Wall clock time and date at job start Wed Apr 1 2020 00:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.69876 * 2 1 4 4 C 1.53187 * 109.58404 * 120.35159 * 2 1 3 5 5 C 1.53047 * 109.31145 * 174.42494 * 4 2 1 6 6 H 1.08997 * 109.45615 * 58.64367 * 5 4 2 7 7 N 1.46502 * 109.45782 * 178.61637 * 5 4 2 8 8 C 1.36939 * 119.99650 * 204.99674 * 7 5 4 9 9 H 1.07998 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99936 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00157 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00023 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46819 * 270.00215 * 12 10 8 14 14 H 1.48496 * 109.47281 * 149.99983 * 12 10 8 15 15 H 1.48504 * 109.46886 * 30.00162 * 12 10 8 16 16 C 1.53039 * 109.53650 * 298.63636 * 5 4 2 17 17 C 1.53184 * 109.31492 * 61.36293 * 16 5 4 18 18 N 1.46921 * 109.58960 * 239.64250 * 2 1 3 19 19 C 1.34782 * 120.63083 * 6.62385 * 18 2 1 20 20 O 1.21284 * 119.99730 * 5.72216 * 19 18 2 21 21 C 1.50697 * 120.00213 * 185.71431 * 19 18 2 22 22 C 1.53000 * 109.47105 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46809 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.46691 * 179.97438 * 23 22 21 25 25 C 1.50705 * 109.46816 * 180.02562 * 24 23 22 26 26 C 1.35349 * 126.91501 * 85.00282 * 25 24 23 27 27 N 1.33767 * 106.49569 * 179.97438 * 26 25 24 28 28 N 1.28630 * 108.89019 * 0.02562 * 27 26 25 29 29 N 1.28711 * 110.17557 * 359.75253 * 28 27 26 30 30 H 0.97005 * 125.86682 * 180.24430 * 29 28 27 31 31 H 1.09000 * 109.47775 * 294.10729 * 1 2 3 32 32 H 1.08998 * 109.47138 * 54.11005 * 1 2 3 33 33 H 1.09004 * 109.47363 * 174.10554 * 1 2 3 34 34 H 1.09000 * 109.50117 * 54.47377 * 4 2 1 35 35 H 1.08998 * 109.50568 * 294.37710 * 4 2 1 36 36 H 0.96999 * 120.00148 * 25.00046 * 7 5 4 37 37 H 0.97007 * 119.99924 * 359.97438 * 11 10 8 38 38 H 1.09003 * 109.49772 * 181.32130 * 16 5 4 39 39 H 1.09002 * 109.49522 * 301.40970 * 16 5 4 40 40 H 1.08998 * 109.59282 * 185.57424 * 17 16 5 41 41 H 1.09001 * 109.70366 * 65.22028 * 17 16 5 42 42 H 1.08998 * 109.46946 * 300.00228 * 21 19 18 43 43 H 1.08998 * 109.46902 * 59.99964 * 21 19 18 44 44 H 1.08998 * 109.46999 * 299.99698 * 22 21 19 45 45 H 1.08998 * 109.47675 * 59.99941 * 22 21 19 46 46 H 1.08998 * 109.47056 * 299.99617 * 23 22 21 47 47 H 1.09000 * 109.47159 * 60.00070 * 23 22 21 48 48 H 1.08998 * 109.47503 * 299.99888 * 24 23 22 49 49 H 1.09000 * 109.46817 * 60.00405 * 24 23 22 50 50 H 1.07998 * 126.74842 * 359.94129 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1702 6 1 4.0060 0.1475 1.0992 7 7 4.0651 -1.5156 2.3755 8 6 5.3496 -1.2986 2.7976 9 1 5.9956 -0.6348 2.2422 10 6 5.8210 -1.9308 3.9399 11 7 5.0336 -2.7393 4.6171 12 14 7.5731 -1.6342 4.5161 13 1 8.4756 -2.6341 3.8909 14 1 7.6371 -1.7652 5.9939 15 1 7.9992 -0.2675 4.1214 16 6 3.9569 -1.6656 -0.0633 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0057 -0.8059 -2.0871 21 6 1.6691 -1.9341 -3.3085 22 6 0.5050 -2.2589 -4.2468 23 6 1.0143 -3.0999 -5.4191 24 6 -0.1500 -3.4252 -6.3569 25 6 0.3514 -4.2541 -7.5113 26 6 0.5098 -5.5981 -7.5388 27 7 0.9747 -5.9009 -8.7560 28 7 1.0968 -4.8165 -9.4369 29 7 0.7294 -3.8051 -8.7306 30 1 0.7259 -2.8798 -9.0217 31 1 -0.3634 0.4197 0.9380 32 1 -0.3633 0.6024 -0.8325 33 1 -0.3634 -1.0223 -0.1055 34 1 1.6029 -1.7252 1.2914 35 1 1.7659 -0.1668 2.1369 36 1 3.4848 -2.1115 2.8746 37 1 4.1236 -2.8930 4.3181 38 1 5.0413 -1.7695 -0.1035 39 1 3.4984 -2.6527 -0.0050 40 1 3.6519 -1.5717 -2.1970 41 1 3.9901 0.0019 -1.4341 42 1 2.4293 -1.3745 -3.8535 43 1 2.1012 -2.8608 -2.9307 44 1 -0.2554 -2.8184 -3.7020 45 1 0.0733 -1.3321 -4.6245 46 1 1.7749 -2.5408 -5.9639 47 1 1.4456 -4.0268 -5.0410 48 1 -0.9104 -3.9844 -5.8119 49 1 -0.5817 -2.4985 -6.7351 50 1 0.3021 -6.2897 -6.7358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569523844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:31 Heat of formation + Delta-G solvation = 37.058784 kcal Electronic energy + Delta-G solvation = -28527.424952 eV Core-core repulsion = 24590.704053 eV Total energy + Delta-G solvation = -3936.720899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 8.32 seconds Orbital eigenvalues (eV) -44.26896 -41.55388 -38.91200 -36.91360 -36.37908 -34.55348 -34.14602 -33.79039 -32.91362 -30.85214 -29.90196 -28.29873 -26.23588 -25.72795 -24.54528 -23.99782 -23.41288 -22.49520 -21.90178 -21.55269 -19.97184 -19.30194 -19.11667 -17.77132 -17.19641 -17.02026 -16.99551 -16.61582 -16.03943 -15.81907 -15.47330 -15.36667 -15.25070 -15.08947 -14.78446 -14.62706 -14.36388 -13.64691 -13.57417 -13.33769 -13.27464 -13.18350 -12.98886 -12.76727 -12.64727 -12.47828 -12.39656 -12.23506 -12.11794 -12.03844 -11.93431 -11.85880 -11.78063 -11.62536 -11.58503 -11.40637 -11.18643 -10.88991 -10.15070 -10.01952 -9.57443 -9.11768 -8.37415 -5.31818 0.59720 1.54576 1.58967 1.69226 1.69462 1.83033 1.90615 2.03629 2.71835 3.40885 3.43513 3.58594 3.62894 3.76406 3.83957 3.94880 4.00824 4.02731 4.06079 4.18090 4.20078 4.27797 4.39771 4.50123 4.52954 4.55805 4.58301 4.61358 4.65350 4.71365 4.80164 4.85432 4.88826 4.94794 4.99537 5.01236 5.11303 5.13786 5.21404 5.24668 5.35637 5.39422 5.44888 5.51714 5.61710 5.68401 6.01785 6.49990 6.51967 7.09975 7.26142 7.44287 7.99998 8.12777 9.14285 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.001945 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.448271 B =14390.563587 C =15699.350380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.151 3.849 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.177 3.823 6 H 0.043 0.957 7 N -0.751 5.751 8 C -0.323 4.323 9 H 0.070 0.930 10 C -0.109 4.109 11 N -0.978 5.978 12 Si 1.128 2.872 13 H -0.285 1.285 14 H -0.297 1.297 15 H -0.272 1.272 16 C -0.140 4.140 17 C 0.117 3.883 18 N -0.610 5.610 19 C 0.507 3.493 20 O -0.567 6.567 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.044 4.044 25 C 0.012 3.988 26 C -0.064 4.064 27 N -0.307 5.307 28 N -0.119 5.119 29 N -0.376 5.376 30 H 0.462 0.538 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.356 0.644 37 H 0.243 0.757 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 4.115 -24.754 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.047 3.953 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.069 3.931 6 H 0.061 0.939 7 N -0.392 5.392 8 C -0.455 4.455 9 H 0.087 0.913 10 C -0.300 4.300 11 N -0.627 5.627 12 Si 0.954 3.046 13 H -0.212 1.212 14 H -0.224 1.224 15 H -0.197 1.197 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.343 5.343 19 C 0.298 3.702 20 O -0.448 6.448 21 C -0.179 4.179 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.083 4.083 25 C -0.123 4.123 26 C -0.222 4.222 27 N -0.173 5.173 28 N -0.098 5.098 29 N -0.099 5.099 30 H 0.311 0.689 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.188 0.812 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.125 0.875 49 H 0.116 0.884 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -9.028 3.455 -25.064 26.863 hybrid contribution -1.609 0.762 0.416 1.829 sum -10.638 4.217 -24.647 27.174 Atomic orbital electron populations 1.22021 0.92580 1.02352 1.00921 1.21160 0.95447 0.95277 0.83423 0.90380 1.22152 0.95689 1.00436 0.97954 1.20368 0.92179 0.94550 0.86052 0.93895 1.42691 1.12170 1.55127 1.29190 1.20382 0.90662 1.24920 1.09513 0.91254 1.27162 1.09472 0.97804 0.95521 1.70967 1.08063 1.40837 1.42825 0.82604 0.70376 0.76326 0.75320 1.21169 1.22371 1.19673 1.22421 1.00920 0.99238 0.95528 1.21854 0.78929 1.01388 0.98411 1.48346 1.08194 1.57627 1.20139 1.21332 0.85551 0.79500 0.83829 1.90713 1.18410 1.57941 1.77695 1.21824 1.01087 1.00641 0.94385 1.21244 0.96487 1.00495 0.95099 1.21543 0.97299 1.00571 0.95224 1.20278 0.98553 0.99226 0.90256 1.22664 1.04633 0.95458 0.89539 1.23940 1.05996 0.95100 0.97175 1.75062 1.16831 1.19769 1.05632 1.78237 1.20463 0.90334 1.20793 1.45185 1.42900 1.12060 1.09796 0.68936 0.93251 0.90935 0.93427 0.93113 0.91707 0.81215 0.94672 0.91893 0.93461 0.86771 0.90102 0.86801 0.87948 0.92019 0.91379 0.91028 0.91004 0.87524 0.88408 0.77427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 7.61 71.98 0.55 -2.65 16 2 C 0.15 3.96 3.49 44.97 0.16 4.12 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.12 -3.94 4.84 30.67 0.15 -3.79 16 5 C 0.18 6.52 2.73 45.02 0.12 6.64 16 6 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 7 N -0.75 -36.56 5.12 -322.80 -1.65 -38.22 16 8 C -0.32 -17.54 9.93 84.03 0.83 -16.70 16 9 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 10 C -0.11 -6.20 5.50 84.86 0.47 -5.74 16 11 N -0.98 -60.87 13.70 21.65 0.30 -60.57 16 12 Si 1.13 51.00 29.92 68.60 2.05 53.06 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 17 C 0.12 2.39 6.35 86.36 0.55 2.94 16 18 N -0.61 -14.01 2.97 -795.06 -2.36 -16.38 16 19 C 0.51 10.94 7.50 87.66 0.66 11.60 16 20 O -0.57 -15.33 11.55 -3.04 -0.04 -15.37 16 21 C -0.14 -1.76 4.06 29.85 0.12 -1.64 16 22 C -0.10 -0.98 4.50 30.59 0.14 -0.84 16 23 C -0.11 -0.64 5.20 30.60 0.16 -0.48 16 24 C -0.04 -0.19 5.78 29.85 0.17 -0.02 16 25 C 0.01 0.12 6.56 41.36 0.27 0.39 16 26 C -0.06 -0.92 11.99 83.73 1.00 0.08 16 27 N -0.31 -6.62 12.41 -58.26 -0.72 -7.35 16 28 N -0.12 -2.28 13.38 37.02 0.50 -1.79 16 29 N -0.38 -3.94 6.98 -47.78 -0.33 -4.27 16 30 H 0.46 1.23 8.96 -219.96 -1.97 -0.74 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 33 H 0.05 1.39 6.93 -2.38 -0.02 1.37 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.36 18.56 6.63 -92.71 -0.61 17.94 16 37 H 0.24 15.11 6.78 -92.70 -0.63 14.48 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.58 5.93 -2.39 -0.01 1.56 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.11 0.94 7.71 -2.39 -0.02 0.92 16 43 H 0.10 1.18 7.92 -2.39 -0.02 1.16 16 44 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 45 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 46 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 48 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -77.29 396.19 1.76 -75.53 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -1.50 Total: 25.54 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.52 Total: -10.19 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -4.28 Total: -128.57 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.04 Total: -15.37 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.06 kcal Total: -77.29 1.76 -75.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569523844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.586 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.32 seconds