Wall clock time and date at job start Tue Mar 31 2020 23:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.52993 * 109.46792 * 120.00207 * 2 1 3 5 5 C 1.53001 * 109.47046 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46956 * 299.99615 * 5 4 2 7 7 C 1.52998 * 109.46995 * 59.99791 * 6 5 4 8 8 C 1.52997 * 109.46883 * 239.99936 * 2 1 3 9 9 C 1.53003 * 109.47560 * 60.00105 * 8 2 1 10 10 N 1.46503 * 109.46846 * 54.96970 * 9 8 2 11 11 C 1.36936 * 120.00043 * 185.06544 * 10 9 8 12 12 H 1.08000 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00193 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47129 * 89.99913 * 15 13 11 17 17 H 1.48495 * 109.47145 * 209.99886 * 15 13 11 18 18 H 1.48497 * 109.46839 * 329.99762 * 15 13 11 19 19 N 1.46501 * 109.47099 * 299.99899 * 8 2 1 20 20 C 1.34775 * 119.99993 * 184.19208 * 19 8 2 21 21 O 1.21288 * 120.00074 * 354.57203 * 20 19 8 22 22 C 1.50706 * 120.00138 * 174.56311 * 20 19 8 23 23 C 1.52994 * 109.47104 * 180.02562 * 22 20 19 24 24 C 1.50705 * 109.47090 * 180.02562 * 23 22 20 25 25 N 1.33238 * 125.52146 * 269.69452 * 24 23 22 26 26 C 1.30832 * 109.82572 * 179.85545 * 25 24 23 27 27 N 1.34426 * 108.07779 * 0.40199 * 26 25 24 28 28 H 0.96998 * 126.82486 * 179.71994 * 27 26 25 29 29 N 1.30707 * 125.52548 * 89.99916 * 24 23 22 30 30 H 1.09001 * 109.47248 * 300.00286 * 1 2 3 31 31 H 1.09004 * 109.47035 * 59.99962 * 1 2 3 32 32 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47697 * 59.99468 * 4 2 1 34 34 H 1.09001 * 109.47277 * 299.99490 * 4 2 1 35 35 H 1.08998 * 109.47491 * 59.99116 * 5 4 2 36 36 H 1.09004 * 109.47289 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.47395 * 180.02562 * 6 5 4 38 38 H 1.08998 * 109.46614 * 300.00039 * 6 5 4 39 39 H 1.08998 * 109.46969 * 60.00150 * 7 6 5 40 40 H 1.09001 * 109.46888 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.47230 * 174.96629 * 9 8 2 42 42 H 1.08997 * 109.46749 * 294.97149 * 9 8 2 43 43 H 0.97001 * 119.99808 * 5.06049 * 10 9 8 44 44 H 0.96993 * 120.00117 * 179.97438 * 14 13 11 45 45 H 0.97002 * 120.00220 * 4.19779 * 19 8 2 46 46 H 1.08997 * 109.47281 * 300.00672 * 22 20 19 47 47 H 1.08998 * 109.46732 * 60.00198 * 22 20 19 48 48 H 1.08997 * 109.47424 * 300.00369 * 23 22 20 49 49 H 1.08998 * 109.47340 * 60.00354 * 23 22 20 50 50 H 1.08009 * 125.96187 * 180.12731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7205 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4986 10 7 1.9171 1.4117 -2.4396 11 6 1.4805 2.2821 -3.4023 12 1 0.8513 1.9277 -4.2054 13 6 1.8468 3.6198 -3.3461 14 7 2.6133 4.0518 -2.3672 15 14 1.2507 4.8074 -4.6591 16 1 -0.0439 5.4010 -4.2388 17 1 2.2539 5.8868 -4.8425 18 1 1.0684 4.0783 -5.9399 19 7 1.5516 -2.1025 -1.2492 20 6 1.9454 -2.9565 -2.2146 21 8 2.6239 -2.5575 -3.1374 22 6 1.5427 -4.4072 -2.1475 23 6 2.1161 -5.1520 -3.3547 24 6 1.7129 -6.6025 -3.2880 25 7 2.4070 -7.5724 -2.6939 26 6 1.7744 -8.7108 -2.8182 27 7 0.6467 -8.4875 -3.5149 28 1 -0.0215 -9.1444 -3.7656 29 7 0.6285 -7.1141 -3.8083 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -1.7489 1.2493 34 1 1.6767 -0.2074 2.1392 35 1 3.9330 0.3070 1.2497 36 1 3.9333 -1.2342 2.1398 37 1 5.1704 -1.4418 0.0007 38 1 3.7175 -2.4695 0.0002 39 1 3.9335 0.3073 -1.2487 40 1 3.9338 -1.2344 -2.1389 41 1 1.9651 -0.4593 -3.3862 42 1 0.4438 -0.0774 -2.5447 43 1 2.4825 1.7298 -1.7184 44 1 2.8695 4.9865 -2.3282 45 1 0.9448 -2.4024 -0.5543 46 1 1.9305 -4.8499 -1.2301 47 1 0.4554 -4.4832 -2.1562 48 1 1.7286 -4.7094 -4.2723 49 1 3.2034 -5.0760 -3.3457 50 1 2.1033 -9.6646 -2.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568035142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:47 Heat of formation + Delta-G solvation = 45.002554 kcal Electronic energy + Delta-G solvation = -30160.379942 eV Core-core repulsion = 26224.003511 eV Total energy + Delta-G solvation = -3936.376431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40804 -40.53941 -38.09967 -34.54411 -34.32217 -33.45409 -32.29231 -32.17947 -31.39139 -30.65106 -28.99129 -26.47519 -25.33580 -24.82833 -23.08838 -22.71509 -21.67787 -20.67421 -20.48076 -20.05557 -18.67814 -18.41556 -17.18761 -17.07634 -15.89064 -15.72902 -15.26725 -15.09032 -14.72428 -14.34406 -14.26366 -13.83985 -13.81748 -13.61649 -13.28601 -13.03015 -12.72297 -12.55187 -12.48592 -12.41990 -12.28031 -11.65835 -11.59430 -11.39416 -11.34071 -11.20618 -11.02119 -10.82353 -10.72832 -10.49678 -10.42318 -10.34152 -10.30461 -10.03832 -10.01590 -9.88173 -9.76082 -9.58447 -9.11074 -8.70853 -8.52686 -6.77227 -5.66874 -2.93250 1.27635 2.32856 2.55894 2.92456 3.40567 3.50214 3.55785 3.57806 3.88093 4.38492 4.62376 4.69984 4.82243 4.95115 5.02426 5.05095 5.08899 5.15834 5.40625 5.46122 5.49417 5.67674 5.72391 5.75881 5.79117 5.84710 5.85758 5.87477 5.91643 5.93379 6.09073 6.15018 6.17259 6.20025 6.27423 6.41072 6.43638 6.54434 6.57086 6.65727 6.66832 6.69017 6.87227 6.95024 7.03828 7.22010 7.76564 7.81034 7.86111 8.51568 8.56626 9.63858 10.22398 10.57452 11.56366 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002905 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.040426 B = 9637.361856 C =10876.226880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.128 4.128 8 C 0.182 3.818 9 C 0.146 3.854 10 N -0.726 5.726 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.016 4.016 14 N -0.936 5.936 15 Si 0.904 3.096 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.716 5.716 20 C 0.513 3.487 21 O -0.525 6.525 22 C -0.133 4.133 23 C -0.012 4.012 24 C 0.234 3.766 25 N -0.540 5.540 26 C 0.259 3.741 27 N -0.488 5.488 28 H 0.441 0.559 29 N -0.312 5.312 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.253 0.747 45 H 0.394 0.606 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -25.894 7.341 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.166 4.166 8 C 0.097 3.903 9 C 0.018 3.982 10 N -0.372 5.372 11 C -0.360 4.360 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.585 5.585 15 Si 0.736 3.264 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.209 1.209 19 N -0.368 5.368 20 C 0.299 3.701 21 O -0.401 6.401 22 C -0.174 4.174 23 C -0.052 4.052 24 C -0.048 4.048 25 N -0.268 5.268 26 C -0.040 4.040 27 N -0.206 5.206 28 H 0.286 0.714 29 N -0.141 5.141 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.218 0.782 44 H 0.063 0.937 45 H 0.229 0.771 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.863 -25.039 6.309 25.980 hybrid contribution -0.917 -0.171 -0.143 0.943 sum -3.780 -25.210 6.166 26.227 Atomic orbital electron populations 1.21827 0.95170 1.00462 1.02725 1.21348 0.95876 1.01023 0.92642 0.88463 1.21600 0.95712 0.99864 0.97782 1.21550 0.95621 1.01116 0.97460 1.21475 0.99673 0.99022 0.94887 1.21920 0.94145 1.02175 0.98354 1.20508 0.93860 0.79776 0.96164 1.21050 0.96531 0.86051 0.94616 1.42316 1.61013 1.02437 1.31388 1.19212 1.24294 0.89268 1.03273 0.91400 1.24673 1.00776 0.97043 0.98622 1.69645 1.40832 1.14967 1.33057 0.86216 0.77706 0.81092 0.81393 1.21936 1.21898 1.20860 1.46123 1.49581 1.11779 1.29329 1.20342 0.80251 0.87386 0.82147 1.90721 1.38186 1.78343 1.32899 1.21569 1.02779 0.92980 1.00090 1.19678 1.03045 0.82996 0.99460 1.24400 0.88881 0.97681 0.93878 1.70467 1.32270 0.98228 1.25844 1.26138 0.84840 0.99710 0.93361 1.48169 1.20765 1.08309 1.43355 0.71381 1.78081 1.22749 0.88122 1.25191 0.93072 0.90981 0.93937 0.92729 0.92186 0.91664 0.92765 0.92603 0.92740 0.90358 0.89816 0.94270 0.96172 0.78229 0.93689 0.77105 0.88713 0.89030 0.88455 0.88037 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.67 37.16 0.32 -1.76 16 2 C -0.09 -1.38 1.78 -90.62 -0.16 -1.54 16 3 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 4 C -0.11 -1.38 5.03 -26.73 -0.13 -1.51 16 5 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 6 C -0.11 -1.56 5.77 -26.73 -0.15 -1.72 16 7 C -0.13 -2.20 4.33 -26.71 -0.12 -2.32 16 8 C 0.18 3.00 0.11 -131.79 -0.01 2.99 16 9 C 0.15 3.11 4.56 -4.04 -0.02 3.09 16 10 N -0.73 -18.48 5.00 -59.91 -0.30 -18.78 16 11 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 13 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 14 N -0.94 -28.44 13.06 55.49 0.72 -27.72 16 15 Si 0.90 23.02 29.55 -169.99 -5.02 17.99 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 N -0.72 -9.49 3.74 -47.58 -0.18 -9.66 16 20 C 0.51 7.17 7.17 -10.98 -0.08 7.09 16 21 O -0.53 -9.48 12.28 5.55 0.07 -9.41 16 22 C -0.13 -1.39 5.68 -27.88 -0.16 -1.55 16 23 C -0.01 -0.13 5.13 -27.88 -0.14 -0.28 16 24 C 0.23 2.67 7.39 -156.86 -1.16 1.51 16 25 N -0.54 -5.66 11.19 -11.97 -0.13 -5.80 16 26 C 0.26 1.63 13.13 -90.66 -1.19 0.44 16 27 N -0.49 -3.23 7.45 29.53 0.22 -3.01 16 28 H 0.44 1.22 8.96 -182.33 -1.63 -0.42 16 29 N -0.31 -3.44 12.80 32.42 0.41 -3.03 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 32 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 33 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 39 H 0.08 1.54 7.08 -51.93 -0.37 1.18 16 40 H 0.08 1.62 6.06 -51.93 -0.31 1.30 16 41 H 0.04 0.94 6.44 -51.93 -0.33 0.61 16 42 H 0.02 0.44 6.71 -51.93 -0.35 0.09 16 43 H 0.38 10.07 5.38 -40.82 -0.22 9.85 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.39 4.19 6.18 -40.82 -0.25 3.93 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 49 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 50 H 0.22 0.22 8.06 -52.48 -0.42 -0.20 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -35.93 385.24 -10.84 -46.78 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -9.03 Total: 11.33 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.41 Total: -4.50 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: 0.75 Total: -68.00 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.93 -10.84 -46.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.778 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds