Wall clock time and date at job start Tue Mar 31 2020 23:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.47176 * 2 1
4 4 C 1.52993 * 109.46792 * 120.00207 * 2 1 3
5 5 C 1.53001 * 109.47046 * 180.02562 * 4 2 1
6 6 C 1.53007 * 109.46956 * 299.99615 * 5 4 2
7 7 C 1.52998 * 109.46995 * 59.99791 * 6 5 4
8 8 C 1.52997 * 109.46883 * 239.99936 * 2 1 3
9 9 C 1.53003 * 109.47560 * 60.00105 * 8 2 1
10 10 N 1.46503 * 109.46846 * 54.96970 * 9 8 2
11 11 C 1.36936 * 120.00043 * 185.06544 * 10 9 8
12 12 H 1.08000 * 119.99590 * 359.97438 * 11 10 9
13 13 C 1.38810 * 120.00049 * 179.97438 * 11 10 9
14 14 N 1.31620 * 120.00193 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 119.99953 * 180.02562 * 13 11 10
16 16 H 1.48497 * 109.47129 * 89.99913 * 15 13 11
17 17 H 1.48495 * 109.47145 * 209.99886 * 15 13 11
18 18 H 1.48497 * 109.46839 * 329.99762 * 15 13 11
19 19 N 1.46501 * 109.47099 * 299.99899 * 8 2 1
20 20 C 1.34775 * 119.99993 * 184.19208 * 19 8 2
21 21 O 1.21288 * 120.00074 * 354.57203 * 20 19 8
22 22 C 1.50706 * 120.00138 * 174.56311 * 20 19 8
23 23 C 1.52994 * 109.47104 * 180.02562 * 22 20 19
24 24 C 1.50705 * 109.47090 * 180.02562 * 23 22 20
25 25 N 1.33238 * 125.52146 * 269.69452 * 24 23 22
26 26 C 1.30832 * 109.82572 * 179.85545 * 25 24 23
27 27 N 1.34426 * 108.07779 * 0.40199 * 26 25 24
28 28 H 0.96998 * 126.82486 * 179.71994 * 27 26 25
29 29 N 1.30707 * 125.52548 * 89.99916 * 24 23 22
30 30 H 1.09001 * 109.47248 * 300.00286 * 1 2 3
31 31 H 1.09004 * 109.47035 * 59.99962 * 1 2 3
32 32 H 1.08998 * 109.47176 * 180.02562 * 1 2 3
33 33 H 1.08998 * 109.47697 * 59.99468 * 4 2 1
34 34 H 1.09001 * 109.47277 * 299.99490 * 4 2 1
35 35 H 1.08998 * 109.47491 * 59.99116 * 5 4 2
36 36 H 1.09004 * 109.47289 * 179.97438 * 5 4 2
37 37 H 1.08994 * 109.47395 * 180.02562 * 6 5 4
38 38 H 1.08998 * 109.46614 * 300.00039 * 6 5 4
39 39 H 1.08998 * 109.46969 * 60.00150 * 7 6 5
40 40 H 1.09001 * 109.46888 * 180.02562 * 7 6 5
41 41 H 1.09001 * 109.47230 * 174.96629 * 9 8 2
42 42 H 1.08997 * 109.46749 * 294.97149 * 9 8 2
43 43 H 0.97001 * 119.99808 * 5.06049 * 10 9 8
44 44 H 0.96993 * 120.00117 * 179.97438 * 14 13 11
45 45 H 0.97002 * 120.00220 * 4.19779 * 19 8 2
46 46 H 1.08997 * 109.47281 * 300.00672 * 22 20 19
47 47 H 1.08998 * 109.46732 * 60.00198 * 22 20 19
48 48 H 1.08997 * 109.47424 * 300.00369 * 23 22 20
49 49 H 1.08998 * 109.47340 * 60.00354 * 23 22 20
50 50 H 1.08009 * 125.96187 * 180.12731 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5700 -0.7208 1.2496
6 6 4.0805 -1.4417 0.0003
7 6 3.5705 -0.7205 -1.2489
8 6 2.0400 -0.7213 -1.2492
9 6 1.5300 -0.0001 -2.4986
10 7 1.9171 1.4117 -2.4396
11 6 1.4805 2.2821 -3.4023
12 1 0.8513 1.9277 -4.2054
13 6 1.8468 3.6198 -3.3461
14 7 2.6133 4.0518 -2.3672
15 14 1.2507 4.8074 -4.6591
16 1 -0.0439 5.4010 -4.2388
17 1 2.2539 5.8868 -4.8425
18 1 1.0684 4.0783 -5.9399
19 7 1.5516 -2.1025 -1.2492
20 6 1.9454 -2.9565 -2.2146
21 8 2.6239 -2.5575 -3.1374
22 6 1.5427 -4.4072 -2.1475
23 6 2.1161 -5.1520 -3.3547
24 6 1.7129 -6.6025 -3.2880
25 7 2.4070 -7.5724 -2.6939
26 6 1.7744 -8.7108 -2.8182
27 7 0.6467 -8.4875 -3.5149
28 1 -0.0215 -9.1444 -3.7656
29 7 0.6285 -7.1141 -3.8083
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 1.6766 -1.7489 1.2493
34 1 1.6767 -0.2074 2.1392
35 1 3.9330 0.3070 1.2497
36 1 3.9333 -1.2342 2.1398
37 1 5.1704 -1.4418 0.0007
38 1 3.7175 -2.4695 0.0002
39 1 3.9335 0.3073 -1.2487
40 1 3.9338 -1.2344 -2.1389
41 1 1.9651 -0.4593 -3.3862
42 1 0.4438 -0.0774 -2.5447
43 1 2.4825 1.7298 -1.7184
44 1 2.8695 4.9865 -2.3282
45 1 0.9448 -2.4024 -0.5543
46 1 1.9305 -4.8499 -1.2301
47 1 0.4554 -4.4832 -2.1562
48 1 1.7286 -4.7094 -4.2723
49 1 3.2034 -5.0760 -3.3457
50 1 2.1033 -9.6646 -2.4325
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568035142.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:29:41
Heat of formation + Delta-G solvation = 20.761768 kcal
Electronic energy + Delta-G solvation = -30161.431102 eV
Core-core repulsion = 26224.003511 eV
Total energy + Delta-G solvation = -3937.427591 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-43.04411 -41.82104 -39.32976 -36.32612 -35.22801 -34.79592 -33.50373 -33.20180
-32.87844 -31.62999 -30.45808 -27.83153 -26.69404 -26.10713 -24.65746 -23.62205
-22.97571 -21.74965 -21.65537 -20.96015 -19.78713 -19.20868 -19.20235 -18.26592
-16.93592 -16.54858 -16.49265 -16.23735 -16.07619 -15.91644 -15.39515 -15.22059
-15.13564 -15.01182 -14.74017 -14.34597 -14.15901 -13.79985 -13.64087 -13.22614
-13.18157 -13.06941 -12.98390 -12.90461 -12.77291 -12.68406 -12.49947 -12.28016
-12.13879 -12.09935 -11.86423 -11.73041 -11.36748 -11.12615 -11.10340 -11.02644
-11.02163 -10.85258 -10.69063 -10.33132 -9.85489 -8.93778 -7.93778 -5.20772
0.68016 1.44604 1.46737 1.55285 1.78290 1.82223 1.89509 2.30397
2.57709 3.23679 3.38709 3.64907 3.72390 3.84112 3.85006 3.88796
4.10818 4.16557 4.21983 4.24700 4.32365 4.37641 4.50696 4.54610
4.59934 4.65409 4.67441 4.77002 4.92958 4.95944 4.97985 5.02240
5.03579 5.13263 5.19547 5.24104 5.28348 5.29352 5.35646 5.39348
5.41478 5.46656 5.47966 5.56422 5.59706 5.79714 6.28692 6.30100
6.74482 7.14144 7.35119 7.44490 8.10660 8.37006 9.29579
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.013349 B = 0.002905 C = 0.002574
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2097.040426 B = 9637.361856 C =10876.226880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.086 4.086
3 H 0.055 0.945
4 C -0.104 4.104
5 C -0.118 4.118
6 C -0.105 4.105
7 C -0.123 4.123
8 C 0.196 3.804
9 C 0.150 3.850
10 N -0.731 5.731
11 C -0.242 4.242
12 H 0.065 0.935
13 C -0.071 4.071
14 N -0.966 5.966
15 Si 0.970 3.030
16 H -0.284 1.284
17 H -0.293 1.293
18 H -0.276 1.276
19 N -0.702 5.702
20 C 0.511 3.489
21 O -0.570 6.570
22 C -0.114 4.114
23 C -0.008 4.008
24 C 0.224 3.776
25 N -0.577 5.577
26 C 0.277 3.723
27 N -0.477 5.477
28 H 0.458 0.542
29 N -0.346 5.346
30 H 0.064 0.936
31 H 0.033 0.967
32 H 0.075 0.925
33 H 0.084 0.916
34 H 0.075 0.925
35 H 0.045 0.955
36 H 0.084 0.916
37 H 0.058 0.942
38 H 0.072 0.928
39 H 0.041 0.959
40 H 0.057 0.943
41 H 0.009 0.991
42 H 0.018 0.982
43 H 0.376 0.624
44 H 0.251 0.749
45 H 0.413 0.587
46 H 0.119 0.881
47 H 0.109 0.891
48 H 0.078 0.922
49 H 0.088 0.912
50 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.388 -29.017 9.331 30.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.105 4.105
3 H 0.074 0.926
4 C -0.141 4.141
5 C -0.156 4.156
6 C -0.142 4.142
7 C -0.161 4.161
8 C 0.110 3.890
9 C 0.023 3.977
10 N -0.375 5.375
11 C -0.374 4.374
12 H 0.083 0.917
13 C -0.264 4.264
14 N -0.617 5.617
15 Si 0.799 3.201
16 H -0.211 1.211
17 H -0.219 1.219
18 H -0.202 1.202
19 N -0.355 5.355
20 C 0.299 3.701
21 O -0.449 6.449
22 C -0.155 4.155
23 C -0.049 4.049
24 C -0.059 4.059
25 N -0.306 5.306
26 C -0.021 4.021
27 N -0.196 5.196
28 H 0.306 0.694
29 N -0.177 5.177
30 H 0.083 0.917
31 H 0.052 0.948
32 H 0.094 0.906
33 H 0.102 0.898
34 H 0.094 0.906
35 H 0.063 0.937
36 H 0.103 0.897
37 H 0.077 0.923
38 H 0.090 0.910
39 H 0.060 0.940
40 H 0.076 0.924
41 H 0.027 0.973
42 H 0.036 0.964
43 H 0.210 0.790
44 H 0.060 0.940
45 H 0.251 0.749
46 H 0.137 0.863
47 H 0.128 0.872
48 H 0.097 0.903
49 H 0.107 0.893
50 H 0.289 0.711
Dipole moment (debyes) X Y Z Total
from point charges -4.189 -28.230 8.312 29.725
hybrid contribution -0.519 0.683 -0.842 1.202
sum -4.708 -27.547 7.470 28.927
Atomic orbital electron populations
1.21780 0.94199 1.02221 1.01535 1.21241 0.96613 0.99017 0.93603
0.92615 1.21579 0.95227 1.01151 0.96188 1.21550 0.96028 1.00178
0.97801 1.21424 0.99897 0.99429 0.93460 1.21790 0.94781 1.00112
0.99458 1.20089 0.93279 0.81215 0.94452 1.21057 0.96038 0.84347
0.96292 1.42408 1.60701 1.03837 1.30543 1.19531 1.23985 0.90166
1.03679 0.91746 1.25466 1.01372 0.98627 1.00910 1.69800 1.42068
1.15065 1.34724 0.85186 0.77221 0.78664 0.78982 1.21059 1.21944
1.20155 1.45895 1.49682 1.10078 1.29884 1.21028 0.79137 0.88785
0.81168 1.90723 1.40172 1.79332 1.34697 1.21470 1.03737 0.89686
1.00647 1.19509 1.02193 0.83993 0.99175 1.24189 0.89393 0.97586
0.94722 1.70435 1.33545 0.99344 1.27310 1.27088 0.83528 1.00274
0.91221 1.48097 1.21464 1.07163 1.42883 0.69350 1.77975 1.23167
0.90448 1.26084 0.91685 0.94750 0.90639 0.89754 0.90593 0.93653
0.89702 0.92336 0.90950 0.93992 0.92435 0.97299 0.96423 0.78967
0.93983 0.74867 0.86281 0.87243 0.90297 0.89317 0.71093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.88 8.67 71.98 0.62 -3.26 16
2 C -0.09 -2.60 1.78 -10.79 -0.02 -2.62 16
3 H 0.06 2.19 6.67 -2.39 -0.02 2.17 16
4 C -0.10 -2.27 5.03 30.59 0.15 -2.11 16
5 C -0.12 -2.77 5.92 30.60 0.18 -2.58 16
6 C -0.10 -2.80 5.77 30.60 0.18 -2.62 16
7 C -0.12 -4.45 4.33 30.61 0.13 -4.32 16
8 C 0.20 6.62 0.11 3.62 0.00 6.62 16
9 C 0.15 6.79 4.56 86.38 0.39 7.19 16
10 N -0.73 -39.47 5.00 -343.44 -1.72 -41.19 16
11 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16
12 H 0.06 3.80 7.83 -2.91 -0.02 3.78 16
13 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16
14 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16
15 Si 0.97 48.43 29.55 68.60 2.03 50.46 16
16 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16
17 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16
18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16
19 N -0.70 -17.76 3.74 -422.83 -1.58 -19.34 16
20 C 0.51 14.13 7.17 87.66 0.63 14.76 16
21 O -0.57 -21.59 12.28 -3.05 -0.04 -21.63 16
22 C -0.11 -2.21 5.68 29.85 0.17 -2.04 16
23 C -0.01 -0.19 5.13 29.85 0.15 -0.04 16
24 C 0.22 4.87 7.39 138.63 1.03 5.90 16
25 N -0.58 -10.94 11.19 -191.80 -2.15 -13.09 16
26 C 0.28 2.57 13.13 180.36 2.37 4.93 16
27 N -0.48 -5.09 7.45 -60.49 -0.45 -5.54 16
28 H 0.46 1.24 8.96 -213.10 -1.91 -0.67 16
29 N -0.35 -7.20 12.80 -51.33 -0.66 -7.86 16
30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.03 1.20 6.55 -2.39 -0.02 1.19 16
32 H 0.07 1.56 6.78 -2.39 -0.02 1.54 16
33 H 0.08 1.38 6.95 -2.39 -0.02 1.36 16
34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
38 H 0.07 1.69 7.54 -2.39 -0.02 1.68 16
39 H 0.04 1.79 7.08 -2.39 -0.02 1.78 16
40 H 0.06 2.37 6.06 -2.39 -0.01 2.36 16
41 H 0.01 0.47 6.44 -2.39 -0.02 0.45 16
42 H 0.02 0.81 6.71 -2.39 -0.02 0.79 16
43 H 0.38 21.19 5.38 -92.71 -0.50 20.69 16
44 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16
45 H 0.41 7.38 6.18 -92.71 -0.57 6.81 16
46 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16
47 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
48 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16
49 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16
50 H 0.27 -0.81 8.06 -2.91 -0.02 -0.84 16
Total: -1.00 -84.04 385.24 1.02 -83.02
By element:
Atomic # 1 Polarization: 35.17 SS G_CDS: -2.00 Total: 33.18 kcal
Atomic # 6 Polarization: -4.86 SS G_CDS: 7.29 Total: 2.44 kcal
Atomic # 7 Polarization: -141.20 SS G_CDS: -6.27 Total: -147.47 kcal
Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.63 kcal
Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal
Total: -84.04 1.02 -83.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568035142.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.785 kcal
(2) G-P(sol) polarization free energy of solvation -84.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds