Wall clock time and date at job start Tue Mar 31 2020 23:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.52993 * 109.46792 * 120.00207 * 2 1 3 5 5 C 1.53001 * 109.47046 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46956 * 299.99615 * 5 4 2 7 7 C 1.52998 * 109.46995 * 59.99791 * 6 5 4 8 8 C 1.52997 * 109.46883 * 239.99936 * 2 1 3 9 9 C 1.53003 * 109.47560 * 60.00105 * 8 2 1 10 10 N 1.46503 * 109.46846 * 54.96970 * 9 8 2 11 11 C 1.36936 * 120.00043 * 185.06544 * 10 9 8 12 12 H 1.08000 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00049 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00193 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47129 * 89.99913 * 15 13 11 17 17 H 1.48495 * 109.47145 * 209.99886 * 15 13 11 18 18 H 1.48497 * 109.46839 * 329.99762 * 15 13 11 19 19 N 1.46501 * 109.47099 * 299.99899 * 8 2 1 20 20 C 1.34775 * 119.99993 * 184.19208 * 19 8 2 21 21 O 1.21288 * 120.00074 * 354.57203 * 20 19 8 22 22 C 1.50706 * 120.00138 * 174.56311 * 20 19 8 23 23 C 1.52994 * 109.47104 * 180.02562 * 22 20 19 24 24 C 1.50705 * 109.47090 * 180.02562 * 23 22 20 25 25 N 1.33238 * 125.52146 * 269.69452 * 24 23 22 26 26 C 1.30832 * 109.82572 * 179.85545 * 25 24 23 27 27 N 1.34426 * 108.07779 * 0.40199 * 26 25 24 28 28 H 0.96998 * 126.82486 * 179.71994 * 27 26 25 29 29 N 1.30707 * 125.52548 * 89.99916 * 24 23 22 30 30 H 1.09001 * 109.47248 * 300.00286 * 1 2 3 31 31 H 1.09004 * 109.47035 * 59.99962 * 1 2 3 32 32 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47697 * 59.99468 * 4 2 1 34 34 H 1.09001 * 109.47277 * 299.99490 * 4 2 1 35 35 H 1.08998 * 109.47491 * 59.99116 * 5 4 2 36 36 H 1.09004 * 109.47289 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.47395 * 180.02562 * 6 5 4 38 38 H 1.08998 * 109.46614 * 300.00039 * 6 5 4 39 39 H 1.08998 * 109.46969 * 60.00150 * 7 6 5 40 40 H 1.09001 * 109.46888 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.47230 * 174.96629 * 9 8 2 42 42 H 1.08997 * 109.46749 * 294.97149 * 9 8 2 43 43 H 0.97001 * 119.99808 * 5.06049 * 10 9 8 44 44 H 0.96993 * 120.00117 * 179.97438 * 14 13 11 45 45 H 0.97002 * 120.00220 * 4.19779 * 19 8 2 46 46 H 1.08997 * 109.47281 * 300.00672 * 22 20 19 47 47 H 1.08998 * 109.46732 * 60.00198 * 22 20 19 48 48 H 1.08997 * 109.47424 * 300.00369 * 23 22 20 49 49 H 1.08998 * 109.47340 * 60.00354 * 23 22 20 50 50 H 1.08009 * 125.96187 * 180.12731 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7205 -1.2489 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4986 10 7 1.9171 1.4117 -2.4396 11 6 1.4805 2.2821 -3.4023 12 1 0.8513 1.9277 -4.2054 13 6 1.8468 3.6198 -3.3461 14 7 2.6133 4.0518 -2.3672 15 14 1.2507 4.8074 -4.6591 16 1 -0.0439 5.4010 -4.2388 17 1 2.2539 5.8868 -4.8425 18 1 1.0684 4.0783 -5.9399 19 7 1.5516 -2.1025 -1.2492 20 6 1.9454 -2.9565 -2.2146 21 8 2.6239 -2.5575 -3.1374 22 6 1.5427 -4.4072 -2.1475 23 6 2.1161 -5.1520 -3.3547 24 6 1.7129 -6.6025 -3.2880 25 7 2.4070 -7.5724 -2.6939 26 6 1.7744 -8.7108 -2.8182 27 7 0.6467 -8.4875 -3.5149 28 1 -0.0215 -9.1444 -3.7656 29 7 0.6285 -7.1141 -3.8083 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6766 -1.7489 1.2493 34 1 1.6767 -0.2074 2.1392 35 1 3.9330 0.3070 1.2497 36 1 3.9333 -1.2342 2.1398 37 1 5.1704 -1.4418 0.0007 38 1 3.7175 -2.4695 0.0002 39 1 3.9335 0.3073 -1.2487 40 1 3.9338 -1.2344 -2.1389 41 1 1.9651 -0.4593 -3.3862 42 1 0.4438 -0.0774 -2.5447 43 1 2.4825 1.7298 -1.7184 44 1 2.8695 4.9865 -2.3282 45 1 0.9448 -2.4024 -0.5543 46 1 1.9305 -4.8499 -1.2301 47 1 0.4554 -4.4832 -2.1562 48 1 1.7286 -4.7094 -4.2723 49 1 3.2034 -5.0760 -3.3457 50 1 2.1033 -9.6646 -2.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568035142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:41 Heat of formation + Delta-G solvation = 20.761768 kcal Electronic energy + Delta-G solvation = -30161.431102 eV Core-core repulsion = 26224.003511 eV Total energy + Delta-G solvation = -3937.427591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.04411 -41.82104 -39.32976 -36.32612 -35.22801 -34.79592 -33.50373 -33.20180 -32.87844 -31.62999 -30.45808 -27.83153 -26.69404 -26.10713 -24.65746 -23.62205 -22.97571 -21.74965 -21.65537 -20.96015 -19.78713 -19.20868 -19.20235 -18.26592 -16.93592 -16.54858 -16.49265 -16.23735 -16.07619 -15.91644 -15.39515 -15.22059 -15.13564 -15.01182 -14.74017 -14.34597 -14.15901 -13.79985 -13.64087 -13.22614 -13.18157 -13.06941 -12.98390 -12.90461 -12.77291 -12.68406 -12.49947 -12.28016 -12.13879 -12.09935 -11.86423 -11.73041 -11.36748 -11.12615 -11.10340 -11.02644 -11.02163 -10.85258 -10.69063 -10.33132 -9.85489 -8.93778 -7.93778 -5.20772 0.68016 1.44604 1.46737 1.55285 1.78290 1.82223 1.89509 2.30397 2.57709 3.23679 3.38709 3.64907 3.72390 3.84112 3.85006 3.88796 4.10818 4.16557 4.21983 4.24700 4.32365 4.37641 4.50696 4.54610 4.59934 4.65409 4.67441 4.77002 4.92958 4.95944 4.97985 5.02240 5.03579 5.13263 5.19547 5.24104 5.28348 5.29352 5.35646 5.39348 5.41478 5.46656 5.47966 5.56422 5.59706 5.79714 6.28692 6.30100 6.74482 7.14144 7.35119 7.44490 8.10660 8.37006 9.29579 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002905 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.040426 B = 9637.361856 C =10876.226880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.055 0.945 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.123 4.123 8 C 0.196 3.804 9 C 0.150 3.850 10 N -0.731 5.731 11 C -0.242 4.242 12 H 0.065 0.935 13 C -0.071 4.071 14 N -0.966 5.966 15 Si 0.970 3.030 16 H -0.284 1.284 17 H -0.293 1.293 18 H -0.276 1.276 19 N -0.702 5.702 20 C 0.511 3.489 21 O -0.570 6.570 22 C -0.114 4.114 23 C -0.008 4.008 24 C 0.224 3.776 25 N -0.577 5.577 26 C 0.277 3.723 27 N -0.477 5.477 28 H 0.458 0.542 29 N -0.346 5.346 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.009 0.991 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.413 0.587 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -29.017 9.331 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.161 4.161 8 C 0.110 3.890 9 C 0.023 3.977 10 N -0.375 5.375 11 C -0.374 4.374 12 H 0.083 0.917 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.799 3.201 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.202 1.202 19 N -0.355 5.355 20 C 0.299 3.701 21 O -0.449 6.449 22 C -0.155 4.155 23 C -0.049 4.049 24 C -0.059 4.059 25 N -0.306 5.306 26 C -0.021 4.021 27 N -0.196 5.196 28 H 0.306 0.694 29 N -0.177 5.177 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.251 0.749 46 H 0.137 0.863 47 H 0.128 0.872 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -4.189 -28.230 8.312 29.725 hybrid contribution -0.519 0.683 -0.842 1.202 sum -4.708 -27.547 7.470 28.927 Atomic orbital electron populations 1.21780 0.94199 1.02221 1.01535 1.21241 0.96613 0.99017 0.93603 0.92615 1.21579 0.95227 1.01151 0.96188 1.21550 0.96028 1.00178 0.97801 1.21424 0.99897 0.99429 0.93460 1.21790 0.94781 1.00112 0.99458 1.20089 0.93279 0.81215 0.94452 1.21057 0.96038 0.84347 0.96292 1.42408 1.60701 1.03837 1.30543 1.19531 1.23985 0.90166 1.03679 0.91746 1.25466 1.01372 0.98627 1.00910 1.69800 1.42068 1.15065 1.34724 0.85186 0.77221 0.78664 0.78982 1.21059 1.21944 1.20155 1.45895 1.49682 1.10078 1.29884 1.21028 0.79137 0.88785 0.81168 1.90723 1.40172 1.79332 1.34697 1.21470 1.03737 0.89686 1.00647 1.19509 1.02193 0.83993 0.99175 1.24189 0.89393 0.97586 0.94722 1.70435 1.33545 0.99344 1.27310 1.27088 0.83528 1.00274 0.91221 1.48097 1.21464 1.07163 1.42883 0.69350 1.77975 1.23167 0.90448 1.26084 0.91685 0.94750 0.90639 0.89754 0.90593 0.93653 0.89702 0.92336 0.90950 0.93992 0.92435 0.97299 0.96423 0.78967 0.93983 0.74867 0.86281 0.87243 0.90297 0.89317 0.71093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.67 71.98 0.62 -3.26 16 2 C -0.09 -2.60 1.78 -10.79 -0.02 -2.62 16 3 H 0.06 2.19 6.67 -2.39 -0.02 2.17 16 4 C -0.10 -2.27 5.03 30.59 0.15 -2.11 16 5 C -0.12 -2.77 5.92 30.60 0.18 -2.58 16 6 C -0.10 -2.80 5.77 30.60 0.18 -2.62 16 7 C -0.12 -4.45 4.33 30.61 0.13 -4.32 16 8 C 0.20 6.62 0.11 3.62 0.00 6.62 16 9 C 0.15 6.79 4.56 86.38 0.39 7.19 16 10 N -0.73 -39.47 5.00 -343.44 -1.72 -41.19 16 11 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 12 H 0.06 3.80 7.83 -2.91 -0.02 3.78 16 13 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 14 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 15 Si 0.97 48.43 29.55 68.60 2.03 50.46 16 16 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 N -0.70 -17.76 3.74 -422.83 -1.58 -19.34 16 20 C 0.51 14.13 7.17 87.66 0.63 14.76 16 21 O -0.57 -21.59 12.28 -3.05 -0.04 -21.63 16 22 C -0.11 -2.21 5.68 29.85 0.17 -2.04 16 23 C -0.01 -0.19 5.13 29.85 0.15 -0.04 16 24 C 0.22 4.87 7.39 138.63 1.03 5.90 16 25 N -0.58 -10.94 11.19 -191.80 -2.15 -13.09 16 26 C 0.28 2.57 13.13 180.36 2.37 4.93 16 27 N -0.48 -5.09 7.45 -60.49 -0.45 -5.54 16 28 H 0.46 1.24 8.96 -213.10 -1.91 -0.67 16 29 N -0.35 -7.20 12.80 -51.33 -0.66 -7.86 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.20 6.55 -2.39 -0.02 1.19 16 32 H 0.07 1.56 6.78 -2.39 -0.02 1.54 16 33 H 0.08 1.38 6.95 -2.39 -0.02 1.36 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.69 7.54 -2.39 -0.02 1.68 16 39 H 0.04 1.79 7.08 -2.39 -0.02 1.78 16 40 H 0.06 2.37 6.06 -2.39 -0.01 2.36 16 41 H 0.01 0.47 6.44 -2.39 -0.02 0.45 16 42 H 0.02 0.81 6.71 -2.39 -0.02 0.79 16 43 H 0.38 21.19 5.38 -92.71 -0.50 20.69 16 44 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.41 7.38 6.18 -92.71 -0.57 6.81 16 46 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 49 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 50 H 0.27 -0.81 8.06 -2.91 -0.02 -0.84 16 Total: -1.00 -84.04 385.24 1.02 -83.02 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -2.00 Total: 33.18 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.29 Total: 2.44 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -6.27 Total: -147.47 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -84.04 1.02 -83.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568035142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.785 kcal (2) G-P(sol) polarization free energy of solvation -84.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds