Wall clock time and date at job start Wed Apr 1 2020 01:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99719 * 2 1 4 4 N 1.34775 * 120.00158 * 179.97438 * 2 1 3 5 5 C 1.47081 * 120.88022 * 5.49283 * 4 2 1 6 6 C 1.53237 * 108.52375 * 231.16423 * 5 4 2 7 7 N 1.46896 * 109.33769 * 306.16940 * 6 5 4 8 8 C 1.38581 * 111.00041 * 187.25493 * 7 6 5 9 9 N 1.31221 * 126.47076 * 300.35474 * 8 7 6 10 10 N 1.28526 * 109.86058 * 179.82277 * 9 8 7 11 11 C 1.30301 * 110.04958 * 0.45293 * 10 9 8 12 12 C 1.50706 * 126.34274 * 179.76444 * 11 10 9 13 13 C 1.52995 * 109.46912 * 235.18497 * 12 11 10 14 14 C 1.53000 * 109.47185 * 355.18392 * 12 11 10 15 15 C 1.50694 * 109.46992 * 115.18433 * 12 11 10 16 16 H 1.07999 * 120.00374 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99917 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00191 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99989 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 90.00041 * 19 17 15 21 21 H 1.48500 * 109.47125 * 209.99877 * 19 17 15 22 22 H 1.48499 * 109.47250 * 329.99575 * 19 17 15 23 23 N 1.36449 * 126.47565 * 120.66690 * 8 7 6 24 24 C 1.46500 * 127.13701 * 359.97438 * 23 8 7 25 25 C 1.46897 * 111.27099 * 63.10685 * 7 6 5 26 26 H 1.09001 * 109.49203 * 56.87812 * 25 7 6 27 27 C 1.52998 * 109.49787 * 176.93471 * 25 7 6 28 28 C 1.47076 * 120.88390 * 185.47497 * 4 2 1 29 29 H 1.08995 * 109.47131 * 185.42266 * 1 2 3 30 30 H 1.08996 * 109.46937 * 305.42696 * 1 2 3 31 31 H 1.09001 * 109.46498 * 65.42830 * 1 2 3 32 32 H 1.09006 * 109.62599 * 111.45017 * 5 4 2 33 33 H 1.09002 * 109.78964 * 350.97249 * 5 4 2 34 34 H 1.08995 * 109.49275 * 186.21502 * 6 5 4 35 35 H 1.08991 * 109.49501 * 66.13007 * 6 5 4 36 36 H 1.09001 * 109.47342 * 64.86073 * 13 12 11 37 37 H 1.09002 * 109.47036 * 184.86035 * 13 12 11 38 38 H 1.09002 * 109.47317 * 304.86052 * 13 12 11 39 39 H 1.08998 * 109.46980 * 59.99934 * 14 12 11 40 40 H 1.08998 * 109.46957 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47133 * 300.00039 * 14 12 11 42 42 H 0.97003 * 120.00757 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47512 * 95.01932 * 24 23 8 44 44 H 1.08999 * 109.47537 * 215.02329 * 24 23 8 45 45 H 1.09001 * 109.46965 * 335.02365 * 24 23 8 46 46 H 1.08996 * 109.47214 * 54.94250 * 27 25 7 47 47 H 1.08998 * 109.47037 * 294.94211 * 27 25 7 48 48 H 1.09001 * 109.47158 * 174.94729 * 27 25 7 49 49 H 1.08999 * 109.62727 * 9.12430 * 28 4 2 50 50 H 1.09003 * 109.62548 * 248.54671 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4702 -2.4492 -0.1197 6 6 1.9353 -3.3717 1.0120 7 7 3.4009 -3.4694 0.9888 8 6 3.8496 -4.4196 1.8922 9 7 3.6515 -4.4176 3.1893 10 7 4.2042 -5.4510 3.7171 11 6 4.7910 -6.1627 2.7968 12 6 5.5536 -7.4450 3.0102 13 6 6.9627 -7.3026 2.4316 14 6 5.6450 -7.7407 4.5086 15 6 4.8381 -8.5761 2.3177 16 1 3.9225 -8.3857 1.7774 17 6 5.3523 -9.8541 2.3738 18 7 6.4669 -10.0862 3.0320 19 14 4.4658 -11.2561 1.5147 20 1 4.9693 -11.3816 0.1234 21 1 4.7160 -12.5231 2.2478 22 1 3.0072 -10.9783 1.4902 23 7 4.5860 -5.5310 1.6016 24 6 5.0585 -5.9590 0.2826 25 6 4.0260 -2.1646 1.2432 26 1 3.6750 -1.7732 2.1981 27 6 5.5468 -2.3266 1.2858 28 6 3.6465 -1.1926 0.1210 29 1 -0.3633 -1.0230 0.0971 30 1 -0.3633 0.5957 0.8374 31 1 -0.3632 0.4274 -0.9346 32 1 1.6998 -2.9062 -1.0824 33 1 0.3957 -2.2845 -0.0397 34 1 1.5026 -4.3626 0.8747 35 1 1.6132 -2.9633 1.9698 36 1 7.5098 -6.5429 2.9900 37 1 7.4850 -8.2563 2.5082 38 1 6.8974 -7.0071 1.3844 39 1 4.6411 -7.8421 4.9208 40 1 6.1969 -8.6678 4.6629 41 1 6.1625 -6.9225 5.0095 42 1 6.8290 -10.9852 3.0712 43 1 6.0764 -5.6013 0.1276 44 1 5.0434 -7.0474 0.2267 45 1 4.4073 -5.5465 -0.4880 46 1 5.8876 -2.8003 0.3653 47 1 5.8222 -2.9481 2.1378 48 1 6.0139 -1.3468 1.3848 49 1 4.0115 -0.1943 0.3622 50 1 4.0853 -1.5289 -0.8185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650278684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:29 Heat of formation + Delta-G solvation = 65.151480 kcal Electronic energy + Delta-G solvation = -30925.714071 eV Core-core repulsion = 26990.211362 eV Total energy + Delta-G solvation = -3935.502708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35835 -40.43066 -38.35161 -35.83610 -34.99695 -33.97255 -32.99200 -31.47009 -30.35590 -29.07227 -27.52539 -26.90582 -25.98810 -25.64556 -25.35881 -23.20562 -22.13956 -21.68248 -20.09950 -19.36840 -18.75191 -17.60986 -16.77474 -16.54245 -16.23090 -15.85557 -15.71357 -15.19751 -15.03709 -14.91423 -14.44407 -13.93371 -13.67548 -13.41193 -13.32147 -13.14543 -12.71148 -12.54836 -12.40249 -12.35887 -12.19163 -11.92907 -11.69608 -11.63848 -11.49614 -11.42669 -11.23822 -11.17736 -10.99108 -10.81199 -10.57576 -10.35861 -10.27041 -10.04045 -9.89096 -9.71386 -9.41692 -9.16155 -9.05019 -8.61324 -8.51306 -8.11488 -6.18224 -4.31131 2.35881 2.41861 2.60331 2.85741 3.16303 3.25574 3.28127 3.60464 3.86732 4.25620 4.26041 4.52049 4.62021 4.62338 4.93695 4.96152 5.05950 5.06898 5.08484 5.12297 5.29648 5.32209 5.41118 5.47634 5.53616 5.59165 5.63034 5.63456 5.69470 5.83571 5.98362 6.04476 6.06183 6.07896 6.18674 6.52372 6.69082 6.71097 6.73568 6.77235 6.99920 7.10261 7.19858 7.25942 7.47029 7.52631 7.74967 7.88405 7.88883 7.98875 8.17236 8.66129 9.34986 9.49984 10.82502 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.003054 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.616030 B = 9166.906620 C = 9631.983468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.615 5.615 5 C 0.108 3.892 6 C 0.052 3.948 7 N -0.455 5.455 8 C 0.304 3.696 9 N -0.319 5.319 10 N -0.313 5.313 11 C 0.252 3.748 12 C 0.145 3.855 13 C -0.137 4.137 14 C -0.117 4.117 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 N -0.459 5.459 24 C 0.083 3.917 25 C 0.082 3.918 26 H 0.061 0.939 27 C -0.144 4.144 28 C 0.124 3.876 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.014 0.986 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.088 0.912 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 12.657 -9.466 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.304 3.696 3 O -0.428 6.428 4 N -0.349 5.349 5 C -0.015 4.015 6 C -0.076 4.076 7 N -0.181 5.181 8 C -0.053 4.053 9 N -0.163 5.163 10 N -0.152 5.152 11 C -0.016 4.016 12 C 0.142 3.858 13 C -0.195 4.195 14 C -0.176 4.176 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.130 4.130 18 N -0.516 5.516 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.199 1.199 23 N -0.150 5.150 24 C -0.060 4.060 25 C -0.027 4.027 26 H 0.079 0.921 27 C -0.202 4.202 28 C 0.001 3.999 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.730 13.379 -8.554 17.247 hybrid contribution -0.325 -1.095 -1.074 1.568 sum -7.055 12.285 -9.628 17.128 Atomic orbital electron populations 1.22026 0.91807 1.04683 1.05336 1.20813 0.90662 0.82917 0.75241 1.90712 1.70699 1.31028 1.50348 1.48267 1.07604 1.06265 1.72765 1.22065 0.97291 0.82801 0.99353 1.22490 0.85746 1.00787 0.98585 1.58508 1.07149 1.05468 1.46960 1.21861 1.01840 0.91200 0.90363 1.74417 1.21041 1.16969 1.03883 1.74047 1.13557 1.01851 1.25778 1.26166 0.98381 0.97729 0.79286 1.16927 0.90354 0.82867 0.95640 1.21960 0.97610 1.02530 0.97393 1.21623 1.00488 1.01240 0.94212 1.20847 1.08956 0.91728 1.33583 0.92719 1.24839 0.94834 0.98364 0.94961 1.69787 1.19577 1.21488 1.40734 0.86531 0.80097 0.81607 0.79461 1.20544 1.20931 1.19929 1.46073 1.40303 1.18772 1.09859 1.22056 0.99617 1.03584 0.80787 1.22041 0.95569 0.87042 0.98034 0.92065 1.21785 0.93096 1.02366 1.02975 1.21779 0.79490 1.00128 0.98518 0.89820 0.88642 0.88705 0.90073 0.88176 0.89116 0.92412 0.96652 0.88332 0.95294 0.94474 0.89299 0.96442 0.92523 0.91252 0.87666 0.90164 0.91645 0.92077 0.91335 0.88341 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 10.10 36.01 0.36 -0.81 16 2 C 0.51 5.58 7.80 -10.98 -0.09 5.50 16 3 O -0.55 -8.21 16.58 5.56 0.09 -8.11 16 4 N -0.61 -6.21 3.01 -172.46 -0.52 -6.73 16 5 C 0.11 0.87 6.52 -3.60 -0.02 0.84 16 6 C 0.05 0.60 5.52 -3.70 -0.02 0.58 16 7 N -0.45 -6.18 4.48 -166.67 -0.75 -6.93 16 8 C 0.30 5.38 4.79 -318.88 -1.53 3.86 16 9 N -0.32 -6.71 12.18 30.31 0.37 -6.34 16 10 N -0.31 -7.32 11.51 32.99 0.38 -6.94 16 11 C 0.25 5.58 6.28 -154.01 -0.97 4.62 16 12 C 0.15 3.37 0.53 -156.81 -0.08 3.29 16 13 C -0.14 -2.98 8.24 37.15 0.31 -2.67 16 14 C -0.12 -2.82 7.76 37.16 0.29 -2.53 16 15 C -0.51 -12.62 6.73 -34.44 -0.23 -12.85 16 16 H 0.05 1.38 7.67 -52.49 -0.40 0.97 16 17 C 0.07 1.79 5.14 -17.82 -0.09 1.70 16 18 N -0.88 -22.11 9.33 55.43 0.52 -21.59 16 19 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 N -0.46 -8.57 3.21 -121.46 -0.39 -8.96 16 24 C 0.08 1.26 9.42 59.85 0.56 1.82 16 25 C 0.08 1.03 2.56 -67.59 -0.17 0.86 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 C -0.14 -1.80 8.81 37.16 0.33 -1.47 16 28 C 0.12 1.34 5.86 -3.60 -0.02 1.32 16 29 H 0.08 0.38 5.18 -51.93 -0.27 0.11 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.53 5.12 -51.93 -0.27 0.26 16 34 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 2.33 5.95 -51.93 -0.31 2.02 16 38 H 0.03 0.56 5.51 -51.93 -0.29 0.28 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 43 H 0.07 0.96 7.56 -51.93 -0.39 0.57 16 44 H 0.10 1.77 6.55 -51.93 -0.34 1.43 16 45 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.96 7.26 -51.93 -0.38 0.58 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.14 7.10 -51.93 -0.37 0.77 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -30.76 385.27 -8.84 -39.60 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.95 Total: 1.75 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.38 Total: 4.05 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.39 Total: -57.50 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.76 -8.84 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650278684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.750 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds