Wall clock time and date at job start Wed Apr 1 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47354 * 2 1 4 4 O 1.42898 * 109.47063 * 119.99746 * 2 1 3 5 5 C 1.50699 * 109.47287 * 239.99745 * 2 1 3 6 6 N 1.30293 * 126.34523 * 284.69371 * 5 2 1 7 7 N 1.28524 * 110.05398 * 180.26164 * 6 5 2 8 8 C 1.31219 * 109.86054 * 359.97438 * 7 6 5 9 9 N 1.38582 * 126.47422 * 179.97438 * 8 7 6 10 10 C 1.46959 * 110.99903 * 68.69841 * 9 8 7 11 11 C 1.53048 * 109.36400 * 176.81052 * 10 9 8 12 12 N 1.46952 * 109.36667 * 58.40250 * 11 10 9 13 13 C 1.46900 * 111.00426 * 176.81054 * 12 11 10 14 14 C 1.50703 * 109.46977 * 59.35046 * 13 12 11 15 15 H 1.07995 * 119.99884 * 355.19759 * 14 13 12 16 16 C 1.37872 * 119.99715 * 175.19773 * 14 13 12 17 17 N 1.31507 * 120.00434 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99568 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47260 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47085 * 120.00341 * 18 16 14 21 21 H 1.48498 * 109.47137 * 239.99861 * 18 16 14 22 22 C 1.46959 * 110.87849 * 300.67905 * 12 11 10 23 23 C 1.46952 * 110.99949 * 304.89962 * 9 8 7 24 24 N 1.36454 * 107.05360 * 0.02562 * 8 7 6 25 25 C 1.46493 * 127.13764 * 180.02562 * 24 8 7 26 26 C 1.53007 * 109.47100 * 265.21385 * 25 24 8 27 27 C 1.52997 * 117.49769 * 243.74702 * 26 25 24 28 28 C 1.52999 * 117.49821 * 175.08744 * 26 25 24 29 29 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46990 * 300.00425 * 1 2 3 31 31 H 1.09006 * 109.46972 * 60.00085 * 1 2 3 32 32 H 0.96708 * 113.99698 * 59.99724 * 4 2 1 33 33 H 1.09002 * 109.48942 * 296.78198 * 10 9 8 34 34 H 1.08996 * 109.49103 * 56.84522 * 10 9 8 35 35 H 1.09000 * 109.48998 * 298.43626 * 11 10 9 36 36 H 1.09002 * 109.48645 * 178.36881 * 11 10 9 37 37 H 1.09000 * 109.47263 * 179.34913 * 13 12 11 38 38 H 1.08994 * 109.46893 * 299.35382 * 13 12 11 39 39 H 0.96997 * 120.00451 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.49319 * 299.35097 * 22 12 11 41 41 H 1.09007 * 109.48699 * 179.28211 * 22 12 11 42 42 H 1.09002 * 109.49047 * 303.15255 * 23 9 8 43 43 H 1.08998 * 109.49397 * 63.20147 * 23 9 8 44 44 H 1.09002 * 109.47532 * 25.21171 * 25 24 8 45 45 H 1.08998 * 109.47452 * 145.21638 * 25 24 8 46 46 H 1.09002 * 115.54758 * 29.41650 * 26 25 24 47 47 H 1.09004 * 117.50268 * 359.97438 * 27 26 25 48 48 H 1.09002 * 117.49746 * 145.02040 * 27 26 25 49 49 H 1.09006 * 117.49830 * 214.97896 * 28 26 25 50 50 H 1.08995 * 117.50136 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2304 6 7 2.0388 -1.9980 -1.4301 7 7 2.5413 -2.2626 -2.5831 8 6 2.8847 -1.1489 -3.1860 9 7 3.4587 -1.0353 -4.4422 10 6 2.5040 -1.4134 -5.4935 11 6 3.1482 -1.1989 -6.8651 12 7 4.3751 -2.0023 -6.9583 13 6 4.9835 -1.8820 -8.2899 14 6 5.3147 -0.4372 -8.5622 15 1 5.0255 0.3257 -7.8546 16 6 5.9870 -0.0894 -9.7145 17 7 6.3397 -1.0184 -10.5759 18 14 6.3969 1.7015 -10.0523 19 1 5.8952 2.5431 -8.9364 20 1 7.8691 1.8592 -10.1673 21 1 5.7530 2.1259 -11.3213 22 6 5.3298 -1.6242 -5.9070 23 6 4.6856 -1.8388 -4.5353 24 7 2.5710 -0.1237 -2.3418 25 6 2.7693 1.3084 -2.5778 26 6 4.1001 1.7472 -1.9632 27 6 4.0495 2.7624 -0.8197 28 6 4.5469 3.1908 -2.2025 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7209 -1.5952 1.2329 33 1 2.2336 -2.4631 -5.3789 34 1 1.6094 -0.7961 -5.4115 35 1 3.3938 -0.1443 -6.9906 36 1 2.4523 -1.5060 -7.6458 37 1 5.8959 -2.4772 -8.3277 38 1 4.2831 -2.2423 -9.0433 39 1 6.8124 -0.7737 -11.3868 40 1 5.6002 -0.5746 -6.0215 41 1 6.2245 -2.2416 -5.9891 42 1 5.3815 -1.5317 -3.7546 43 1 4.4402 -2.8933 -4.4094 44 1 2.7834 1.5015 -3.6505 45 1 1.9549 1.8686 -2.1185 46 1 4.8742 0.9809 -1.9222 47 1 3.0682 3.1181 -0.5054 48 1 4.7906 2.6643 -0.0265 49 1 5.6151 3.3743 -2.3185 50 1 3.8931 3.8278 -2.7981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649297255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:57 Heat of formation + Delta-G solvation = 72.928457 kcal Electronic energy + Delta-G solvation = -30304.276719 eV Core-core repulsion = 26369.111245 eV Total energy + Delta-G solvation = -3935.165473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.11007 -38.89433 -38.08952 -37.65972 -35.28778 -34.47133 -32.50907 -31.65193 -30.53378 -29.37561 -28.02310 -27.30151 -25.05228 -24.37173 -23.12418 -22.77037 -22.25118 -21.73759 -21.03226 -20.64263 -19.12882 -18.02996 -16.90417 -16.77800 -16.33841 -16.25153 -15.51898 -15.19702 -15.00146 -14.80757 -14.68845 -14.34182 -14.21471 -14.10890 -13.49275 -13.25922 -13.12118 -13.05155 -12.45716 -12.31705 -12.05870 -12.04357 -11.89315 -11.86994 -11.62168 -11.21368 -10.99586 -10.93394 -10.89442 -10.83261 -10.70384 -10.63903 -10.51807 -10.36973 -10.22084 -10.15499 -9.91740 -9.61545 -9.07885 -8.63059 -8.48013 -7.25069 -6.07178 -4.16489 1.55712 2.07889 2.72591 3.22448 3.31028 3.33485 3.36629 3.71567 3.84546 4.06664 4.26323 4.31385 4.36244 4.49343 4.58276 4.61034 4.68687 4.90672 4.94865 5.05392 5.11597 5.16758 5.23184 5.25586 5.28541 5.45552 5.47917 5.54879 5.60363 5.61519 5.72882 5.75810 5.81590 5.84554 5.87017 5.91305 6.02561 6.13409 6.42029 6.53599 6.63976 6.76064 6.89705 7.19389 7.22325 7.31321 7.48336 7.85333 7.97104 8.18652 8.24382 8.64569 8.93980 9.50691 10.98054 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003160 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.771018 B = 8859.102945 C =10073.975934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.201 3.799 3 H 0.112 0.888 4 O -0.545 6.545 5 C 0.138 3.862 6 N -0.282 5.282 7 N -0.308 5.308 8 C 0.364 3.636 9 N -0.465 5.465 10 C 0.070 3.930 11 C 0.066 3.934 12 N -0.542 5.542 13 C 0.187 3.813 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.067 3.933 23 C 0.073 3.927 24 N -0.456 5.456 25 C 0.142 3.858 26 C -0.171 4.171 27 C -0.178 4.178 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.388 0.612 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 7.169 20.612 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.139 3.861 3 H 0.130 0.870 4 O -0.350 6.350 5 C -0.130 4.130 6 N -0.123 5.123 7 N -0.152 5.152 8 C 0.008 3.992 9 N -0.192 5.192 10 C -0.057 4.057 11 C -0.063 4.063 12 N -0.266 5.266 13 C 0.062 3.938 14 C -0.589 4.589 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.062 4.062 23 C -0.054 4.054 24 N -0.149 5.149 25 C 0.019 3.981 26 C -0.190 4.190 27 C -0.215 4.215 28 C -0.200 4.200 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.450 6.234 20.785 23.668 hybrid contribution 0.400 2.004 -0.912 2.238 sum -9.050 8.239 19.872 23.338 Atomic orbital electron populations 1.22485 0.94110 1.04023 1.03174 1.20024 0.93231 0.94678 0.78158 0.87008 1.86570 1.77474 1.30324 1.40654 1.25641 1.03327 0.91877 0.92151 1.73869 1.17166 1.10687 1.10619 1.74678 1.16102 1.22131 1.02309 1.22634 1.00216 0.83443 0.92903 1.59016 1.06626 1.57030 0.96523 1.22356 0.93117 0.99952 0.90300 1.21952 0.93306 0.97938 0.93112 1.62703 1.05136 1.52677 1.06119 1.19749 0.94896 0.95691 0.83496 1.21785 1.37387 0.94065 1.05639 0.92259 1.24960 0.95490 0.97179 0.96122 1.69946 1.39575 1.32504 1.10828 0.86602 0.78141 0.85446 0.78194 1.19857 1.20972 1.20965 1.21948 0.95068 1.00657 0.88564 1.22305 0.88289 0.95784 0.98980 1.46321 1.46015 1.08458 1.14078 1.21468 0.96514 0.76376 1.03763 1.22535 0.98577 0.94225 1.03707 1.23134 1.03175 1.02903 0.92240 1.22974 1.02469 0.95612 0.98931 0.91006 0.90454 0.91461 0.76284 0.92659 0.91386 0.93089 0.90561 0.94648 0.95227 0.92827 0.93180 0.90548 0.91294 0.92426 0.87055 0.89093 0.87144 0.88585 0.88398 0.88102 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.52 37.16 0.35 -0.86 16 2 C 0.20 1.75 3.95 -27.88 -0.11 1.64 16 3 H 0.11 0.82 7.35 -51.93 -0.38 0.44 16 4 O -0.55 -5.21 13.33 -35.23 -0.47 -5.68 16 5 C 0.14 1.69 6.93 -154.02 -1.07 0.62 16 6 N -0.28 -4.30 12.09 32.99 0.40 -3.90 16 7 N -0.31 -5.27 12.08 30.32 0.37 -4.90 16 8 C 0.36 5.59 6.50 -318.87 -2.07 3.51 16 9 N -0.47 -7.34 4.70 -174.35 -0.82 -8.16 16 10 C 0.07 1.12 5.55 -3.77 -0.02 1.10 16 11 C 0.07 1.23 5.24 -3.77 -0.02 1.21 16 12 N -0.54 -11.27 4.92 -235.90 -1.16 -12.43 16 13 C 0.19 4.66 5.14 -4.97 -0.03 4.64 16 14 C -0.55 -14.53 7.67 -34.44 -0.26 -14.79 16 15 H 0.06 1.56 5.81 -52.49 -0.31 1.25 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.07 1.26 5.32 -3.76 -0.02 1.24 16 23 C 0.07 1.21 5.47 -3.77 -0.02 1.19 16 24 N -0.46 -5.64 2.81 -114.09 -0.32 -5.96 16 25 C 0.14 1.33 6.01 -4.04 -0.02 1.30 16 26 C -0.17 -1.57 6.01 -90.62 -0.54 -2.11 16 27 C -0.18 -1.26 10.12 -26.70 -0.27 -1.53 16 28 C -0.16 -1.26 10.25 -26.69 -0.27 -1.53 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.39 2.98 8.97 45.56 0.41 3.39 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.05 1.03 6.46 -51.93 -0.34 0.69 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 41 H 0.08 1.44 8.13 -51.92 -0.42 1.02 16 42 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.11 1.13 8.12 -51.93 -0.42 0.71 16 45 H 0.09 0.60 7.49 -51.93 -0.39 0.22 16 46 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -31.37 402.74 -12.37 -43.74 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.67 Total: 2.98 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.48 Total: -2.68 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.80 Total: -60.26 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.47 Total: -5.68 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.37 -12.37 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649297255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.669 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds