Wall clock time and date at job start Wed Apr 1 2020 00:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.69876 * 2 1 4 4 C 1.53187 * 109.58404 * 120.35159 * 2 1 3 5 5 C 1.53047 * 109.31145 * 174.42494 * 4 2 1 6 6 H 1.08997 * 109.45615 * 58.64367 * 5 4 2 7 7 N 1.46502 * 109.45782 * 178.61637 * 5 4 2 8 8 C 1.36939 * 119.99650 * 204.99674 * 7 5 4 9 9 H 1.07998 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99936 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00157 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00023 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46819 * 270.00215 * 12 10 8 14 14 H 1.48496 * 109.47281 * 149.99983 * 12 10 8 15 15 H 1.48504 * 109.46886 * 30.00162 * 12 10 8 16 16 C 1.53039 * 109.53650 * 298.63636 * 5 4 2 17 17 C 1.53184 * 109.31492 * 61.36293 * 16 5 4 18 18 N 1.46921 * 109.58960 * 239.64250 * 2 1 3 19 19 C 1.34782 * 120.63083 * 6.62385 * 18 2 1 20 20 O 1.21284 * 119.99730 * 5.72216 * 19 18 2 21 21 C 1.50697 * 120.00213 * 185.71431 * 19 18 2 22 22 C 1.53000 * 109.47105 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46809 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.46691 * 179.97438 * 23 22 21 25 25 C 1.50705 * 109.46816 * 180.02562 * 24 23 22 26 26 C 1.35349 * 126.91501 * 85.00282 * 25 24 23 27 27 N 1.33767 * 106.49569 * 179.97438 * 26 25 24 28 28 N 1.28630 * 108.89019 * 0.02562 * 27 26 25 29 29 N 1.28711 * 110.17557 * 359.75253 * 28 27 26 30 30 H 0.97005 * 125.86682 * 180.24430 * 29 28 27 31 31 H 1.09000 * 109.47775 * 294.10729 * 1 2 3 32 32 H 1.08998 * 109.47138 * 54.11005 * 1 2 3 33 33 H 1.09004 * 109.47363 * 174.10554 * 1 2 3 34 34 H 1.09000 * 109.50117 * 54.47377 * 4 2 1 35 35 H 1.08998 * 109.50568 * 294.37710 * 4 2 1 36 36 H 0.96999 * 120.00148 * 25.00046 * 7 5 4 37 37 H 0.97007 * 119.99924 * 359.97438 * 11 10 8 38 38 H 1.09003 * 109.49772 * 181.32130 * 16 5 4 39 39 H 1.09002 * 109.49522 * 301.40970 * 16 5 4 40 40 H 1.08998 * 109.59282 * 185.57424 * 17 16 5 41 41 H 1.09001 * 109.70366 * 65.22028 * 17 16 5 42 42 H 1.08998 * 109.46946 * 300.00228 * 21 19 18 43 43 H 1.08998 * 109.46902 * 59.99964 * 21 19 18 44 44 H 1.08998 * 109.46999 * 299.99698 * 22 21 19 45 45 H 1.08998 * 109.47675 * 59.99941 * 22 21 19 46 46 H 1.08998 * 109.47056 * 299.99617 * 23 22 21 47 47 H 1.09000 * 109.47159 * 60.00070 * 23 22 21 48 48 H 1.08998 * 109.47503 * 299.99888 * 24 23 22 49 49 H 1.09000 * 109.46817 * 60.00405 * 24 23 22 50 50 H 1.07998 * 126.74842 * 359.94129 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1702 6 1 4.0060 0.1475 1.0992 7 7 4.0651 -1.5156 2.3755 8 6 5.3496 -1.2986 2.7976 9 1 5.9956 -0.6348 2.2422 10 6 5.8210 -1.9308 3.9399 11 7 5.0336 -2.7393 4.6171 12 14 7.5731 -1.6342 4.5161 13 1 8.4756 -2.6341 3.8909 14 1 7.6371 -1.7652 5.9939 15 1 7.9992 -0.2675 4.1214 16 6 3.9569 -1.6656 -0.0633 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0057 -0.8059 -2.0871 21 6 1.6691 -1.9341 -3.3085 22 6 0.5050 -2.2589 -4.2468 23 6 1.0143 -3.0999 -5.4191 24 6 -0.1500 -3.4252 -6.3569 25 6 0.3514 -4.2541 -7.5113 26 6 0.5098 -5.5981 -7.5388 27 7 0.9747 -5.9009 -8.7560 28 7 1.0968 -4.8165 -9.4369 29 7 0.7294 -3.8051 -8.7306 30 1 0.7259 -2.8798 -9.0217 31 1 -0.3634 0.4197 0.9380 32 1 -0.3633 0.6024 -0.8325 33 1 -0.3634 -1.0223 -0.1055 34 1 1.6029 -1.7252 1.2914 35 1 1.7659 -0.1668 2.1369 36 1 3.4848 -2.1115 2.8746 37 1 4.1236 -2.8930 4.3181 38 1 5.0413 -1.7695 -0.1035 39 1 3.4984 -2.6527 -0.0050 40 1 3.6519 -1.5717 -2.1970 41 1 3.9901 0.0019 -1.4341 42 1 2.4293 -1.3745 -3.8535 43 1 2.1012 -2.8608 -2.9307 44 1 -0.2554 -2.8184 -3.7020 45 1 0.0733 -1.3321 -4.6245 46 1 1.7749 -2.5408 -5.9639 47 1 1.4456 -4.0268 -5.0410 48 1 -0.9104 -3.9844 -5.8119 49 1 -0.5817 -2.4985 -6.7351 50 1 0.3021 -6.2897 -6.7358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569523844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:36 Heat of formation + Delta-G solvation = 60.178382 kcal Electronic energy + Delta-G solvation = -28526.422411 eV Core-core repulsion = 24590.704053 eV Total energy + Delta-G solvation = -3935.718358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -43.71060 -40.52828 -37.70735 -36.33426 -34.77291 -33.86264 -33.32765 -32.19853 -32.08036 -29.56797 -28.92244 -27.02256 -25.55283 -24.08509 -23.39473 -23.06764 -22.64043 -21.80410 -21.16296 -20.26510 -18.93932 -18.57358 -17.33621 -16.84700 -16.46217 -16.32207 -16.01067 -15.30548 -14.99748 -14.84057 -14.65529 -14.15397 -14.13783 -13.82982 -13.63308 -13.50036 -13.21121 -12.91469 -12.75557 -12.42044 -12.22792 -12.17982 -11.86512 -11.74651 -11.66888 -11.58125 -11.44872 -11.24207 -11.02099 -10.96044 -10.88436 -10.86928 -10.59052 -10.49698 -10.14382 -10.05515 -9.58219 -9.26746 -9.01889 -8.96451 -8.49280 -7.10441 -6.15426 -3.16118 1.11700 2.14624 2.29999 2.61361 2.98859 3.47461 3.52056 3.66146 3.91847 4.17103 4.37077 4.43213 4.49196 4.60662 4.68420 4.87677 4.90752 4.98542 5.03089 5.06318 5.08032 5.15670 5.23394 5.31246 5.34846 5.40728 5.42210 5.49514 5.52218 5.58418 5.71553 5.71934 5.79662 5.84048 5.90727 5.97442 6.01933 6.09481 6.24375 6.32073 6.35423 6.38113 6.41319 6.63298 6.78410 6.91644 7.48139 7.74925 8.03034 8.20735 8.70098 9.16577 10.03085 10.18077 11.32753 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.001945 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.448271 B =14390.563587 C =15699.350380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.048 0.952 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.943 5.943 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.288 1.288 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.513 3.487 20 O -0.542 6.542 21 C -0.143 4.143 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.049 4.049 25 C -0.005 4.005 26 C -0.048 4.048 27 N -0.266 5.266 28 N -0.086 5.086 29 N -0.391 5.391 30 H 0.447 0.553 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.367 0.633 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 2.846 -22.910 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.588 5.588 12 Si 0.913 3.087 13 H -0.223 1.223 14 H -0.214 1.214 15 H -0.222 1.222 16 C -0.192 4.192 17 C -0.016 4.016 18 N -0.338 5.338 19 C 0.302 3.698 20 O -0.421 6.421 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.139 4.139 26 C -0.205 4.205 27 N -0.133 5.133 28 N -0.066 5.066 29 N -0.112 5.112 30 H 0.292 0.708 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.439 2.146 -23.125 25.069 hybrid contribution -1.380 1.082 -0.155 1.761 sum -10.819 3.228 -23.280 25.874 Atomic orbital electron populations 1.22169 0.92851 1.03404 1.00705 1.21274 0.95385 0.95099 0.83873 0.91279 1.22310 0.97554 1.00843 0.96761 1.20097 0.90763 0.94974 0.86793 0.93388 1.42444 1.13030 1.54817 1.27409 1.20049 0.89592 1.26438 1.10243 0.91729 1.25775 1.06280 0.97601 0.94619 1.70852 1.08135 1.38388 1.41439 0.83207 0.74119 0.75056 0.76344 1.22309 1.21375 1.22157 1.22651 1.01791 0.99884 0.94851 1.21854 0.79586 1.00565 0.99587 1.48269 1.07673 1.57524 1.20351 1.20605 0.86000 0.79896 0.83335 1.90722 1.17269 1.57103 1.76989 1.21747 1.00058 1.00861 0.95673 1.21320 0.97255 1.00503 0.94903 1.21642 0.97003 1.00929 0.95909 1.20218 0.98707 0.98675 0.91251 1.22407 1.06200 0.95888 0.89398 1.23471 1.05904 0.93679 0.97470 1.75114 1.15305 1.18729 1.04111 1.78309 1.18726 0.89664 1.19873 1.45153 1.44270 1.11755 1.10004 0.70770 0.93879 0.90711 0.91881 0.91979 0.90765 0.80030 0.93334 0.90605 0.92326 0.90344 0.91481 0.89230 0.88825 0.90756 0.91095 0.91847 0.90901 0.88366 0.90175 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 7.61 37.16 0.28 -1.54 16 2 C 0.15 2.03 3.49 -67.60 -0.24 1.79 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.18 4.84 -26.61 -0.13 -2.31 16 5 C 0.18 3.43 2.73 -67.88 -0.19 3.24 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.74 -17.65 5.12 -53.38 -0.27 -17.93 16 8 C -0.33 -9.00 9.93 -15.06 -0.15 -9.15 16 9 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 10 C -0.05 -1.28 5.50 -17.43 -0.10 -1.37 16 11 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 12 Si 1.08 25.39 29.92 -169.99 -5.09 20.30 16 13 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.15 -2.39 5.66 -26.62 -0.15 -2.54 16 17 C 0.11 1.27 6.35 -3.72 -0.02 1.24 16 18 N -0.60 -7.67 2.97 -165.23 -0.49 -8.16 16 19 C 0.51 6.18 7.50 -10.98 -0.08 6.10 16 20 O -0.54 -7.78 11.55 5.55 0.06 -7.72 16 21 C -0.14 -1.16 4.06 -27.88 -0.11 -1.27 16 22 C -0.10 -0.68 4.50 -26.73 -0.12 -0.80 16 23 C -0.12 -0.55 5.20 -26.73 -0.14 -0.69 16 24 C -0.05 -0.19 5.78 -27.88 -0.16 -0.35 16 25 C 0.00 -0.03 6.56 -82.08 -0.54 -0.57 16 26 C -0.05 -0.38 11.99 -17.74 -0.21 -0.59 16 27 N -0.27 -2.90 12.41 30.23 0.38 -2.53 16 28 N -0.09 -0.85 13.38 60.35 0.81 -0.04 16 29 N -0.39 -2.39 6.98 33.55 0.23 -2.15 16 30 H 0.45 1.08 8.96 -190.40 -1.71 -0.63 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.06 6.57 -51.93 -0.34 0.72 16 33 H 0.06 0.94 6.93 -51.93 -0.36 0.58 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.37 9.22 6.63 -40.82 -0.27 8.95 16 37 H 0.26 7.66 6.78 -40.82 -0.28 7.38 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.59 7.71 -51.93 -0.40 0.19 16 43 H 0.09 0.72 7.92 -51.93 -0.41 0.31 16 44 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 45 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.19 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -34.72 396.19 -9.31 -44.03 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -9.62 Total: 4.95 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.05 Total: -8.81 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 1.41 Total: -58.72 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.06 Total: -7.72 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.72 -9.31 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569523844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.204 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds