Wall clock time and date at job start Wed Apr 1 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46771 * 2 1 4 4 N 1.46506 * 109.46894 * 119.99937 * 2 1 3 5 5 C 1.34775 * 119.99712 * 275.00153 * 4 2 1 6 6 O 1.21283 * 120.00358 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99956 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47280 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47049 * 179.97438 * 8 7 5 10 10 N 1.46494 * 109.46920 * 179.97438 * 9 8 7 11 11 C 1.34434 * 126.82403 * 125.00053 * 10 9 8 12 12 N 1.30835 * 108.07473 * 179.97438 * 11 10 9 13 13 C 1.33232 * 109.83183 * 359.97438 * 12 11 10 14 14 N 1.30709 * 108.94890 * 359.75381 * 13 12 11 15 15 C 1.52995 * 109.47110 * 239.99566 * 2 1 3 16 16 C 1.53044 * 109.45916 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31046 * 178.60150 * 16 15 2 18 18 N 1.46924 * 108.76726 * 54.66096 * 17 16 15 19 19 C 1.36939 * 120.63553 * 126.40054 * 18 17 16 20 20 H 1.08003 * 119.99594 * 331.82187 * 19 18 17 21 21 C 1.38807 * 119.99800 * 151.82316 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.07846 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.08165 * 21 19 18 24 24 H 1.48498 * 109.47072 * 60.00314 * 23 21 19 25 25 H 1.48504 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47156 * 299.99620 * 23 21 19 27 27 C 1.46926 * 118.73514 * 306.38040 * 18 17 16 28 28 C 1.53041 * 109.46033 * 59.97434 * 15 2 1 29 29 H 1.08998 * 109.47628 * 300.00146 * 1 2 3 30 30 H 1.09008 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47477 * 60.00569 * 1 2 3 32 32 H 0.96997 * 120.00213 * 94.99711 * 4 2 1 33 33 H 1.09006 * 109.47217 * 299.99449 * 7 5 4 34 34 H 1.08996 * 109.47571 * 59.99442 * 7 5 4 35 35 H 1.08997 * 109.46526 * 299.99709 * 8 7 5 36 36 H 1.08996 * 109.47170 * 59.99324 * 8 7 5 37 37 H 1.08995 * 109.47168 * 299.99873 * 9 8 7 38 38 H 1.08996 * 109.47502 * 59.99753 * 9 8 7 39 39 H 1.07999 * 125.96178 * 359.97438 * 11 10 9 40 40 H 1.08001 * 125.52794 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.46561 * 300.00341 * 15 2 1 42 42 H 1.08999 * 109.49933 * 298.57096 * 16 15 2 43 43 H 1.08997 * 109.49484 * 58.66613 * 16 15 2 44 44 H 1.08992 * 109.60355 * 294.86901 * 17 16 15 45 45 H 1.09008 * 109.69717 * 174.50409 * 17 16 15 46 46 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.58905 * 293.82054 * 27 18 17 48 48 H 1.09001 * 109.70643 * 173.46325 * 27 18 17 49 49 H 1.09002 * 109.49853 * 301.33925 * 28 15 2 50 50 H 1.09005 * 109.49640 * 61.40114 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6498 -0.7284 3.5875 8 6 2.7016 0.2549 4.7586 9 6 3.2115 -0.4664 6.0079 10 7 3.2618 0.4752 7.1290 11 6 2.6721 0.3320 8.3286 12 7 2.9563 1.3865 9.0491 13 6 3.7221 2.2206 8.3471 14 7 3.9412 1.7039 7.1666 15 6 2.0400 -0.7213 -1.2491 16 6 3.5704 -0.7217 -1.2485 17 6 4.0773 -1.4750 -2.4824 18 7 3.4749 -0.8771 -3.6817 19 6 4.2608 -0.4517 -4.7193 20 1 5.2719 -0.1221 -4.5309 21 6 3.7578 -0.4439 -6.0130 22 7 2.6779 -1.1381 -6.3035 23 14 4.6138 0.5516 -7.3418 24 1 6.0085 0.0675 -7.5020 25 1 3.8848 0.3932 -8.6259 26 1 4.6287 1.9850 -6.9542 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0002 -2.4986 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8900 32 1 2.2489 -1.6318 1.1527 33 1 1.9775 -1.5507 3.8327 34 1 3.6490 -1.1203 3.3981 35 1 3.3741 1.0768 4.5133 36 1 1.7025 0.6471 4.9483 37 1 2.5388 -1.2881 6.2530 38 1 4.2106 -0.8590 5.8186 39 1 2.0691 -0.5071 8.6427 40 1 4.1032 3.1683 8.6978 41 1 1.6766 -1.7489 -1.2490 42 1 3.9345 0.3053 -1.2740 43 1 3.9337 -1.2148 -0.3469 44 1 3.7904 -2.5242 -2.4138 45 1 5.1629 -1.3960 -2.5408 46 1 2.3267 -1.1329 -7.2077 47 1 1.5577 -1.7346 -3.7812 48 1 1.7341 -0.1832 -4.6384 49 1 0.4394 0.0206 -2.4868 50 1 1.9123 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571645489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:08 Heat of formation + Delta-G solvation = 57.461255 kcal Electronic energy + Delta-G solvation = -28491.446275 eV Core-core repulsion = 24555.610093 eV Total energy + Delta-G solvation = -3935.836181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.37900 -40.07510 -38.07835 -36.03662 -35.28014 -33.00674 -32.48961 -31.54148 -31.28678 -29.74948 -29.19309 -27.54595 -25.42813 -23.89715 -22.78632 -22.34797 -22.05064 -21.52482 -20.55193 -20.42929 -19.14573 -17.91714 -17.04641 -16.60166 -16.50791 -16.11860 -15.67356 -15.24369 -14.84843 -14.66359 -14.39320 -14.14239 -13.80541 -13.61849 -13.47062 -13.35556 -13.18741 -12.98487 -12.77847 -12.38250 -12.23996 -12.15497 -12.04354 -11.83868 -11.39101 -11.28227 -11.15090 -10.99648 -10.71422 -10.45423 -10.36846 -10.26423 -10.18271 -10.15157 -10.07563 -9.98647 -9.86341 -9.55996 -9.44768 -8.99016 -8.47377 -6.67551 -5.79941 -3.22239 1.28115 1.91370 2.56519 2.63361 3.10906 3.37758 3.43490 3.45256 3.95152 3.97278 4.30763 4.39093 4.49067 4.58334 4.67738 4.76544 4.87033 4.93929 5.02389 5.14450 5.19958 5.31648 5.37075 5.50623 5.56185 5.64198 5.70354 5.83073 5.84156 5.87938 5.93864 6.05564 6.08170 6.15822 6.23648 6.30600 6.41795 6.43552 6.51010 6.59385 6.70145 6.75279 6.82673 6.96973 7.35112 7.48408 7.64398 7.72533 7.78483 8.18065 8.44599 9.20863 9.84331 10.40951 11.28505 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.001789 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.406923 B =15646.731104 C =16078.662918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.085 0.915 4 N -0.720 5.720 5 C 0.511 3.489 6 O -0.542 6.542 7 C -0.140 4.140 8 C -0.115 4.115 9 C 0.128 3.872 10 N -0.377 5.377 11 C 0.251 3.749 12 N -0.550 5.550 13 C 0.195 3.805 14 N -0.313 5.313 15 C -0.083 4.083 16 C -0.125 4.125 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.218 0.782 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.053 0.947 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -3.172 25.673 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.103 0.897 4 N -0.371 5.371 5 C 0.297 3.703 6 O -0.419 6.419 7 C -0.180 4.180 8 C -0.154 4.154 9 C 0.006 3.994 10 N -0.168 5.168 11 C -0.046 4.046 12 N -0.277 5.277 13 C -0.108 4.108 14 N -0.140 5.140 15 C -0.102 4.102 16 C -0.164 4.164 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.046 3.954 28 C -0.174 4.174 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.235 0.765 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.805 -1.999 25.230 25.464 hybrid contribution 0.356 -0.289 -0.813 0.934 sum -2.449 -2.288 24.416 24.645 Atomic orbital electron populations 1.22194 0.95619 1.01848 1.02311 1.21165 0.93652 0.97581 0.83631 0.89715 1.46155 1.67027 1.14034 1.09863 1.20474 0.77806 0.87405 0.84615 1.90728 1.50072 1.16050 1.85051 1.21584 1.03675 0.99444 0.93334 1.21569 1.03732 0.98692 0.91391 1.21911 1.03751 0.89378 0.84347 1.50579 1.37315 1.15996 1.12920 1.26090 0.96795 0.98897 0.82796 1.70534 1.19843 1.03646 1.33680 1.26040 0.96123 1.00457 0.88144 1.78104 1.19019 0.95056 1.21858 1.21328 0.96405 0.99224 0.93290 1.22037 0.94523 1.01347 0.98531 1.20886 0.96537 0.93857 0.86797 1.44034 1.02033 1.69871 1.15527 1.19138 0.97246 1.36229 0.85607 0.91849 1.25033 0.98425 0.99106 0.97051 1.70018 1.24581 1.40849 1.19344 0.86380 0.78928 0.80430 0.81096 1.20911 1.21628 1.21025 1.20758 0.83280 0.96777 0.94570 1.22274 0.98847 1.00108 0.96164 0.92859 0.92707 0.90995 0.76714 0.88632 0.88383 0.89418 0.90525 0.87883 0.89011 0.76547 0.76712 0.91536 0.92394 0.93459 0.96706 0.92979 0.93607 0.96526 0.89483 0.92814 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.14 1.91 2.16 -67.93 -0.15 1.76 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.72 -7.60 4.36 -53.81 -0.23 -7.83 16 5 C 0.51 5.69 7.79 -10.99 -0.09 5.60 16 6 O -0.54 -8.55 15.64 5.55 0.09 -8.46 16 7 C -0.14 -0.86 5.70 -27.88 -0.16 -1.02 16 8 C -0.12 -0.86 4.72 -26.73 -0.13 -0.99 16 9 C 0.13 0.61 6.55 -4.04 -0.03 0.58 16 10 N -0.38 -2.97 3.69 -62.64 -0.23 -3.20 16 11 C 0.25 1.73 12.63 -90.65 -1.14 0.58 16 12 N -0.55 -5.26 11.19 -15.83 -0.18 -5.44 16 13 C 0.20 1.82 13.03 -91.82 -1.20 0.63 16 14 N -0.31 -3.33 12.58 29.29 0.37 -2.96 16 15 C -0.08 -1.26 1.79 -90.58 -0.16 -1.42 16 16 C -0.13 -2.03 5.22 -26.61 -0.14 -2.17 16 17 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16 19 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 20 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 23 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 28 C -0.13 -2.42 5.04 -26.61 -0.13 -2.55 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 32 H 0.40 3.20 8.39 -40.82 -0.34 2.86 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.10 0.13 8.09 -51.93 -0.42 -0.29 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.22 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.63 7.41 -51.93 -0.38 0.25 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 49 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -35.76 400.78 -10.72 -46.48 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.39 Total: -0.08 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.25 Total: -0.84 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.17 Total: -59.74 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.76 -10.72 -46.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571645489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.944 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds