Wall clock time and date at job start Wed Apr 1 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47018 * 180.02562 * 19 17 16 21 21 C 1.52991 * 109.47007 * 180.02562 * 20 19 17 22 22 N 1.46505 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.34434 * 126.82397 * 125.00038 * 22 21 20 24 24 N 1.30828 * 108.07640 * 179.97438 * 23 22 21 25 25 C 1.33246 * 109.82724 * 359.97438 * 24 23 22 26 26 N 1.30709 * 108.94976 * 359.75279 * 25 24 23 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 39 39 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 40 40 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 41 41 H 1.09006 * 109.46963 * 299.99793 * 20 19 17 42 42 H 1.08994 * 109.47288 * 59.99784 * 20 19 17 43 43 H 1.09005 * 109.47382 * 299.99768 * 21 20 19 44 44 H 1.09002 * 109.47834 * 59.99732 * 21 20 19 45 45 H 1.07995 * 125.96109 * 359.97438 * 23 22 21 46 46 H 1.08008 * 125.52245 * 179.97438 * 25 24 23 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 6 -0.0389 -4.5927 5.8986 21 6 -0.4079 -6.0751 5.8156 22 7 -1.1064 -6.4738 7.0402 23 6 -2.3154 -7.0554 7.1252 24 7 -2.5835 -7.2514 8.3906 25 6 -1.5738 -6.8106 9.1401 26 7 -0.6429 -6.3306 8.3582 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2335 -2.3998 -4.2459 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8756 -2.6711 0.3465 37 1 3.1571 -2.9723 2.4136 38 1 1.6341 -3.8900 2.5391 39 1 0.0410 -4.3411 3.7608 40 1 1.5978 -4.7713 4.5088 41 1 0.6111 -4.4281 6.7580 42 1 -0.9454 -3.9979 6.0094 43 1 -1.0577 -6.2403 4.9561 44 1 0.4989 -6.6698 5.7050 45 1 -2.9540 -7.3153 6.2940 46 1 -1.5301 -6.8476 10.2186 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567633059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:48 Heat of formation + Delta-G solvation = 34.751746 kcal Electronic energy + Delta-G solvation = -28659.060849 eV Core-core repulsion = 24722.239910 eV Total energy + Delta-G solvation = -3936.820940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.93948 -41.32343 -39.36624 -36.89941 -36.44994 -34.66563 -33.38904 -32.31267 -32.12689 -31.84856 -29.93169 -28.29972 -26.61555 -25.57032 -24.37843 -23.95936 -22.89074 -22.64100 -21.95360 -20.62438 -19.59440 -19.23657 -18.39911 -17.82022 -17.13379 -16.83419 -16.63206 -16.46682 -15.97956 -15.76955 -15.53562 -15.40448 -15.22430 -15.02021 -14.79075 -14.26201 -14.22268 -14.13590 -13.75839 -13.68479 -13.31259 -13.07262 -12.96608 -12.86139 -12.78458 -12.70411 -12.57380 -12.56877 -12.09665 -11.98971 -11.83100 -11.73633 -11.58493 -11.24024 -11.11452 -10.98287 -10.89339 -10.78487 -10.75378 -10.57347 -9.62803 -8.94342 -7.91426 -5.16999 0.73689 1.46685 1.47717 1.48987 1.57664 1.64340 2.03439 2.06728 2.58200 3.39714 3.42434 3.56456 3.63190 3.80019 3.81691 3.89477 3.96158 4.07894 4.14289 4.17891 4.25959 4.32132 4.38178 4.41233 4.49323 4.54210 4.57547 4.65211 4.68333 4.77449 4.84826 4.89879 4.96714 5.01077 5.02521 5.11486 5.14980 5.22572 5.29839 5.33429 5.38219 5.43801 5.49929 5.56146 5.63797 5.73440 5.97991 6.33004 6.45521 7.15339 7.18465 7.39702 8.17992 8.41748 9.32063 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.001894 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.939092 B =14779.201816 C =15471.884272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.034 0.966 4 N -0.733 5.733 5 C -0.233 4.233 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.295 1.295 12 H -0.295 1.295 13 C -0.081 4.081 14 C -0.123 4.123 15 C 0.111 3.889 16 N -0.607 5.607 17 C 0.508 3.492 18 O -0.594 6.594 19 C -0.131 4.131 20 C -0.104 4.104 21 C 0.127 3.873 22 N -0.382 5.382 23 C 0.259 3.741 24 N -0.584 5.584 25 C 0.187 3.813 26 N -0.356 5.356 27 C 0.113 3.887 28 C -0.117 4.117 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.377 0.623 33 H 0.249 0.751 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.147 0.853 44 H 0.105 0.895 45 H 0.262 0.738 46 H 0.235 0.765 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -10.067 18.816 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.052 0.948 4 N -0.375 5.375 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.100 4.100 14 C -0.162 4.162 15 C -0.011 4.011 16 N -0.339 5.339 17 C 0.298 3.702 18 O -0.475 6.475 19 C -0.171 4.171 20 C -0.143 4.143 21 C 0.006 3.994 22 N -0.173 5.173 23 C -0.037 4.037 24 N -0.312 5.312 25 C -0.116 4.116 26 N -0.184 5.184 27 C -0.010 4.010 28 C -0.155 4.155 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.164 0.836 44 H 0.123 0.877 45 H 0.277 0.723 46 H 0.251 0.749 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.478 -9.389 19.502 22.593 hybrid contribution 0.323 0.519 -1.339 1.472 sum -6.155 -8.870 18.163 21.129 Atomic orbital electron populations 1.22370 0.98200 1.00979 0.99980 1.20417 0.92554 0.94695 0.86081 0.94780 1.42653 1.78339 1.10606 1.05867 1.19613 1.34460 0.93997 0.88498 0.91313 1.25403 1.03402 0.96885 1.00938 1.69781 1.53020 1.09832 1.29079 0.85208 0.76694 0.78155 0.80539 1.19547 1.22266 1.22277 1.21239 0.99684 0.95549 0.93565 1.21889 1.01226 0.95301 0.97755 1.21947 1.01068 0.95827 0.82290 1.48257 1.56680 1.10929 1.18065 1.21300 0.76279 0.91107 0.81521 1.90687 1.56165 1.67310 1.33326 1.21669 1.04269 0.90915 1.00211 1.21398 1.00594 0.94725 0.97628 1.22182 0.99939 0.95159 0.82117 1.50749 1.15337 1.44951 1.06241 1.26955 0.86883 0.92491 0.97401 1.70543 1.30142 1.27887 1.02589 1.26498 0.87275 0.95415 1.02377 1.77998 1.25068 1.26460 0.88870 1.21554 1.00106 0.80800 0.98544 1.21895 1.01176 0.99579 0.92888 0.95366 0.93156 0.91706 0.78938 0.94160 0.92066 0.91242 0.91608 0.90571 0.86369 0.85246 0.85643 0.92990 0.92765 0.83566 0.87656 0.72254 0.74917 0.90894 0.90381 0.90195 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 8.79 71.98 0.63 -4.48 16 2 C 0.17 6.14 2.72 44.99 0.12 6.26 16 3 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 4 N -0.73 -34.18 5.04 -322.94 -1.63 -35.81 16 5 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 9 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 13 C -0.08 -2.24 2.14 -10.77 -0.02 -2.27 16 14 C -0.12 -2.97 4.81 30.67 0.15 -2.82 16 15 C 0.11 1.88 6.34 86.37 0.55 2.43 16 16 N -0.61 -12.27 2.97 -818.90 -2.43 -14.70 16 17 C 0.51 10.84 7.70 87.66 0.67 11.52 16 18 O -0.59 -18.22 15.40 -3.04 -0.05 -18.26 16 19 C -0.13 -1.43 4.05 29.85 0.12 -1.31 16 20 C -0.10 -1.47 4.72 30.59 0.14 -1.33 16 21 C 0.13 0.95 6.55 86.38 0.57 1.52 16 22 N -0.38 -5.59 3.69 -352.06 -1.30 -6.89 16 23 C 0.26 3.21 12.63 180.36 2.28 5.48 16 24 N -0.58 -10.90 11.19 -204.00 -2.28 -13.18 16 25 C 0.19 3.48 13.03 180.76 2.36 5.84 16 26 N -0.36 -7.49 12.58 -61.24 -0.77 -8.26 16 27 C 0.11 2.49 6.43 86.36 0.56 3.05 16 28 C -0.12 -2.70 4.96 30.67 0.15 -2.55 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.62 6.46 -2.39 -0.02 1.60 16 31 H 0.06 1.76 6.46 -2.39 -0.02 1.75 16 32 H 0.38 18.38 6.04 -92.71 -0.56 17.82 16 33 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.66 6.51 -2.38 -0.02 1.64 16 36 H 0.07 1.91 6.46 -2.39 -0.02 1.89 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 1.19 5.93 -2.39 -0.01 1.17 16 39 H 0.13 0.70 7.69 -2.39 -0.02 0.68 16 40 H 0.13 0.76 7.94 -2.39 -0.02 0.74 16 41 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 42 H 0.05 1.00 8.10 -2.39 -0.02 0.99 16 43 H 0.15 -0.11 8.09 -2.38 -0.02 -0.13 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.26 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 47 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.08 1.93 7.00 -2.39 -0.02 1.91 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 1.60 6.51 -2.38 -0.02 1.58 16 Total: -1.00 -79.43 395.58 3.80 -75.62 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.38 Total: 24.41 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 9.57 Total: 6.10 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -8.13 Total: -134.96 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -79.43 3.80 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.376 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds