Wall clock time and date at job start Wed Apr 1 2020 01:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46768 * 2 1 4 4 C 1.53005 * 109.46704 * 119.99514 * 2 1 3 5 5 C 1.50703 * 109.46796 * 185.00118 * 4 2 1 6 6 C 1.39866 * 126.03751 * 269.69199 * 5 4 2 7 7 N 1.30837 * 108.20230 * 179.81860 * 6 5 4 8 8 N 1.40088 * 108.20363 * 0.43888 * 7 6 5 9 9 C 1.46499 * 126.03740 * 179.69576 * 8 7 6 10 10 C 1.34946 * 107.92226 * 359.71852 * 8 7 6 11 11 N 1.46499 * 109.47320 * 239.99519 * 2 1 3 12 12 C 1.34768 * 120.00118 * 85.00106 * 11 2 1 13 13 O 1.21587 * 120.00111 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00149 * 179.97438 * 12 11 2 15 15 C 1.46505 * 119.99968 * 180.02562 * 14 12 11 16 16 C 1.53044 * 109.46115 * 275.02599 * 15 14 12 17 17 C 1.53185 * 109.31204 * 178.60315 * 16 15 14 18 18 N 1.46926 * 108.76663 * 54.65761 * 17 16 15 19 19 C 1.36937 * 120.63056 * 126.36586 * 18 17 16 20 20 H 1.08001 * 119.99718 * 208.02345 * 19 18 17 21 21 C 1.38808 * 120.00319 * 28.01719 * 19 18 17 22 22 N 1.31620 * 119.99681 * 17.52600 * 21 19 18 23 23 Si 1.86796 * 120.00183 * 197.52950 * 21 19 18 24 24 H 1.48501 * 109.47456 * 94.06536 * 23 21 19 25 25 H 1.48496 * 109.47137 * 214.06652 * 23 21 19 26 26 H 1.48504 * 109.47225 * 334.06556 * 23 21 19 27 27 C 1.46928 * 118.73578 * 306.38024 * 18 17 16 28 28 C 1.53041 * 109.45883 * 154.97390 * 15 14 12 29 29 H 1.08992 * 109.47196 * 300.00518 * 1 2 3 30 30 H 1.09006 * 109.46495 * 60.00472 * 1 2 3 31 31 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47071 * 65.00349 * 4 2 1 33 33 H 1.09003 * 109.47218 * 305.00055 * 4 2 1 34 34 H 1.08006 * 125.89930 * 359.97438 * 6 5 4 35 35 H 1.09001 * 109.47314 * 270.02130 * 9 8 7 36 36 H 1.08998 * 109.47219 * 30.02489 * 9 8 7 37 37 H 1.09005 * 109.46621 * 150.02491 * 9 8 7 38 38 H 1.08004 * 126.12835 * 180.02562 * 10 8 7 39 39 H 0.96998 * 119.99783 * 265.00645 * 11 2 1 40 40 H 0.96993 * 120.00220 * 0.02562 * 14 12 11 41 41 H 1.08993 * 109.45968 * 34.99893 * 15 14 12 42 42 H 1.09004 * 109.49686 * 298.57083 * 16 15 14 43 43 H 1.08999 * 109.49309 * 58.66018 * 16 15 14 44 44 H 1.09002 * 109.60061 * 294.86872 * 17 16 15 45 45 H 1.09001 * 109.70475 * 174.51142 * 17 16 15 46 46 H 0.97008 * 119.99418 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.59098 * 293.82267 * 27 18 17 48 48 H 1.09000 * 109.69762 * 173.46437 * 27 18 17 49 49 H 1.09002 * 109.49931 * 301.33889 * 28 15 14 50 50 H 1.09003 * 109.49976 * 61.43465 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3129 6 6 4.4549 -1.5193 0.7610 7 7 5.6633 -1.0883 1.0180 8 7 5.5571 0.1006 1.7513 9 6 6.6731 0.9089 2.2488 10 6 4.2454 0.3694 1.9189 11 7 2.0184 -0.6907 -1.1961 12 6 2.1472 -0.0185 -2.3570 13 8 1.8576 1.1611 -2.4119 14 7 2.5970 -0.6538 -3.4573 15 6 2.7375 0.0771 -4.7192 16 6 1.3948 0.0895 -5.4535 17 6 1.5366 0.8842 -6.7554 18 7 2.6456 0.3187 -7.5358 19 6 2.4575 -0.0692 -8.8356 20 1 3.0650 -0.8561 -9.2575 21 6 1.4859 0.5488 -9.6107 22 7 0.9886 1.7098 -9.2401 23 14 0.8841 -0.2671 -11.1796 24 1 -0.3335 -1.0652 -10.8869 25 1 0.5625 0.7749 -12.1875 26 1 1.9449 -1.1598 -11.7116 27 6 3.9602 0.1771 -6.8951 28 6 3.7911 -0.6094 -5.5914 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7714 1.2058 33 1 1.6053 -0.2616 2.1371 34 1 4.2056 -2.4170 0.2147 35 1 6.9509 0.5697 3.2467 36 1 7.5259 0.8027 1.5783 37 1 6.3726 1.9559 2.2914 38 1 3.8312 1.2184 2.4425 39 1 2.2491 -1.6319 -1.1524 40 1 2.8277 -1.5949 -3.4137 41 1 3.0480 1.1013 -4.5129 42 1 1.0956 -0.9334 -5.6821 43 1 0.6393 0.5575 -4.8222 44 1 1.7471 1.9286 -6.5252 45 1 0.6131 0.8158 -7.3302 46 1 0.3094 2.1415 -9.7817 47 1 4.3683 1.1639 -6.6762 48 1 4.6372 -0.3591 -7.5601 49 1 4.7415 -0.6390 -5.0585 50 1 3.4692 -1.6257 -5.8188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631245819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:23 Heat of formation + Delta-G solvation = 63.413346 kcal Electronic energy + Delta-G solvation = -29305.125933 eV Core-core repulsion = 25369.547854 eV Total energy + Delta-G solvation = -3935.578079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.46619 -39.86520 -37.63339 -36.15665 -34.22445 -33.53415 -32.40660 -31.57514 -30.32796 -29.82124 -28.99508 -27.96779 -25.56500 -24.91692 -22.52180 -22.13018 -21.48666 -21.27649 -20.38740 -20.29560 -19.35312 -18.00559 -17.07002 -16.71786 -16.29428 -15.68468 -15.02485 -14.92815 -14.76736 -14.58705 -14.21073 -14.01359 -13.64660 -13.51333 -13.42697 -13.34748 -13.01719 -12.92973 -12.80970 -12.55375 -12.41228 -12.22315 -12.12989 -11.72265 -11.41261 -11.13484 -11.06355 -10.83661 -10.74913 -10.70483 -10.31040 -10.16392 -10.01244 -9.84109 -9.68612 -9.67100 -9.46851 -9.01517 -8.58942 -8.50891 -8.30085 -6.63464 -5.73832 -3.16531 1.64745 2.27044 2.55781 2.96772 3.41005 3.47699 3.49247 3.56100 4.21789 4.46119 4.53470 4.55852 4.76005 4.77951 4.81337 4.89752 5.05003 5.09098 5.30827 5.37821 5.41949 5.46437 5.53292 5.53734 5.62370 5.66737 5.73641 5.79385 5.93012 6.02258 6.17652 6.20340 6.31800 6.40168 6.47127 6.55246 6.68195 6.69638 6.72521 6.74300 6.85673 6.99600 7.05937 7.26024 7.45160 7.45755 7.74677 7.84451 8.32033 8.49990 8.94699 9.25864 9.89389 10.46511 11.34639 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002333 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.626002 B =12001.067527 C =12784.025262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.085 0.915 4 C -0.047 4.047 5 C -0.232 4.232 6 C 0.056 3.944 7 N -0.297 5.297 8 N -0.377 5.377 9 C 0.102 3.898 10 C 0.056 3.944 11 N -0.741 5.741 12 C 0.703 3.297 13 O -0.592 6.592 14 N -0.741 5.741 15 C 0.170 3.830 16 C -0.145 4.145 17 C 0.174 3.826 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.138 4.138 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.390 0.610 40 H 0.388 0.612 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 -5.838 26.965 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.103 0.897 4 C -0.086 4.086 5 C -0.243 4.243 6 C -0.131 4.131 7 N -0.118 5.118 8 N -0.159 5.159 9 C -0.040 4.040 10 C -0.090 4.090 11 N -0.397 5.397 12 C 0.403 3.597 13 O -0.470 6.470 14 N -0.395 5.395 15 C 0.066 3.934 16 C -0.186 4.186 17 C 0.047 3.953 18 N -0.315 5.315 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.223 0.777 40 H 0.221 0.779 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.265 -4.717 26.717 27.844 hybrid contribution -0.997 -1.059 -0.638 1.588 sum 5.268 -5.776 26.079 27.226 Atomic orbital electron populations 1.22226 0.95627 1.01948 1.02595 1.20753 0.93100 0.97237 0.82795 0.89730 1.20216 0.89535 1.01393 0.97459 1.19970 0.96450 0.98573 1.09340 1.23701 0.89693 0.99963 0.99704 1.77365 1.22619 0.97665 1.14164 1.48424 1.05403 1.19507 1.42582 1.21848 0.88230 0.93873 1.00009 1.22318 0.84095 1.00622 1.01921 1.45144 1.72374 1.13193 1.09009 1.15997 0.78271 0.85183 0.80220 1.90911 1.56968 1.14469 1.84622 1.45502 1.70821 1.13436 1.09697 1.20852 0.96366 0.95763 0.80390 1.22556 0.95730 1.01324 0.98957 1.20754 0.93497 0.92942 0.88082 1.44111 1.03818 1.73697 1.09914 1.19192 1.18567 1.13046 0.87457 0.91651 1.25059 1.01612 0.95268 0.97767 1.70055 1.30811 1.14002 1.39634 0.86280 0.78945 0.78576 0.82987 1.21516 1.21815 1.20417 1.20829 0.89226 0.96345 0.91416 1.22335 0.97028 1.00498 0.97958 0.91962 0.91729 0.92652 0.90670 0.89917 0.80512 0.90844 0.89287 0.89478 0.81122 0.77716 0.77900 0.90300 0.92880 0.92871 0.96202 0.89389 0.93632 0.96271 0.92422 0.92772 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.48 37.16 0.35 -1.18 16 2 C 0.17 1.61 2.56 -67.92 -0.17 1.44 16 3 H 0.08 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.05 -0.32 5.24 -27.88 -0.15 -0.46 16 5 C -0.23 -2.00 5.09 -105.06 -0.53 -2.53 16 6 C 0.06 0.54 11.92 -17.37 -0.21 0.33 16 7 N -0.30 -3.44 12.58 30.62 0.39 -3.06 16 8 N -0.38 -3.55 4.01 -68.16 -0.27 -3.82 16 9 C 0.10 0.56 11.47 59.85 0.69 1.25 16 10 C 0.06 0.47 11.40 -17.23 -0.20 0.27 16 11 N -0.74 -8.08 4.76 -58.67 -0.28 -8.36 16 12 C 0.70 11.00 8.50 -86.93 -0.74 10.26 16 13 O -0.59 -11.96 15.67 5.29 0.08 -11.88 16 14 N -0.74 -11.00 5.08 -58.63 -0.30 -11.29 16 15 C 0.17 3.12 2.42 -67.88 -0.16 2.96 16 16 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 17 C 0.17 4.35 5.31 -3.71 -0.02 4.33 16 18 N -0.59 -15.15 2.99 -172.32 -0.52 -15.67 16 19 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 20 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 22 N -0.90 -26.78 11.22 55.49 0.62 -26.15 16 23 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.17 6.51 -3.71 -0.02 3.15 16 28 C -0.14 -2.40 5.55 -26.61 -0.15 -2.55 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.39 3.18 8.62 -40.82 -0.35 2.83 16 40 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 41 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -36.21 405.50 -9.42 -45.63 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.53 Total: 4.67 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.69 Total: 6.88 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -0.36 Total: -68.35 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.21 -9.42 -45.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631245819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.042 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds