Wall clock time and date at job start Wed Apr 1 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.88378 * 2 1 4 4 C 1.55121 * 111.19127 * 236.06026 * 2 1 3 5 5 N 1.47427 * 104.72708 * 279.19224 * 4 2 1 6 6 C 1.34778 * 125.65211 * 155.81673 * 5 4 2 7 7 O 1.21548 * 120.00106 * 179.69439 * 6 5 4 8 8 C 1.47876 * 119.99556 * 359.69330 * 6 5 4 9 9 N 1.34548 * 126.04801 * 0.02806 * 8 6 5 10 10 C 1.30878 * 107.26413 * 179.97438 * 9 8 6 11 11 N 1.34587 * 107.62633 * 0.26596 * 10 9 8 12 12 C 1.46493 * 125.74476 * 179.70032 * 11 10 9 13 13 C 1.53001 * 109.47318 * 74.99949 * 12 11 10 14 14 C 1.53005 * 109.46888 * 194.99331 * 12 11 10 15 15 C 1.52994 * 109.47351 * 314.99463 * 12 11 10 16 16 N 1.28855 * 108.50086 * 359.55318 * 11 10 9 17 17 C 1.47023 * 108.69716 * 335.55422 * 5 4 2 18 18 C 1.54324 * 107.27489 * 1.28797 * 17 5 4 19 19 H 1.09000 * 110.71681 * 263.82937 * 18 17 5 20 20 C 1.52995 * 110.72003 * 140.73220 * 18 17 5 21 21 N 1.46507 * 109.47220 * 66.45411 * 20 18 17 22 22 C 1.36937 * 119.99990 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99889 * 359.97438 * 22 21 20 24 24 C 1.38806 * 119.99843 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00024 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48488 * 109.47172 * 59.99553 * 26 24 22 28 28 H 1.48502 * 109.47085 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46954 * 299.99875 * 26 24 22 30 30 H 1.09003 * 109.47374 * 296.12811 * 1 2 3 31 31 H 1.08995 * 109.46964 * 56.12398 * 1 2 3 32 32 H 1.09005 * 109.47279 * 176.12478 * 1 2 3 33 33 H 1.09000 * 110.49674 * 160.34795 * 4 2 1 34 34 H 1.09004 * 110.34705 * 37.95870 * 4 2 1 35 35 H 1.08002 * 126.18265 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47630 * 59.99547 * 13 12 11 37 37 H 1.09004 * 109.47388 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47102 * 299.99423 * 13 12 11 39 39 H 1.09001 * 109.47070 * 60.00224 * 14 12 11 40 40 H 1.09000 * 109.47356 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47377 * 300.00188 * 14 12 11 42 42 H 1.08998 * 109.47510 * 60.00251 * 15 12 11 43 43 H 1.09000 * 109.46944 * 180.02562 * 15 12 11 44 44 H 1.09001 * 109.47109 * 300.00083 * 15 12 11 45 45 H 1.09004 * 109.88129 * 120.70504 * 17 5 4 46 46 H 1.09000 * 109.88169 * 241.86660 * 17 5 4 47 47 H 1.09001 * 109.47266 * 186.45104 * 20 18 17 48 48 H 1.09002 * 109.47286 * 306.45254 * 20 18 17 49 49 H 0.96997 * 119.99553 * 359.97438 * 21 20 18 50 50 H 0.97008 * 119.99913 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0907 -0.8075 -1.1999 5 7 2.0138 -2.2163 -0.7723 6 6 1.9470 -3.2837 -1.5924 7 8 1.8924 -4.4052 -1.1271 8 6 1.9402 -3.0903 -3.0585 9 7 1.9965 -1.9098 -3.7016 10 6 1.9681 -2.1649 -4.9850 11 7 1.8886 -3.5002 -5.1334 12 6 1.8271 -4.2173 -6.4093 13 6 3.2124 -4.2225 -7.0587 14 6 1.3737 -5.6578 -6.1634 15 6 0.8309 -3.5207 -7.3384 16 7 1.8787 -4.0417 -3.9642 17 6 2.0285 -2.2643 0.6971 18 6 2.0861 -0.8073 1.2027 19 1 3.1132 -0.5153 1.4212 20 6 1.1998 -0.6271 2.4367 21 7 1.7527 -1.3996 3.5520 22 6 1.1240 -1.3919 4.7685 23 1 0.2208 -0.8159 4.9058 24 6 1.6476 -2.1242 5.8250 25 7 2.7481 -2.8265 5.6575 26 14 0.7903 -2.1130 7.4847 27 1 -0.5899 -2.6393 7.3325 28 1 1.5442 -2.9674 8.4370 29 1 0.7354 -0.7229 8.0041 30 1 -0.3634 0.4526 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 -0.3634 -1.0253 -0.0695 33 1 3.1252 -0.5273 -1.3985 34 1 1.4764 -0.6459 -2.0857 35 1 1.9980 -1.4355 -5.7809 36 1 3.9222 -4.7188 -6.3968 37 1 3.1668 -4.7565 -8.0079 38 1 3.5354 -3.1964 -7.2340 39 1 0.3868 -5.6541 -5.7007 40 1 1.3284 -6.1915 -7.1127 41 1 2.0834 -6.1541 -5.5015 42 1 1.1538 -2.4945 -7.5136 43 1 0.7849 -4.0546 -8.2876 44 1 -0.1560 -3.5170 -6.8757 45 1 1.1218 -2.7474 1.0613 46 1 2.9063 -2.8111 1.0414 47 1 1.1646 0.4280 2.7078 48 1 0.1923 -0.9792 2.2151 49 1 2.5637 -1.9172 3.4285 50 1 3.1138 -3.3386 6.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501136328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:58 Heat of formation + Delta-G solvation = 48.971950 kcal Electronic energy + Delta-G solvation = -29428.133787 eV Core-core repulsion = 25491.929482 eV Total energy + Delta-G solvation = -3936.204305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.55536 -41.27176 -39.23648 -38.20739 -36.46318 -34.40256 -33.53414 -32.79325 -32.09296 -30.51931 -28.52460 -28.39448 -27.91766 -27.31153 -25.66850 -24.39656 -24.01748 -22.80273 -21.11258 -20.74300 -20.47134 -19.16093 -18.34829 -17.77079 -17.66343 -17.24351 -16.84169 -16.65679 -15.83935 -15.67989 -15.34175 -15.28412 -15.07837 -14.94381 -14.64199 -14.33188 -14.02122 -13.83668 -13.74396 -13.33362 -13.26702 -13.23496 -13.07922 -12.97152 -12.96435 -12.77189 -12.76195 -12.64973 -12.38836 -12.21764 -12.00072 -11.89306 -11.74178 -11.60552 -11.50381 -11.41013 -11.39055 -11.14086 -10.90221 -10.60259 -9.75568 -8.98068 -7.93312 -5.22377 0.28269 1.10617 1.11969 1.46527 1.50637 1.56474 1.82378 2.19031 2.56878 2.96124 3.23579 3.39277 3.47738 3.58356 3.66407 3.75871 3.78645 3.83242 3.88296 4.18407 4.26776 4.36611 4.51782 4.54784 4.58105 4.60195 4.63288 4.69045 4.73958 4.78505 4.80647 4.81119 4.87142 4.90304 4.98883 5.04910 5.09825 5.13833 5.19209 5.22470 5.23518 5.26546 5.31831 5.38780 5.50779 5.52367 5.72763 6.28313 6.30885 6.77836 7.08681 7.34280 8.10896 8.33013 9.30246 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002249 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.471465 B =12446.040508 C =13086.009646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.125 0.875 4 C 0.110 3.890 5 N -0.592 5.592 6 C 0.613 3.387 7 O -0.576 6.576 8 C 0.122 3.878 9 N -0.492 5.492 10 C 0.203 3.797 11 N -0.286 5.286 12 C 0.157 3.843 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.154 4.154 16 N -0.276 5.276 17 C 0.127 3.873 18 C -0.091 4.091 19 H 0.089 0.911 20 C 0.165 3.835 21 N -0.748 5.748 22 C -0.243 4.243 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.280 1.280 28 H -0.297 1.297 29 H -0.273 1.273 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.275 0.725 36 H 0.043 0.957 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.024 0.976 49 H 0.372 0.628 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 5.988 -36.801 37.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.143 0.857 4 C -0.011 4.011 5 N -0.324 5.324 6 C 0.399 3.601 7 O -0.453 6.453 8 C -0.156 4.156 9 N -0.218 5.218 10 C -0.091 4.091 11 N -0.083 5.083 12 C 0.077 3.923 13 C -0.213 4.213 14 C -0.208 4.208 15 C -0.212 4.212 16 N -0.117 5.117 17 C 0.004 3.996 18 C -0.110 4.110 19 H 0.107 0.893 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.206 1.206 28 H -0.223 1.223 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.291 0.709 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.203 0.797 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.231 5.023 -36.164 36.579 hybrid contribution 0.129 -0.960 1.427 1.724 sum -2.102 4.063 -34.738 35.038 Atomic orbital electron populations 1.21746 0.94011 1.00925 1.02938 1.22469 0.96631 1.00006 0.91418 0.85697 1.22868 1.02630 0.77001 0.98562 1.48222 1.70127 1.07700 1.06396 1.16385 0.77068 0.83327 0.83303 1.90798 1.52591 1.25065 1.76881 1.23073 1.10860 0.87096 0.94571 1.71282 1.20944 1.25144 1.04400 1.27357 0.99419 0.86350 0.96015 1.48203 1.47253 1.07134 1.05689 1.21669 1.00132 0.93345 0.77190 1.22287 0.92199 1.04838 1.02008 1.22022 1.01295 0.93464 1.03987 1.22300 0.96918 1.02726 0.99286 1.74239 1.18882 1.26605 0.91961 1.21838 1.00527 0.98838 0.78410 1.22368 1.00948 0.92493 0.95236 0.89274 1.20854 0.94873 0.94758 0.85644 1.42635 1.30683 1.57373 1.08369 1.19616 1.06059 1.22961 0.88862 0.90374 1.25622 0.98899 1.00530 1.02162 1.69833 1.23923 1.36060 1.32435 0.85183 0.77470 0.77563 0.79381 1.20605 1.22343 1.19916 0.91810 0.90083 0.95185 0.90088 0.86978 0.70921 0.93802 0.86846 0.89614 0.93196 0.87133 0.93354 0.88733 0.86820 0.92492 0.93507 0.93516 0.94476 0.95845 0.79656 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.16 71.98 0.59 -2.73 16 2 C -0.09 -2.05 3.54 -9.33 -0.03 -2.09 16 3 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.11 2.75 5.62 86.93 0.49 3.23 16 5 N -0.59 -20.37 3.31 -814.72 -2.70 -23.06 16 6 C 0.61 23.83 7.86 86.80 0.68 24.51 16 7 O -0.58 -27.58 17.41 -3.87 -0.07 -27.64 16 8 C 0.12 3.83 7.79 137.13 1.07 4.90 16 9 N -0.49 -11.15 8.46 -193.02 -1.63 -12.78 16 10 C 0.20 2.78 11.71 180.30 2.11 4.89 16 11 N -0.29 -4.93 3.17 -311.59 -0.99 -5.92 16 12 C 0.16 1.36 1.23 3.60 0.00 1.36 16 13 C -0.16 -0.74 8.72 71.98 0.63 -0.11 16 14 C -0.15 -1.79 8.05 71.98 0.58 -1.22 16 15 C -0.15 -0.24 8.28 71.98 0.60 0.35 16 16 N -0.28 -7.99 11.09 -52.43 -0.58 -8.57 16 17 C 0.13 4.92 5.83 86.73 0.51 5.42 16 18 C -0.09 -3.02 2.86 -9.61 -0.03 -3.04 16 19 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 20 C 0.16 6.66 4.53 86.38 0.39 7.05 16 21 N -0.75 -39.56 5.45 -343.45 -1.87 -41.43 16 22 C -0.24 -14.06 9.99 84.03 0.84 -13.22 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 25 N -0.97 -62.34 13.06 21.65 0.28 -62.06 16 26 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 27 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 28 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 29 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 30 H 0.06 1.57 6.77 -2.39 -0.02 1.55 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 0.86 7.91 -2.38 -0.02 0.84 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.56 6.05 -2.39 -0.01 2.54 16 35 H 0.28 0.27 7.53 -2.91 -0.02 0.24 16 36 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 38 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 41 H 0.05 0.85 8.02 -2.39 -0.02 0.84 16 42 H 0.09 -0.27 7.34 -2.39 -0.02 -0.29 16 43 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.05 2.09 7.77 -2.38 -0.02 2.07 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.02 0.98 6.69 -2.39 -0.02 0.96 16 49 H 0.37 21.17 7.52 -92.71 -0.70 20.47 16 50 H 0.25 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -86.97 400.09 3.60 -83.37 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.23 Total: 23.14 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 8.89 Total: 24.97 kcal Atomic # 7 Polarization: -146.33 SS G_CDS: -7.49 Total: -153.82 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -86.97 3.60 -83.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501136328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -86.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds