Wall clock time and date at job start Wed Apr 1 2020 00:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70673 * 2 1 4 4 C 1.53191 * 109.58772 * 239.64483 * 2 1 3 5 5 C 1.53044 * 109.31543 * 294.84624 * 4 2 1 6 6 H 1.09003 * 109.45373 * 58.63923 * 5 4 2 7 7 N 1.46492 * 109.46395 * 178.61129 * 5 4 2 8 8 C 1.36935 * 120.00376 * 205.02971 * 7 5 4 9 9 H 1.08003 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99941 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00122 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00115 * 12 10 8 16 16 C 1.53045 * 109.52477 * 298.63243 * 5 4 2 17 17 C 1.53187 * 109.31246 * 61.38315 * 16 5 4 18 18 N 1.46922 * 108.76721 * 305.33799 * 17 16 5 19 19 C 1.34776 * 120.63639 * 233.64607 * 18 17 16 20 20 O 1.21276 * 120.00077 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99565 * 359.97412 * 19 18 17 22 22 C 1.53002 * 109.46776 * 180.02562 * 21 19 18 23 23 C 1.53007 * 109.46903 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.46691 * 179.97438 * 23 22 21 25 25 C 1.50700 * 109.46565 * 179.97438 * 24 23 22 26 26 C 1.35351 * 126.91417 * 85.00298 * 25 24 23 27 27 N 1.33768 * 106.50197 * 179.97438 * 26 25 24 28 28 N 1.28638 * 108.88177 * 359.97438 * 27 26 25 29 29 N 1.28715 * 110.17845 * 359.75308 * 28 27 26 30 30 H 0.97001 * 125.86889 * 180.23562 * 29 28 27 31 31 H 1.08997 * 109.47188 * 180.35595 * 1 2 3 32 32 H 1.09001 * 109.47113 * 300.35475 * 1 2 3 33 33 H 1.09004 * 109.47258 * 60.35788 * 1 2 3 34 34 H 1.09005 * 109.49798 * 174.89943 * 4 2 1 35 35 H 1.08996 * 109.52632 * 54.81538 * 4 2 1 36 36 H 0.97009 * 119.99477 * 25.03555 * 7 5 4 37 37 H 0.97006 * 119.99732 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.48949 * 181.31797 * 16 5 4 39 39 H 1.09000 * 109.49268 * 301.41215 * 16 5 4 40 40 H 1.09000 * 109.58249 * 185.56126 * 17 16 5 41 41 H 1.08997 * 109.60224 * 65.12967 * 17 16 5 42 42 H 1.09001 * 109.47211 * 300.00026 * 21 19 18 43 43 H 1.08993 * 109.46944 * 60.00505 * 21 19 18 44 44 H 1.09001 * 109.46765 * 299.99678 * 22 21 19 45 45 H 1.08993 * 109.47479 * 60.00211 * 22 21 19 46 46 H 1.08993 * 109.46819 * 299.99624 * 23 22 21 47 47 H 1.08993 * 109.47007 * 59.99768 * 23 22 21 48 48 H 1.08993 * 109.47433 * 299.99555 * 24 23 22 49 49 H 1.08993 * 109.47334 * 60.00274 * 24 23 22 50 50 H 1.08007 * 126.74955 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1702 6 1 0.5565 -2.2815 -1.0991 7 7 2.1023 -2.8978 -2.3754 8 6 1.4646 -4.0336 -2.7978 9 1 0.6216 -4.4178 -2.2426 10 6 1.9017 -4.6911 -3.9395 11 7 1.2884 -5.7826 -4.3458 12 14 3.3592 -4.0262 -4.9001 13 1 4.6127 -4.6258 -4.3760 14 1 3.4174 -2.5497 -4.7525 15 1 3.2065 -4.3745 -6.3356 16 6 2.2803 -2.8462 0.0635 17 6 1.7691 -2.1410 1.3237 18 7 2.0225 -0.6996 1.1945 19 6 2.6944 -0.0318 2.1532 20 8 2.8976 1.1579 2.0345 21 6 3.1932 -0.7635 3.3725 22 6 3.9162 0.2187 4.2964 23 6 4.4232 -0.5244 5.5342 24 6 5.1467 0.4577 6.4577 25 6 5.6455 -0.2740 7.6771 26 6 6.8073 -0.9582 7.7960 27 7 6.8376 -1.4417 9.0428 28 7 5.7658 -1.0804 9.6556 29 7 5.0250 -0.3738 8.8754 30 1 4.1679 0.0176 9.1060 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8932 34 1 3.1297 -0.6504 -1.2913 35 1 1.6080 -0.2786 -2.1371 36 1 2.8593 -2.5525 -2.8742 37 1 1.5941 -6.2423 -5.1434 38 1 2.0127 -3.9021 0.1037 39 1 3.3642 -2.7470 0.0051 40 1 2.2943 -2.5275 2.1971 41 1 0.6986 -2.3156 1.4316 42 1 2.3489 -1.2054 3.9018 43 1 3.8828 -1.5504 3.0672 44 1 4.7604 0.6608 3.7674 45 1 3.2263 1.0053 4.6017 46 1 3.5792 -0.9668 6.0633 47 1 5.1131 -1.3108 5.2285 48 1 5.9906 0.8998 5.9284 49 1 4.4570 1.2444 6.7634 50 1 7.5616 -1.0882 7.0339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569523842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:53 Heat of formation + Delta-G solvation = 50.336033 kcal Electronic energy + Delta-G solvation = -28486.006567 eV Core-core repulsion = 24549.861412 eV Total energy + Delta-G solvation = -3936.145154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 16.81 seconds Orbital eigenvalues (eV) -43.71265 -40.39665 -37.95271 -36.29788 -34.73782 -33.81412 -33.13008 -32.20988 -31.88617 -29.96442 -29.31635 -27.49914 -25.64038 -24.20263 -23.39903 -22.96857 -22.53611 -21.72959 -21.31534 -20.25948 -18.67807 -18.47130 -17.56548 -17.08098 -16.47676 -16.33449 -15.77156 -15.24075 -15.07706 -14.94555 -14.61588 -14.13493 -14.03953 -13.84219 -13.62026 -13.50848 -13.10846 -12.89259 -12.75085 -12.59811 -12.45004 -12.07657 -11.98435 -11.86711 -11.71088 -11.61195 -11.43634 -11.25285 -11.08513 -11.02339 -11.00690 -10.96302 -10.88594 -10.58081 -10.27666 -9.82759 -9.74391 -9.64474 -9.55411 -8.98302 -8.59079 -7.34322 -5.83251 -3.19245 1.11429 2.14278 2.29769 2.60608 2.97053 3.33002 3.36321 3.41498 3.91473 4.16755 4.36605 4.42048 4.47658 4.53593 4.67712 4.85224 4.89935 4.96890 4.99710 5.04213 5.07515 5.08304 5.18541 5.26049 5.33536 5.37506 5.41082 5.48111 5.51502 5.51780 5.63853 5.68412 5.71346 5.75846 5.83243 5.94349 5.97114 5.99583 6.14342 6.19494 6.31373 6.34302 6.37879 6.51212 6.75780 6.88443 7.44942 7.91910 8.02719 8.16159 8.35764 9.13870 9.86819 10.06428 11.34821 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.001959 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.293214 B =14291.827964 C =15248.144703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.137 4.137 5 C 0.183 3.817 6 H 0.059 0.941 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.514 3.486 20 O -0.552 6.552 21 C -0.141 4.141 22 C -0.103 4.103 23 C -0.116 4.116 24 C -0.049 4.049 25 C -0.005 4.005 26 C -0.048 4.048 27 N -0.266 5.266 28 N -0.086 5.086 29 N -0.391 5.391 30 H 0.447 0.553 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 14.224 22.156 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.203 1.203 15 H -0.217 1.217 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.302 3.698 20 O -0.431 6.431 21 C -0.181 4.181 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.205 4.205 27 N -0.133 5.133 28 N -0.066 5.066 29 N -0.112 5.112 30 H 0.292 0.708 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.067 13.951 23.439 27.578 hybrid contribution 0.350 0.802 -1.785 1.988 sum 4.417 14.753 21.654 26.572 Atomic orbital electron populations 1.22140 0.94945 1.02866 1.01938 1.21146 0.94090 0.97058 0.83905 0.88681 1.22255 1.01198 0.97298 0.96863 1.20172 0.97404 0.88759 0.86326 0.92262 1.42800 1.37746 1.30436 1.28021 1.19046 1.11356 0.99564 1.07485 0.89204 1.24677 0.98970 0.97243 0.98188 1.69701 1.42645 1.19469 1.26192 0.86562 0.83580 0.78481 0.79941 1.21123 1.20345 1.21745 1.22643 1.00994 1.00931 0.94731 1.21859 1.01117 0.79199 0.99564 1.48302 1.55139 1.09632 1.20493 1.20641 0.77502 0.87435 0.84199 1.90663 1.57912 1.15464 1.79037 1.21702 1.01856 0.99791 0.94729 1.21331 1.00805 0.97524 0.94422 1.21639 1.00167 0.98105 0.95555 1.20216 1.01615 0.96968 0.90070 1.22402 0.95942 1.05580 0.89963 1.23471 0.98776 1.01854 0.96437 1.75118 1.13030 1.19327 1.05788 1.78313 0.99836 1.09797 1.18620 1.45154 1.19861 1.36965 1.09188 0.70763 0.91548 0.92879 0.91343 0.92014 0.90549 0.80672 0.93030 0.90149 0.92280 0.90301 0.91282 0.89037 0.88696 0.90761 0.91089 0.91800 0.90873 0.88367 0.90175 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.02 37.15 0.34 -1.54 16 2 C 0.14 1.84 3.21 -67.60 -0.22 1.62 16 3 H 0.10 1.32 7.00 -51.93 -0.36 0.96 16 4 C -0.14 -2.04 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.17 2.52 -67.89 -0.17 3.00 16 6 H 0.06 1.07 6.44 -51.93 -0.33 0.73 16 7 N -0.75 -16.65 4.92 -53.39 -0.26 -16.91 16 8 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 9 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 12 Si 0.88 21.59 27.73 -169.99 -4.71 16.87 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 C -0.15 -2.27 5.66 -26.61 -0.15 -2.42 16 17 C 0.11 1.18 5.93 -3.72 -0.02 1.16 16 18 N -0.60 -7.29 2.68 -165.23 -0.44 -7.74 16 19 C 0.51 6.14 7.70 -10.99 -0.08 6.06 16 20 O -0.55 -8.36 15.39 5.56 0.09 -8.27 16 21 C -0.14 -1.10 4.05 -27.88 -0.11 -1.21 16 22 C -0.10 -0.68 4.50 -26.73 -0.12 -0.80 16 23 C -0.12 -0.52 5.20 -26.73 -0.14 -0.66 16 24 C -0.05 -0.18 5.78 -27.88 -0.16 -0.34 16 25 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 26 C -0.05 -0.37 11.99 -17.74 -0.21 -0.58 16 27 N -0.27 -2.86 12.41 30.24 0.38 -2.49 16 28 N -0.09 -0.84 13.38 60.35 0.81 -0.03 16 29 N -0.39 -2.33 6.98 33.54 0.23 -2.10 16 30 H 0.45 1.03 8.96 -190.40 -1.71 -0.68 16 31 H 0.07 0.80 5.72 -51.93 -0.30 0.51 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 41 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 42 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 44 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 45 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -35.03 396.13 -8.68 -43.71 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.52 Total: 3.80 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.98 Total: -5.11 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 1.49 Total: -56.97 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.03 -8.68 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569523842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.049 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.81 seconds