Wall clock time and date at job start Wed Apr 1 2020 00:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70673 * 2 1 4 4 C 1.53191 * 109.58772 * 239.64483 * 2 1 3 5 5 C 1.53044 * 109.31543 * 294.84624 * 4 2 1 6 6 H 1.09003 * 109.45373 * 58.63923 * 5 4 2 7 7 N 1.46492 * 109.46395 * 178.61129 * 5 4 2 8 8 C 1.36935 * 120.00376 * 205.02971 * 7 5 4 9 9 H 1.08003 * 119.99724 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00063 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99887 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 89.99941 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00122 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00115 * 12 10 8 16 16 C 1.53045 * 109.52477 * 298.63243 * 5 4 2 17 17 C 1.53187 * 109.31246 * 61.38315 * 16 5 4 18 18 N 1.46922 * 108.76721 * 305.33799 * 17 16 5 19 19 C 1.34776 * 120.63639 * 233.64607 * 18 17 16 20 20 O 1.21276 * 120.00077 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99565 * 359.97412 * 19 18 17 22 22 C 1.53002 * 109.46776 * 180.02562 * 21 19 18 23 23 C 1.53007 * 109.46903 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.46691 * 179.97438 * 23 22 21 25 25 C 1.50700 * 109.46565 * 179.97438 * 24 23 22 26 26 C 1.35351 * 126.91417 * 85.00298 * 25 24 23 27 27 N 1.33768 * 106.50197 * 179.97438 * 26 25 24 28 28 N 1.28638 * 108.88177 * 359.97438 * 27 26 25 29 29 N 1.28715 * 110.17845 * 359.75308 * 28 27 26 30 30 H 0.97001 * 125.86889 * 180.23562 * 29 28 27 31 31 H 1.08997 * 109.47188 * 180.35595 * 1 2 3 32 32 H 1.09001 * 109.47113 * 300.35475 * 1 2 3 33 33 H 1.09004 * 109.47258 * 60.35788 * 1 2 3 34 34 H 1.09005 * 109.49798 * 174.89943 * 4 2 1 35 35 H 1.08996 * 109.52632 * 54.81538 * 4 2 1 36 36 H 0.97009 * 119.99477 * 25.03555 * 7 5 4 37 37 H 0.97006 * 119.99732 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.48949 * 181.31797 * 16 5 4 39 39 H 1.09000 * 109.49268 * 301.41215 * 16 5 4 40 40 H 1.09000 * 109.58249 * 185.56126 * 17 16 5 41 41 H 1.08997 * 109.60224 * 65.12967 * 17 16 5 42 42 H 1.09001 * 109.47211 * 300.00026 * 21 19 18 43 43 H 1.08993 * 109.46944 * 60.00505 * 21 19 18 44 44 H 1.09001 * 109.46765 * 299.99678 * 22 21 19 45 45 H 1.08993 * 109.47479 * 60.00211 * 22 21 19 46 46 H 1.08993 * 109.46819 * 299.99624 * 23 22 21 47 47 H 1.08993 * 109.47007 * 59.99768 * 23 22 21 48 48 H 1.08993 * 109.47433 * 299.99555 * 24 23 22 49 49 H 1.08993 * 109.47334 * 60.00274 * 24 23 22 50 50 H 1.08007 * 126.74955 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1702 6 1 0.5565 -2.2815 -1.0991 7 7 2.1023 -2.8978 -2.3754 8 6 1.4646 -4.0336 -2.7978 9 1 0.6216 -4.4178 -2.2426 10 6 1.9017 -4.6911 -3.9395 11 7 1.2884 -5.7826 -4.3458 12 14 3.3592 -4.0262 -4.9001 13 1 4.6127 -4.6258 -4.3760 14 1 3.4174 -2.5497 -4.7525 15 1 3.2065 -4.3745 -6.3356 16 6 2.2803 -2.8462 0.0635 17 6 1.7691 -2.1410 1.3237 18 7 2.0225 -0.6996 1.1945 19 6 2.6944 -0.0318 2.1532 20 8 2.8976 1.1579 2.0345 21 6 3.1932 -0.7635 3.3725 22 6 3.9162 0.2187 4.2964 23 6 4.4232 -0.5244 5.5342 24 6 5.1467 0.4577 6.4577 25 6 5.6455 -0.2740 7.6771 26 6 6.8073 -0.9582 7.7960 27 7 6.8376 -1.4417 9.0428 28 7 5.7658 -1.0804 9.6556 29 7 5.0250 -0.3738 8.8754 30 1 4.1679 0.0176 9.1060 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8932 34 1 3.1297 -0.6504 -1.2913 35 1 1.6080 -0.2786 -2.1371 36 1 2.8593 -2.5525 -2.8742 37 1 1.5941 -6.2423 -5.1434 38 1 2.0127 -3.9021 0.1037 39 1 3.3642 -2.7470 0.0051 40 1 2.2943 -2.5275 2.1971 41 1 0.6986 -2.3156 1.4316 42 1 2.3489 -1.2054 3.9018 43 1 3.8828 -1.5504 3.0672 44 1 4.7604 0.6608 3.7674 45 1 3.2263 1.0053 4.6017 46 1 3.5792 -0.9668 6.0633 47 1 5.1131 -1.3108 5.2285 48 1 5.9906 0.8998 5.9284 49 1 4.4570 1.2444 6.7634 50 1 7.5616 -1.0882 7.0339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569523842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:44 Heat of formation + Delta-G solvation = 26.369207 kcal Electronic energy + Delta-G solvation = -28487.045846 eV Core-core repulsion = 24549.861412 eV Total energy + Delta-G solvation = -3937.184434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -44.25518 -41.39259 -39.06876 -36.82177 -36.29638 -34.41948 -34.05191 -33.65072 -32.89086 -31.49634 -29.94590 -28.65720 -26.30442 -25.65863 -24.27213 -23.98380 -23.32128 -22.62692 -22.04894 -21.27036 -20.02655 -19.14730 -18.96131 -18.14999 -17.05405 -16.98103 -16.77265 -16.68631 -15.89138 -15.83684 -15.44662 -15.22706 -15.13683 -14.96671 -14.81017 -14.51580 -14.31559 -14.13215 -13.63678 -13.46279 -13.37050 -13.11565 -12.97900 -12.94017 -12.73239 -12.52458 -12.40370 -12.17792 -12.12811 -12.10463 -11.97839 -11.92662 -11.78432 -11.77163 -11.57488 -11.39144 -11.11137 -10.94612 -10.68000 -10.09049 -9.61711 -9.29107 -8.00466 -5.33029 0.61051 1.38636 1.40251 1.47780 1.56029 1.70665 1.91886 2.06295 2.49259 3.31158 3.43794 3.53172 3.64525 3.78076 3.87766 3.97402 4.04833 4.05910 4.09901 4.20370 4.25818 4.33469 4.41692 4.51670 4.54993 4.56447 4.60405 4.62942 4.70736 4.76185 4.81724 4.88344 4.90071 5.01420 5.03443 5.05950 5.08507 5.15455 5.23783 5.26563 5.33497 5.40819 5.52039 5.54805 5.68291 5.80140 6.02811 6.23690 6.52155 7.09799 7.24350 7.45576 7.86974 8.04622 9.20753 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.001959 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.293214 B =14291.827964 C =15248.144703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.127 4.127 5 C 0.175 3.825 6 H 0.052 0.948 7 N -0.753 5.753 8 C -0.221 4.221 9 H 0.062 0.938 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.281 1.281 14 H -0.255 1.255 15 H -0.300 1.300 16 C -0.144 4.144 17 C 0.114 3.886 18 N -0.605 5.605 19 C 0.509 3.491 20 O -0.587 6.587 21 C -0.138 4.138 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.044 4.044 25 C 0.012 3.988 26 C -0.064 4.064 27 N -0.307 5.307 28 N -0.119 5.119 29 N -0.377 5.377 30 H 0.462 0.538 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 15.850 23.435 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.166 4.166 5 C 0.068 3.932 6 H 0.070 0.930 7 N -0.396 5.396 8 C -0.352 4.352 9 H 0.080 0.920 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.207 1.207 14 H -0.180 1.180 15 H -0.227 1.227 16 C -0.185 4.185 17 C -0.008 4.008 18 N -0.338 5.338 19 C 0.300 3.700 20 O -0.468 6.468 21 C -0.177 4.177 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.222 4.222 27 N -0.173 5.173 28 N -0.099 5.099 29 N -0.100 5.100 30 H 0.310 0.690 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.195 0.805 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.125 0.875 49 H 0.115 0.885 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.568 15.620 24.796 29.659 hybrid contribution 0.099 0.367 -2.158 2.191 sum 4.667 15.987 22.637 28.104 Atomic orbital electron populations 1.22083 0.93851 1.02704 1.02655 1.21014 0.94877 0.96428 0.83573 0.89372 1.22131 1.00907 0.95531 0.98055 1.20433 0.97185 0.90094 0.85516 0.92984 1.42862 1.37535 1.29462 1.29717 1.19014 1.09824 1.00082 1.06286 0.92022 1.25437 1.02346 0.97958 0.99876 1.69873 1.44991 1.21500 1.27038 0.85481 0.79994 0.79048 0.77654 1.20732 1.17956 1.22659 1.22448 1.00610 1.00067 0.95384 1.21860 1.02078 0.78255 0.98650 1.48375 1.55186 1.09892 1.20304 1.21401 0.76493 0.87201 0.84915 1.90651 1.59057 1.17206 1.79869 1.21800 1.02973 0.99900 0.93057 1.21256 1.00108 0.97293 0.94826 1.21541 1.00437 0.97934 0.94685 1.20279 1.02283 0.96895 0.88904 1.22666 0.95077 1.04345 0.90195 1.23948 1.00113 1.02074 0.96029 1.75067 1.13985 1.20853 1.07406 1.78243 1.00490 1.11503 1.19658 1.45189 1.20064 1.35802 1.08915 0.68962 0.92045 0.91968 0.90912 0.92416 0.90796 0.80529 0.93530 0.91909 0.92561 0.86813 0.90298 0.86701 0.87344 0.91981 0.91654 0.91047 0.90756 0.87463 0.88533 0.77347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.02 71.98 0.65 -2.68 16 2 C 0.15 3.52 3.21 44.97 0.14 3.66 16 3 H 0.09 2.32 7.00 -2.39 -0.02 2.31 16 4 C -0.13 -3.61 5.02 30.67 0.15 -3.46 16 5 C 0.18 5.90 2.52 45.02 0.11 6.01 16 6 H 0.05 1.84 6.44 -2.39 -0.02 1.82 16 7 N -0.75 -33.00 4.92 -322.81 -1.59 -34.59 16 8 C -0.22 -11.95 10.41 84.03 0.87 -11.08 16 9 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 10 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 11 N -0.98 -61.61 13.97 21.65 0.30 -61.30 16 12 Si 0.95 44.69 27.73 68.60 1.90 46.60 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 16 C -0.14 -4.07 5.66 30.67 0.17 -3.89 16 17 C 0.11 2.20 5.93 86.36 0.51 2.71 16 18 N -0.61 -13.06 2.68 -795.05 -2.13 -15.19 16 19 C 0.51 10.77 7.70 87.66 0.67 11.45 16 20 O -0.59 -16.68 15.39 -3.02 -0.05 -16.73 16 21 C -0.14 -1.62 4.05 29.85 0.12 -1.50 16 22 C -0.10 -0.96 4.50 30.60 0.14 -0.82 16 23 C -0.11 -0.57 5.20 30.60 0.16 -0.41 16 24 C -0.04 -0.18 5.78 29.85 0.17 0.00 16 25 C 0.01 0.11 6.56 41.36 0.27 0.39 16 26 C -0.06 -0.88 11.99 83.73 1.00 0.12 16 27 N -0.31 -6.51 12.41 -58.25 -0.72 -7.23 16 28 N -0.12 -2.26 13.38 37.02 0.50 -1.77 16 29 N -0.38 -3.84 6.98 -47.79 -0.33 -4.17 16 30 H 0.46 1.15 8.96 -219.96 -1.97 -0.82 16 31 H 0.06 1.38 5.72 -2.39 -0.01 1.37 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.36 15.60 5.66 -92.70 -0.52 15.08 16 37 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 38 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.11 1.45 5.93 -2.39 -0.01 1.44 16 41 H 0.08 1.43 7.48 -2.39 -0.02 1.41 16 42 H 0.11 0.87 7.94 -2.39 -0.02 0.85 16 43 H 0.11 1.05 7.69 -2.39 -0.02 1.03 16 44 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 45 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 46 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 49 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.20 396.13 1.91 -76.30 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -1.60 Total: 20.85 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.63 Total: -2.75 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -3.98 Total: -124.26 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.60 kcal Total: -78.20 1.91 -76.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569523842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.665 kcal (2) G-P(sol) polarization free energy of solvation -78.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds