Wall clock time and date at job start Wed Apr 1 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47018 * 180.02562 * 19 17 16 21 21 C 1.52991 * 109.47007 * 180.02562 * 20 19 17 22 22 N 1.46505 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.34434 * 126.82397 * 125.00038 * 22 21 20 24 24 N 1.30828 * 108.07640 * 179.97438 * 23 22 21 25 25 C 1.33246 * 109.82724 * 359.97438 * 24 23 22 26 26 N 1.30709 * 108.94976 * 359.75279 * 25 24 23 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 39 39 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 40 40 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 41 41 H 1.09006 * 109.46963 * 299.99793 * 20 19 17 42 42 H 1.08994 * 109.47288 * 59.99784 * 20 19 17 43 43 H 1.09005 * 109.47382 * 299.99768 * 21 20 19 44 44 H 1.09002 * 109.47834 * 59.99732 * 21 20 19 45 45 H 1.07995 * 125.96109 * 359.97438 * 23 22 21 46 46 H 1.08008 * 125.52245 * 179.97438 * 25 24 23 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 6 -0.0389 -4.5927 5.8986 21 6 -0.4079 -6.0751 5.8156 22 7 -1.1064 -6.4738 7.0402 23 6 -2.3154 -7.0554 7.1252 24 7 -2.5835 -7.2514 8.3906 25 6 -1.5738 -6.8106 9.1401 26 7 -0.6429 -6.3306 8.3582 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2335 -2.3998 -4.2459 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8756 -2.6711 0.3465 37 1 3.1571 -2.9723 2.4136 38 1 1.6341 -3.8900 2.5391 39 1 0.0410 -4.3411 3.7608 40 1 1.5978 -4.7713 4.5088 41 1 0.6111 -4.4281 6.7580 42 1 -0.9454 -3.9979 6.0094 43 1 -1.0577 -6.2403 4.9561 44 1 0.4989 -6.6698 5.7050 45 1 -2.9540 -7.3153 6.2940 46 1 -1.5301 -6.8476 10.2186 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567633059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:50 Heat of formation + Delta-G solvation = 55.421823 kcal Electronic energy + Delta-G solvation = -28658.164528 eV Core-core repulsion = 24722.239910 eV Total energy + Delta-G solvation = -3935.924618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.35666 -40.38629 -38.22345 -35.96529 -35.43061 -33.11731 -32.54719 -31.52197 -31.11694 -30.59549 -28.42033 -27.57004 -25.36413 -24.10599 -23.32665 -23.04999 -22.32554 -21.68010 -21.17634 -19.54800 -18.54554 -17.73605 -17.37121 -16.93570 -16.51842 -15.91288 -15.76301 -15.21706 -14.94671 -14.77398 -14.45897 -14.38712 -14.09153 -13.87046 -13.64970 -13.33538 -13.16545 -13.13938 -12.78076 -12.56399 -12.21886 -12.21290 -11.99466 -11.88687 -11.63294 -11.42586 -11.26447 -11.07872 -10.90175 -10.64429 -10.38761 -10.34603 -10.31541 -10.14605 -10.12362 -10.04549 -9.90217 -9.70906 -9.59311 -8.95667 -8.66416 -6.99585 -5.81844 -3.09393 1.30324 1.93654 2.50360 2.65318 2.89566 3.39261 3.45725 3.47269 3.95680 3.99153 4.21360 4.40880 4.54487 4.60015 4.67028 4.73061 4.78997 4.89695 4.97384 5.02228 5.06802 5.13589 5.16845 5.34184 5.44478 5.50911 5.57580 5.60621 5.75617 5.76810 5.84753 5.89884 5.92317 5.94072 6.07385 6.09975 6.15260 6.22150 6.25993 6.42448 6.44190 6.51396 6.62173 6.71271 6.87724 7.10759 7.32095 7.67223 7.74651 8.05662 8.37989 9.49214 10.07253 10.41693 11.41180 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.001894 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.939092 B =14779.201816 C =15471.884272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.515 3.485 18 O -0.548 6.548 19 C -0.139 4.139 20 C -0.115 4.115 21 C 0.127 3.873 22 N -0.377 5.377 23 C 0.253 3.747 24 N -0.550 5.550 25 C 0.195 3.805 26 N -0.315 5.315 27 C 0.112 3.888 28 C -0.128 4.128 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.219 0.781 46 H 0.216 0.784 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 -9.062 19.091 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.067 3.933 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.018 4.018 16 N -0.340 5.340 17 C 0.303 3.697 18 O -0.426 6.426 19 C -0.180 4.180 20 C -0.153 4.153 21 C 0.006 3.994 22 N -0.168 5.168 23 C -0.044 4.044 24 N -0.277 5.277 25 C -0.108 4.108 26 N -0.142 5.142 27 C -0.011 4.011 28 C -0.167 4.167 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.235 0.765 46 H 0.232 0.768 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.788 -8.413 19.771 22.252 hybrid contribution 0.133 0.126 -1.467 1.479 sum -5.655 -8.287 18.304 20.873 Atomic orbital electron populations 1.22529 0.99600 1.00760 0.99766 1.20195 0.91726 0.95233 0.86101 0.93623 1.42490 1.78164 1.10755 1.05241 1.19299 1.36164 0.93890 0.87260 0.91229 1.24712 1.02374 0.95993 0.97999 1.69655 1.51398 1.08613 1.28690 0.86146 0.77282 0.78819 0.84130 1.20613 1.21928 1.21947 1.21384 1.00369 0.94510 0.94663 1.21988 1.01224 0.96399 0.97085 1.21896 1.00585 0.94881 0.84424 1.48171 1.56971 1.11160 1.17719 1.20482 0.77333 0.89457 0.82431 1.90701 1.54436 1.65856 1.31581 1.21611 1.02581 0.94080 0.99681 1.21575 1.02325 0.92992 0.98427 1.21925 0.98334 0.97222 0.81963 1.50578 1.14865 1.44903 1.06410 1.26108 0.87109 0.94198 0.97003 1.70542 1.29420 1.26527 1.01241 1.26030 0.87503 0.95967 1.01312 1.78074 1.23712 1.25111 0.87339 1.21636 0.99768 0.80109 0.99548 1.22009 1.01477 0.99368 0.93806 0.93141 0.93398 0.94429 0.78235 0.93634 0.91049 0.91371 0.89511 0.91054 0.89986 0.88318 0.88390 0.89561 0.90493 0.87732 0.88998 0.76490 0.76754 0.91617 0.89372 0.90802 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.79 37.16 0.33 -2.51 16 2 C 0.18 3.24 2.72 -67.93 -0.18 3.05 16 3 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 4 N -0.72 -16.86 5.04 -53.43 -0.27 -17.13 16 5 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 9 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C -0.09 -1.30 2.14 -90.58 -0.19 -1.49 16 14 C -0.13 -1.67 4.81 -26.61 -0.13 -1.80 16 15 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 16 N -0.61 -6.80 2.97 -172.77 -0.51 -7.31 16 17 C 0.51 5.97 7.70 -10.98 -0.08 5.88 16 18 O -0.55 -8.44 15.40 5.55 0.09 -8.35 16 19 C -0.14 -0.99 4.05 -27.88 -0.11 -1.11 16 20 C -0.11 -0.90 4.72 -26.73 -0.13 -1.03 16 21 C 0.13 0.68 6.55 -4.04 -0.03 0.65 16 22 N -0.38 -3.09 3.69 -62.63 -0.23 -3.32 16 23 C 0.25 1.85 12.63 -90.65 -1.14 0.70 16 24 N -0.55 -5.40 11.19 -15.83 -0.18 -5.58 16 25 C 0.19 1.83 13.03 -91.81 -1.20 0.63 16 26 N -0.31 -3.34 12.58 29.29 0.37 -2.97 16 27 C 0.11 1.31 6.43 -3.71 -0.02 1.28 16 28 C -0.13 -1.57 4.96 -26.62 -0.13 -1.71 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 31 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 32 H 0.38 9.28 6.04 -40.82 -0.25 9.03 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 36 H 0.09 1.31 6.46 -51.93 -0.34 0.97 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 39 H 0.10 0.52 7.69 -51.93 -0.40 0.13 16 40 H 0.10 0.52 7.94 -51.93 -0.41 0.11 16 41 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.22 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 0.89 6.51 -51.93 -0.34 0.55 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -35.20 395.58 -10.39 -45.59 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.02 Total: 5.96 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.30 Total: -3.32 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.10 Total: -62.67 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.20 -10.39 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.014 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds