Wall clock time and date at job start Wed Apr 1 2020 01:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46771 * 2 1 4 4 N 1.46506 * 109.46894 * 119.99937 * 2 1 3 5 5 C 1.34775 * 119.99712 * 275.00153 * 4 2 1 6 6 O 1.21283 * 120.00358 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99956 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47280 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47049 * 179.97438 * 8 7 5 10 10 N 1.46494 * 109.46920 * 179.97438 * 9 8 7 11 11 C 1.34434 * 126.82403 * 125.00053 * 10 9 8 12 12 N 1.30835 * 108.07473 * 179.97438 * 11 10 9 13 13 C 1.33232 * 109.83183 * 359.97438 * 12 11 10 14 14 N 1.30709 * 108.94890 * 359.75381 * 13 12 11 15 15 C 1.52995 * 109.47110 * 239.99566 * 2 1 3 16 16 C 1.53044 * 109.45916 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31046 * 178.60150 * 16 15 2 18 18 N 1.46924 * 108.76726 * 54.66096 * 17 16 15 19 19 C 1.36939 * 120.63553 * 126.40054 * 18 17 16 20 20 H 1.08003 * 119.99594 * 331.82187 * 19 18 17 21 21 C 1.38807 * 119.99800 * 151.82316 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.07846 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.08165 * 21 19 18 24 24 H 1.48498 * 109.47072 * 60.00314 * 23 21 19 25 25 H 1.48504 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47156 * 299.99620 * 23 21 19 27 27 C 1.46926 * 118.73514 * 306.38040 * 18 17 16 28 28 C 1.53041 * 109.46033 * 59.97434 * 15 2 1 29 29 H 1.08998 * 109.47628 * 300.00146 * 1 2 3 30 30 H 1.09008 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47477 * 60.00569 * 1 2 3 32 32 H 0.96997 * 120.00213 * 94.99711 * 4 2 1 33 33 H 1.09006 * 109.47217 * 299.99449 * 7 5 4 34 34 H 1.08996 * 109.47571 * 59.99442 * 7 5 4 35 35 H 1.08997 * 109.46526 * 299.99709 * 8 7 5 36 36 H 1.08996 * 109.47170 * 59.99324 * 8 7 5 37 37 H 1.08995 * 109.47168 * 299.99873 * 9 8 7 38 38 H 1.08996 * 109.47502 * 59.99753 * 9 8 7 39 39 H 1.07999 * 125.96178 * 359.97438 * 11 10 9 40 40 H 1.08001 * 125.52794 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.46561 * 300.00341 * 15 2 1 42 42 H 1.08999 * 109.49933 * 298.57096 * 16 15 2 43 43 H 1.08997 * 109.49484 * 58.66613 * 16 15 2 44 44 H 1.08992 * 109.60355 * 294.86901 * 17 16 15 45 45 H 1.09008 * 109.69717 * 174.50409 * 17 16 15 46 46 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.58905 * 293.82054 * 27 18 17 48 48 H 1.09001 * 109.70643 * 173.46325 * 27 18 17 49 49 H 1.09002 * 109.49853 * 301.33925 * 28 15 2 50 50 H 1.09005 * 109.49640 * 61.40114 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6498 -0.7284 3.5875 8 6 2.7016 0.2549 4.7586 9 6 3.2115 -0.4664 6.0079 10 7 3.2618 0.4752 7.1290 11 6 2.6721 0.3320 8.3286 12 7 2.9563 1.3865 9.0491 13 6 3.7221 2.2206 8.3471 14 7 3.9412 1.7039 7.1666 15 6 2.0400 -0.7213 -1.2491 16 6 3.5704 -0.7217 -1.2485 17 6 4.0773 -1.4750 -2.4824 18 7 3.4749 -0.8771 -3.6817 19 6 4.2608 -0.4517 -4.7193 20 1 5.2719 -0.1221 -4.5309 21 6 3.7578 -0.4439 -6.0130 22 7 2.6779 -1.1381 -6.3035 23 14 4.6138 0.5516 -7.3418 24 1 6.0085 0.0675 -7.5020 25 1 3.8848 0.3932 -8.6259 26 1 4.6287 1.9850 -6.9542 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0002 -2.4986 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8900 32 1 2.2489 -1.6318 1.1527 33 1 1.9775 -1.5507 3.8327 34 1 3.6490 -1.1203 3.3981 35 1 3.3741 1.0768 4.5133 36 1 1.7025 0.6471 4.9483 37 1 2.5388 -1.2881 6.2530 38 1 4.2106 -0.8590 5.8186 39 1 2.0691 -0.5071 8.6427 40 1 4.1032 3.1683 8.6978 41 1 1.6766 -1.7489 -1.2490 42 1 3.9345 0.3053 -1.2740 43 1 3.9337 -1.2148 -0.3469 44 1 3.7904 -2.5242 -2.4138 45 1 5.1629 -1.3960 -2.5408 46 1 2.3267 -1.1329 -7.2077 47 1 1.5577 -1.7346 -3.7812 48 1 1.7341 -0.1832 -4.6384 49 1 0.4394 0.0206 -2.4868 50 1 1.9123 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571645489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:06 Heat of formation + Delta-G solvation = 35.536132 kcal Electronic energy + Delta-G solvation = -28492.397019 eV Core-core repulsion = 24555.610093 eV Total energy + Delta-G solvation = -3936.786926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.93874 -41.04822 -39.45213 -36.95942 -36.32877 -34.49367 -33.35311 -32.64130 -32.13616 -31.40801 -30.54071 -28.12788 -27.14564 -24.95506 -23.94875 -23.61089 -22.87520 -22.24549 -21.69910 -21.36190 -20.60945 -18.80340 -18.43545 -17.61879 -17.16136 -17.05393 -16.73769 -16.37491 -15.86558 -15.71500 -15.37936 -15.32130 -15.03824 -14.86944 -14.73164 -14.60882 -14.33411 -14.05247 -13.77338 -13.54886 -13.40432 -13.21412 -12.90005 -12.77988 -12.72932 -12.62267 -12.54380 -12.38268 -12.17932 -12.02849 -11.81294 -11.79468 -11.48463 -11.24892 -11.07705 -10.99068 -10.80931 -10.76823 -10.57174 -10.52172 -10.00032 -8.65917 -7.87744 -5.32232 0.74106 1.44779 1.47398 1.48418 1.53793 1.73630 2.03704 2.28851 2.50422 3.26319 3.52949 3.56319 3.68810 3.72252 3.79125 3.91465 3.97730 4.07698 4.15601 4.17458 4.35468 4.41615 4.46831 4.52923 4.56965 4.58046 4.60984 4.70935 4.76028 4.83019 4.90762 5.00940 5.03723 5.04433 5.13639 5.20072 5.25426 5.30260 5.33818 5.37296 5.45322 5.49115 5.54538 5.60930 5.65802 5.80746 5.99730 6.39815 6.67309 7.15352 7.16015 7.37602 7.88695 8.38706 9.17896 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.001789 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.406923 B =15646.731104 C =16078.662918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.054 0.946 4 N -0.710 5.710 5 C 0.505 3.495 6 O -0.596 6.596 7 C -0.126 4.126 8 C -0.108 4.108 9 C 0.127 3.873 10 N -0.383 5.383 11 C 0.259 3.741 12 N -0.584 5.584 13 C 0.186 3.814 14 N -0.358 5.358 15 C -0.072 4.072 16 C -0.112 4.112 17 C 0.141 3.859 18 N -0.612 5.612 19 C -0.264 4.264 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.178 3.822 28 C -0.123 4.123 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.416 0.584 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.151 0.849 38 H 0.104 0.896 39 H 0.265 0.735 40 H 0.233 0.767 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.047 0.953 46 H 0.250 0.750 47 H 0.002 0.998 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -5.491 27.891 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.073 0.927 4 N -0.362 5.362 5 C 0.293 3.707 6 O -0.477 6.477 7 C -0.166 4.166 8 C -0.147 4.147 9 C 0.007 3.993 10 N -0.173 5.173 11 C -0.037 4.037 12 N -0.312 5.312 13 C -0.116 4.116 14 N -0.186 5.186 15 C -0.091 4.091 16 C -0.151 4.151 17 C 0.016 3.984 18 N -0.336 5.336 19 C -0.394 4.394 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.052 3.948 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.169 0.831 38 H 0.122 0.878 39 H 0.280 0.720 40 H 0.249 0.751 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.020 0.980 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.907 -4.365 27.467 27.963 hybrid contribution 0.393 0.403 -1.487 1.590 sum -2.514 -3.962 25.979 26.400 Atomic orbital electron populations 1.22131 0.94652 1.02872 1.01749 1.20770 0.94276 0.95977 0.83977 0.92733 1.46003 1.66614 1.14734 1.08850 1.21403 0.76601 0.86893 0.85794 1.90719 1.52382 1.18711 1.85897 1.21614 1.05863 0.99321 0.89825 1.21417 1.01466 0.98269 0.93540 1.22196 1.05556 0.89272 0.82278 1.50764 1.36998 1.15537 1.14029 1.26991 0.95644 0.99068 0.81948 1.70533 1.20908 1.04850 1.34916 1.26469 0.95997 1.01197 0.87963 1.78021 1.20843 0.96995 1.22772 1.21179 0.95538 0.99756 0.92589 1.21887 0.95196 0.99908 0.98116 1.21068 0.96315 0.94466 0.86601 1.44318 1.02466 1.70576 1.16255 1.19439 0.97497 1.35820 0.86669 0.92108 1.25736 0.99389 1.00312 0.99024 1.70158 1.25986 1.42284 1.19371 0.85417 0.78143 0.78929 0.78422 1.20092 1.21840 1.20860 1.20571 0.82916 0.95896 0.95404 1.22078 1.00080 0.98681 0.95420 0.93512 0.90793 0.91537 0.74643 0.84354 0.85702 0.93599 0.92745 0.83092 0.87818 0.71959 0.75107 0.89903 0.94405 0.89584 0.95969 0.93416 0.94114 0.97961 0.93317 0.90710 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.13 71.98 0.66 -2.90 16 2 C 0.16 3.86 2.16 44.99 0.10 3.96 16 3 H 0.05 1.73 7.58 -2.39 -0.02 1.71 16 4 N -0.71 -12.79 4.36 -442.53 -1.93 -14.73 16 5 C 0.50 10.14 7.79 87.66 0.68 10.82 16 6 O -0.60 -18.84 15.64 -3.04 -0.05 -18.88 16 7 C -0.13 -1.07 5.70 29.85 0.17 -0.90 16 8 C -0.11 -1.43 4.72 30.60 0.14 -1.28 16 9 C 0.13 0.78 6.55 86.38 0.57 1.34 16 10 N -0.38 -5.32 3.69 -352.08 -1.30 -6.62 16 11 C 0.26 2.92 12.63 180.36 2.28 5.20 16 12 N -0.58 -10.61 11.19 -204.00 -2.28 -12.89 16 13 C 0.19 3.51 13.03 180.77 2.36 5.86 16 14 N -0.36 -7.63 12.58 -61.25 -0.77 -8.40 16 15 C -0.07 -2.02 1.79 -10.77 -0.02 -2.04 16 16 C -0.11 -3.42 5.22 30.67 0.16 -3.26 16 17 C 0.14 5.52 6.52 86.36 0.56 6.08 16 18 N -0.61 -30.34 2.99 -699.10 -2.09 -32.43 16 19 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 20 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 22 N -0.93 -54.88 11.19 21.65 0.24 -54.64 16 23 Si 0.96 45.24 29.59 68.60 2.03 47.27 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C 0.18 8.36 5.30 86.36 0.46 8.82 16 28 C -0.12 -4.41 5.04 30.67 0.15 -4.26 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 1.58 6.40 -2.39 -0.02 1.56 16 32 H 0.42 4.69 8.39 -92.71 -0.78 3.91 16 33 H 0.14 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.15 -0.51 8.09 -2.39 -0.02 -0.53 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.26 -0.08 8.06 -2.91 -0.02 -0.10 16 40 H 0.23 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.98 7.41 -2.39 -0.02 1.96 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 46 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 49 H 0.07 2.35 6.36 -2.39 -0.02 2.33 16 50 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -84.34 400.78 3.49 -80.85 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.15 Total: 9.16 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 9.49 Total: 11.30 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -8.13 Total: -129.71 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -84.34 3.49 -80.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571645489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.385 kcal (2) G-P(sol) polarization free energy of solvation -84.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds