Wall clock time and date at job start Wed Apr 1 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46778 * 2 1 4 4 C 1.52995 * 109.47183 * 239.99775 * 2 1 3 5 5 C 1.50698 * 109.47152 * 175.00017 * 4 2 1 6 6 C 1.39877 * 126.03922 * 269.69673 * 5 4 2 7 7 N 1.30842 * 108.20038 * 179.81623 * 6 5 4 8 8 N 1.40083 * 108.20375 * 0.43352 * 7 6 5 9 9 C 1.46499 * 126.03705 * 179.69723 * 8 7 6 10 10 C 1.34952 * 107.92861 * 359.72339 * 8 7 6 11 11 N 1.46503 * 109.46812 * 119.99633 * 2 1 3 12 12 C 1.34773 * 120.00222 * 274.99987 * 11 2 1 13 13 O 1.21591 * 120.00021 * 0.02562 * 12 11 2 14 14 N 1.34769 * 119.99919 * 179.97438 * 12 11 2 15 15 C 1.46509 * 119.99850 * 179.97438 * 14 12 11 16 16 C 1.53350 * 109.41915 * 275.13242 * 15 14 12 17 17 C 1.53198 * 109.14641 * 178.67654 * 16 15 14 18 18 N 1.46925 * 108.89335 * 54.57862 * 17 16 15 19 19 C 1.36931 * 120.63201 * 126.29969 * 18 17 16 20 20 H 1.08005 * 119.99889 * 331.83485 * 19 18 17 21 21 C 1.38813 * 120.00220 * 151.82683 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.08678 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.08567 * 21 19 18 24 24 H 1.48496 * 109.47191 * 90.00149 * 23 21 19 25 25 H 1.48501 * 109.46981 * 210.00196 * 23 21 19 26 26 H 1.48500 * 109.46794 * 329.99854 * 23 21 19 27 27 C 1.46925 * 118.73856 * 306.31536 * 18 17 16 28 28 C 1.53044 * 109.45681 * 155.00448 * 15 14 12 29 29 H 1.08999 * 109.46545 * 60.00223 * 1 2 3 30 30 H 1.08996 * 109.46778 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47067 * 300.00081 * 1 2 3 32 32 H 1.08997 * 109.47101 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46964 * 55.00018 * 4 2 1 34 34 H 1.08002 * 125.89547 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.47545 * 270.02883 * 9 8 7 36 36 H 1.09007 * 109.47014 * 30.02696 * 9 8 7 37 37 H 1.08999 * 109.47125 * 150.02586 * 9 8 7 38 38 H 1.07999 * 126.12542 * 180.02562 * 10 8 7 39 39 H 0.97001 * 119.99351 * 95.00672 * 11 2 1 40 40 H 0.97003 * 120.00205 * 0.02562 * 14 12 11 41 41 H 1.08997 * 109.45697 * 35.03653 * 15 14 12 42 42 H 1.08996 * 109.68537 * 58.71419 * 16 15 14 43 43 H 1.09000 * 109.47180 * 298.51335 * 16 15 14 44 44 H 1.08997 * 109.58387 * 294.71773 * 17 16 15 45 45 H 1.08993 * 109.58533 * 174.43928 * 17 16 15 46 46 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58495 * 173.39541 * 27 18 17 48 48 H 1.09000 * 109.58924 * 293.68296 * 27 18 17 49 49 H 1.08996 * 109.49900 * 61.43623 * 28 15 14 50 50 H 1.09005 * 109.49524 * 301.33765 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 6 4.2692 0.3993 -1.9443 7 7 5.5435 0.1505 -1.7818 8 7 5.6675 -1.0370 -1.0491 9 6 6.9238 -1.6779 -0.6526 10 6 4.4253 -1.4868 -0.7736 11 7 2.0184 -0.6906 1.1963 12 6 2.1471 -0.0182 2.3572 13 8 1.8575 1.1615 2.4119 14 7 2.5957 -0.6536 3.4577 15 6 2.7362 0.0774 4.7196 16 6 4.0957 0.7863 4.7496 17 6 4.2222 1.5753 6.0566 18 7 3.9894 0.6651 7.1862 19 6 4.9055 0.5610 8.1987 20 1 5.9503 0.7525 8.0033 21 6 4.4913 0.2095 9.4761 22 7 3.2197 0.2994 9.8036 23 14 5.7387 -0.3911 10.7303 24 1 6.2726 0.7670 11.4910 25 1 5.0822 -1.3383 11.6668 26 1 6.8526 -1.0794 10.0299 27 6 2.7551 -0.1316 7.2087 28 6 2.6426 -0.9038 5.8903 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8511 1.2435 -2.4724 35 1 7.2365 -2.3760 -1.4291 36 1 7.6927 -0.9172 -0.5168 37 1 6.7770 -2.2171 0.2832 38 1 4.1802 -2.3820 -0.2213 39 1 2.2491 -1.6317 1.1526 40 1 2.8264 -1.5948 3.4142 41 1 1.9398 0.8171 4.8012 42 1 4.1724 1.4692 3.9035 43 1 4.8931 0.0453 4.6932 44 1 3.4823 2.3754 6.0735 45 1 5.2227 2.0013 6.1308 46 1 2.9302 0.0534 10.6961 47 1 2.7886 -0.8338 8.0417 48 1 1.8957 0.5291 7.3221 49 1 3.4537 -1.6289 5.8231 50 1 1.6852 -1.4236 5.8537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631245818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:12 Heat of formation + Delta-G solvation = 38.280208 kcal Electronic energy + Delta-G solvation = -29497.816534 eV Core-core repulsion = 25561.148600 eV Total energy + Delta-G solvation = -3936.667934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -42.10594 -41.11171 -39.19014 -37.22960 -35.85165 -34.31037 -33.92078 -32.65729 -31.72877 -31.29796 -30.48090 -28.45751 -26.88578 -26.14099 -24.12504 -23.78922 -22.48615 -22.12027 -21.45790 -21.04907 -21.01737 -19.35318 -18.56585 -17.71753 -17.34993 -16.81724 -16.42996 -16.20291 -15.93698 -15.57393 -15.38171 -15.28382 -15.14695 -14.91111 -14.77180 -14.35515 -14.10998 -13.99703 -13.93315 -13.54718 -13.35952 -13.21699 -13.03889 -12.97351 -12.81405 -12.60749 -12.51405 -12.39729 -12.22290 -12.02181 -11.88413 -11.85137 -11.54209 -11.42632 -11.34293 -11.10659 -10.55972 -10.33448 -10.20105 -9.65537 -9.20138 -8.71216 -7.88055 -5.33982 1.03431 1.48482 1.49252 1.59649 1.75254 1.81950 1.91228 2.31098 2.51945 3.26809 3.41720 3.66351 3.70613 3.91263 4.03305 4.06890 4.12381 4.26333 4.34079 4.35017 4.42117 4.44171 4.45950 4.63875 4.65034 4.68810 4.76191 4.82513 4.85336 4.94431 4.99412 5.00563 5.05812 5.06754 5.16167 5.20662 5.27667 5.32910 5.45115 5.47072 5.64020 5.66519 5.70924 5.76204 5.80134 6.17008 6.22018 6.38734 6.80211 7.14180 7.27262 7.75746 7.83254 8.36872 9.19210 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002619 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.365969 B =10690.324993 C =11925.302801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.166 3.834 3 H 0.052 0.948 4 C -0.032 4.032 5 C -0.245 4.245 6 C 0.037 3.963 7 N -0.346 5.346 8 N -0.385 5.385 9 C 0.093 3.907 10 C 0.060 3.940 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.641 6.641 14 N -0.728 5.728 15 C 0.184 3.816 16 C -0.120 4.120 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.266 4.266 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.179 3.821 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.192 0.808 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.203 0.797 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.004 0.996 45 H 0.054 0.946 46 H 0.251 0.749 47 H 0.064 0.936 48 H -0.007 1.007 49 H 0.071 0.929 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -11.468 -25.906 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 H 0.071 0.929 4 C -0.071 4.071 5 C -0.256 4.256 6 C -0.148 4.148 7 N -0.168 5.168 8 N -0.167 5.167 9 C -0.047 4.047 10 C -0.086 4.086 11 N -0.376 5.376 12 C 0.399 3.601 13 O -0.522 6.522 14 N -0.383 5.383 15 C 0.078 3.922 16 C -0.160 4.160 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.193 1.193 27 C 0.053 3.947 28 C -0.165 4.165 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.209 0.791 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.219 0.781 39 H 0.244 0.756 40 H 0.245 0.755 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.022 0.978 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.011 0.989 49 H 0.090 0.910 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.010 -10.119 -25.923 27.828 hybrid contribution -0.040 -0.600 1.316 1.447 sum -0.030 -10.719 -24.608 26.841 Atomic orbital electron populations 1.22159 0.94876 1.02872 1.01798 1.20835 0.93551 0.96187 0.83367 0.92927 1.20164 0.88177 1.02385 0.96364 1.20239 0.97341 0.98506 1.09557 1.24186 0.90333 1.00297 1.00013 1.77292 1.20867 1.01570 1.17080 1.48747 1.07295 1.18439 1.42202 1.22113 0.82242 0.97981 1.02380 1.22857 0.83970 1.01152 1.00645 1.44989 1.71042 1.13846 1.07738 1.16200 0.77911 0.84687 0.81308 1.90892 1.59211 1.16862 1.85280 1.45088 1.70693 1.14067 1.08427 1.20474 0.96275 0.93518 0.81965 1.22196 0.97564 0.99341 0.96939 1.20942 0.98336 0.91460 0.87417 1.44339 1.21550 1.45297 1.21994 1.19509 0.89184 1.42678 0.88199 0.91596 1.25831 0.97846 1.02233 0.98524 1.70188 1.16161 1.51970 1.19794 0.85250 0.78621 0.77742 0.78637 1.21448 1.21626 1.19275 1.20571 0.86369 0.93005 0.94782 1.22234 1.02106 0.97841 0.94309 0.90014 0.90691 0.95345 0.88278 0.87966 0.79123 0.89251 0.90181 0.87233 0.78061 0.75599 0.75531 0.93078 0.93103 0.91676 0.97798 0.92699 0.93960 0.91734 0.98933 0.90992 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.99 0.68 -1.78 16 2 C 0.17 2.79 2.56 44.99 0.12 2.91 16 3 H 0.05 1.29 7.58 -2.39 -0.02 1.27 16 4 C -0.03 -0.32 5.24 29.85 0.16 -0.16 16 5 C -0.24 -3.74 5.10 -20.14 -0.10 -3.84 16 6 C 0.04 0.73 11.96 85.24 1.02 1.75 16 7 N -0.35 -8.26 12.58 -57.01 -0.72 -8.98 16 8 N -0.38 -6.93 4.01 -369.56 -1.48 -8.42 16 9 C 0.09 1.01 11.47 127.77 1.47 2.47 16 10 C 0.06 0.83 11.31 83.54 0.94 1.77 16 11 N -0.72 -12.94 4.71 -457.81 -2.16 -15.10 16 12 C 0.70 19.98 8.49 179.06 1.52 21.50 16 13 O -0.64 -25.36 15.67 -4.00 -0.06 -25.42 16 14 N -0.73 -19.04 5.08 -457.17 -2.32 -21.37 16 15 C 0.18 6.40 2.42 45.12 0.11 6.51 16 16 C -0.12 -4.49 5.68 30.78 0.17 -4.32 16 17 C 0.14 6.53 6.50 86.36 0.56 7.09 16 18 N -0.61 -31.21 2.99 -699.09 -2.09 -33.30 16 19 C -0.27 -14.72 9.58 84.03 0.81 -13.92 16 20 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 21 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 22 N -0.94 -55.30 11.20 21.65 0.24 -55.05 16 23 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.18 8.61 5.30 86.36 0.46 9.07 16 28 C -0.13 -4.44 5.55 30.68 0.17 -4.27 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.41 4.25 8.62 -92.71 -0.80 3.45 16 40 H 0.41 7.53 8.62 -92.71 -0.80 6.73 16 41 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.05 2.42 7.93 -2.39 -0.02 2.40 16 46 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -80.73 405.41 1.28 -79.45 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.66 Total: 19.27 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 8.50 Total: 22.48 kcal Atomic # 7 Polarization: -133.69 SS G_CDS: -8.53 Total: -142.22 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -80.73 1.28 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631245818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.733 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds