073 1.2027 19 1 3.1132 -0.5153 1.4212 20 6 1.1998 -0.6271 2.4367 21 7 1.7527 -1.3996 3.5520 22 6 1.1240 -1.3919 4.7685 23 1 0.2208 -0.8159 4.9058 24 6 1.6476 -2.1242 5.8250 25 7 2.7481 -2.8265 5.6575 26 14 0.7903 -2.1130 7.4847 27 1 -0.5899 -2.6393 7.3325 28 1 1.5442 -2.9674 8.4370 29 1 0.7354 -0.7229 8.0041 30 1 -0.3634 0.4526 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 -0.3634 -1.0253 -0.0695 33 1 3.1252 -0.5273 -1.3985 34 1 1.4764 -0.6459 -2.0857 35 1 1.9980 -1.4355 -5.7809 36 1 3.9222 -4.7188 -6.3968 37 1 3.1668 -4.7565 -8.0079 38 1 3.5354 -3.1964 -7.2340 39 1 0.3868 -5.6541 -5.7007 40 1 1.3284 -6.1915 -7.1127 41 1 2.0834 -6.1541 -5.5015 42 1 1.1538 -2.4945 -7.5136 43 1 0.7849 -4.0546 -8.2876 44 1 -0.1560 -3.5170 -6.8757 45 1 1.1218 -2.7474 1.0613 46 1 2.9063 -2.8111 1.0414 47 1 1.1646 0.4280 2.7078 48 1 0.1923 -0.9792 2.2151 49 1 2.5637 -1.9172 3.4285 50 1 3.1138 -3.3386 6.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501136328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:59 Heat of formation + Delta-G solvation = 72.962560 kcal Electronic energy + Delta-G solvation = -29427.093476 eV Core-core repulsion = 25491.929482 eV Total energy + Delta-G solvation = -3935.163994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.70408 -39.92895 -37.98631 -37.50016 -34.60267 -33.07896 -32.41523 -31.20943 -31.03011 -28.94470 -28.16576 -28.02647 -26.67863 -25.85889 -24.13988 -23.31846 -22.71187 -21.42786 -20.45027 -19.59243 -19.04864 -17.61792 -16.99412 -16.85534 -16.56163 -16.03778 -15.68617 -14.89334 -14.81678 -14.67159 -14.55209 -14.15728 -13.73617 -13.47885 -13.38591 -13.07451 -13.03820 -12.97807 -12.87726 -12.49618 -12.44042 -12.35158 -12.14799 -11.98409 -11.89376 -11.69028 -11.54633 -11.45770 -10.95553 -10.77161 -10.62353 -10.60997 -10.34927 -10.25915 -10.17765 -9.99778 -9.88130 -9.70673 -9.58870 -8.79510 -8.37993 -6.84420 -5.68418 -2.97267 1.31293 1.84301 1.97398 2.97658 3.43994 3.49990 3.53978 3.55338 3.76333 3.92523 4.02691 4.13560 4.37653 4.54933 4.64506 4.74630 4.77312 4.89476 4.93225 4.96117 5.05104 5.10517 5.14429 5.19451 5.30495 5.45683 5.48767 5.62149 5.64823 5.69331 5.72331 5.79081 5.85173 6.00671 6.06580 6.12855 6.14915 6.19226 6.29698 6.30974 6.39870 6.47842 6.57220 6.59105 6.78392 6.94344 7.60865 7.76472 7.85280 8.29580 8.50117 9.61074 10.18987 10.53367 11.54317 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002249 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.471465 B =12446.040508 C =13086.009646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.106 3.894 5 N -0.596 5.596 6 C 0.622 3.378 7 O -0.520 6.520 8 C 0.150 3.850 9 N -0.480 5.480 10 C 0.184 3.816 11 N -0.294 5.294 12 C 0.167 3.833 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.160 4.160 16 N -0.248 5.248 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.085 0.915 20 C 0.163 3.837 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.220 0.780 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.026 0.974 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 2.985 -33.255 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.016 4.016 5 N -0.329 5.329 6 C 0.405 3.595 7 O -0.393 6.393 8 C -0.130 4.130 9 N -0.205 5.205 10 C -0.111 4.111 11 N -0.090 5.090 12 C 0.085 3.915 13 C -0.218 4.218 14 C -0.207 4.207 15 C -0.218 4.218 16 N -0.086 5.086 17 C -0.001 4.001 18 C -0.120 4.120 19 H 0.103 0.897 20 C 0.036 3.964 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.044 0.956 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.534 1.949 -32.564 32.658 hybrid contribution -0.046 -0.003 0.526 0.528 sum -1.580 1.947 -32.037 32.135 Atomic orbital electron populations 1.21757 0.94278 1.02047 1.01754 1.22409 0.96519 0.98995 0.94029 0.89230 1.22666 1.01422 0.79388 0.98148 1.48166 1.71047 1.06317 1.07403 1.15859 0.78098 0.83860 0.81644 1.90854 1.49981 1.22976 1.75460 1.23712 1.07832 0.85431 0.96018 1.71395 1.19969 1.26323 1.02816 1.26372 1.02510 0.86066 0.96139 1.47785 1.48883 1.06349 1.06006 1.21159 0.98039 0.93959 0.78371 1.22267 0.94230 1.03615 1.01680 1.22003 1.03339 0.92211 1.03149 1.22257 0.98779 1.01312 0.99425 1.74314 1.18442 1.25554 0.90320 1.22091 1.03301 0.97917 0.76793 1.22494 1.01163 0.93120 0.95262 0.89656 1.20714 0.94639 0.95158 0.85917 1.42383 1.31038 1.56838 1.07518 1.19159 1.06108 1.23910 0.87858 0.91262 1.24743 0.97857 1.00153 0.98259 1.69654 1.22098 1.34676 1.31673 0.86271 0.78653 0.77229 0.84042 1.21304 1.21744 1.21340 0.91505 0.93046 0.92621 0.91525 0.88373 0.76375 0.91194 0.89587 0.91342 0.91216 0.90319 0.90456 0.91124 0.89320 0.91110 0.90361 0.90967 0.95885 0.95597 0.78261 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.16 37.16 0.30 -1.51 16 2 C -0.10 -1.30 3.54 -88.36 -0.31 -1.62 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.11 1.41 5.62 -2.41 -0.01 1.39 16 5 N -0.60 -9.85 3.31 -171.48 -0.57 -10.41 16 6 C 0.62 11.33 7.86 -12.31 -0.10 11.24 16 7 O -0.52 -11.36 17.41 5.32 0.09 -11.27 16 8 C 0.15 2.30 7.79 -156.36 -1.22 1.08 16 9 N -0.48 -5.87 8.46 -12.36 -0.10 -5.97 16 10 C 0.18 1.56 11.71 -90.47 -1.06 0.50 16 11 N -0.29 -2.75 3.17 -49.84 -0.16 -2.91 16 12 C 0.17 0.91 1.23 -131.82 -0.16 0.75 16 13 C -0.16 -0.62 8.72 37.16 0.32 -0.30 16 14 C -0.15 -0.93 8.05 37.16 0.30 -0.63 16 15 C -0.16 -0.45 8.28 37.15 0.31 -0.14 16 16 N -0.25 -3.49 11.09 32.07 0.36 -3.13 16 17 C 0.12 2.19 5.83 -3.06 -0.02 2.17 16 18 C -0.10 -1.67 2.86 -88.79 -0.25 -1.93 16 19 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 20 C 0.16 3.29 4.53 -4.04 -0.02 3.27 16 21 N -0.73 -18.90 5.45 -59.91 -0.33 -19.22 16 22 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 26 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.24 6.05 -51.93 -0.31 0.93 16 35 H 0.22 0.77 7.53 -52.49 -0.40 0.37 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.63 8.02 -51.93 -0.42 0.22 16 42 H 0.07 0.10 7.34 -51.93 -0.38 -0.28 16 43 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 1.59 7.77 -51.93 -0.40 1.19 16 46 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.03 0.53 6.69 -51.93 -0.35 0.19 16 49 H 0.38 10.44 7.52 -40.82 -0.31 10.14 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -36.71 400.09 -9.51 -46.23 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.37 Total: 4.17 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.17 Total: 6.79 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.08 Total: -69.91 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.71 -9.51 -46.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501136328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.189 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds