Wall clock time and date at job start Tue Mar 31 2020 23:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49401 * 2 1 4 4 C 1.53041 * 109.49491 * 120.06166 * 2 1 3 5 5 C 1.53040 * 109.53779 * 58.61930 * 4 2 1 6 6 C 1.53189 * 109.31058 * 61.36412 * 5 4 2 7 7 N 1.46923 * 108.77973 * 305.36458 * 6 5 4 8 8 C 1.34781 * 120.63328 * 233.59162 * 7 6 5 9 9 O 1.21685 * 120.00063 * 183.69328 * 8 7 6 10 10 C 1.46768 * 119.99942 * 3.69049 * 8 7 6 11 11 C 1.41490 * 126.51820 * 329.80515 * 10 8 7 12 12 N 1.30283 * 108.19085 * 179.76949 * 11 10 8 13 13 N 1.39890 * 109.23044 * 0.23140 * 12 11 10 14 14 C 1.46504 * 125.74597 * 179.97438 * 13 12 11 15 15 C 1.34841 * 108.51006 * 359.97438 * 13 12 11 16 16 N 1.38012 * 126.44701 * 180.02562 * 15 13 12 17 17 C 1.46931 * 118.73852 * 53.85789 * 7 6 5 18 18 H 1.09001 * 109.58258 * 65.93374 * 17 7 6 19 19 C 1.53001 * 109.58587 * 186.35648 * 17 7 6 20 20 C 1.53003 * 109.46567 * 178.27512 * 19 17 7 21 21 N 1.46501 * 109.46830 * 174.64322 * 20 19 17 22 22 C 1.36939 * 120.00331 * 180.02562 * 21 20 19 23 23 H 1.07999 * 119.99431 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00358 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99983 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99730 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46884 * 90.00394 * 26 24 22 28 28 H 1.48504 * 109.47133 * 209.99927 * 26 24 22 29 29 H 1.48500 * 109.47587 * 330.00165 * 26 24 22 30 30 H 1.09000 * 109.46950 * 299.94015 * 1 2 3 31 31 H 1.09005 * 109.47002 * 59.93699 * 1 2 3 32 32 H 1.08990 * 109.46981 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46155 * 298.59705 * 4 2 1 34 34 H 1.09000 * 109.44742 * 178.63508 * 4 2 1 35 35 H 1.08997 * 109.49605 * 301.41106 * 5 4 2 36 36 H 1.09000 * 109.49446 * 181.31096 * 5 4 2 37 37 H 1.08999 * 109.58800 * 185.57398 * 6 5 4 38 38 H 1.09007 * 109.70789 * 65.22366 * 6 5 4 39 39 H 1.07998 * 125.90286 * 0.03669 * 11 10 8 40 40 H 1.09003 * 109.46934 * 90.01969 * 14 13 12 41 41 H 1.08993 * 109.47390 * 210.02031 * 14 13 12 42 42 H 1.09001 * 109.47476 * 330.02827 * 14 13 12 43 43 H 0.96994 * 120.00497 * 359.97438 * 16 15 13 44 44 H 0.97004 * 119.99778 * 179.97438 * 16 15 13 45 45 H 1.08998 * 109.47278 * 298.27545 * 19 17 7 46 46 H 1.08996 * 109.47162 * 58.27926 * 19 17 7 47 47 H 1.08996 * 109.47601 * 294.63673 * 20 19 17 48 48 H 1.08999 * 109.47285 * 54.64408 * 20 19 17 49 49 H 0.97001 * 120.00177 * 359.97438 * 21 20 19 50 50 H 0.97004 * 120.00022 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5036 -2.1556 1.2663 6 6 2.0153 -2.9037 0.0313 7 7 1.6529 -2.1383 -1.1692 8 6 0.9766 -2.7226 -2.1781 9 8 0.7411 -2.0974 -3.1951 10 6 0.5244 -4.1130 -2.0500 11 6 1.1528 -5.1373 -1.3032 12 7 0.4492 -6.2260 -1.4339 13 7 -0.6487 -5.9685 -2.2617 14 6 -1.6747 -6.9397 -2.6495 15 6 -0.6036 -4.6758 -2.6427 16 7 -1.5077 -4.0304 -3.4618 17 6 2.0469 -0.7252 -1.2518 18 1 3.1334 -0.6509 -1.2980 19 6 1.4331 -0.0938 -2.5030 20 6 1.8096 1.3880 -2.5634 21 7 1.3310 1.9623 -3.8233 22 6 1.5542 3.2844 -4.1017 23 1 2.0827 3.9038 -3.3921 24 6 1.1012 3.8285 -5.2957 25 7 1.3154 5.0993 -5.5629 26 14 0.1877 2.7569 -6.5231 27 1 -1.2684 2.8065 -6.2359 28 1 0.4381 3.2566 -7.8990 29 1 0.6672 1.3560 -6.4104 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6983 -0.1955 2.1390 34 1 3.1305 -0.7435 1.2357 35 1 0.4139 -2.1358 1.2541 36 1 1.8487 -2.6623 2.1675 37 1 1.5573 -3.8918 -0.0132 38 1 3.0992 -3.0057 0.0863 39 1 2.0569 -5.0335 -0.7216 40 1 -2.4878 -6.9185 -1.9238 41 1 -2.0617 -6.6851 -3.6361 42 1 -1.2382 -7.9381 -2.6768 43 1 -2.2665 -4.5147 -3.8231 44 1 -1.3843 -3.0925 -3.6762 45 1 1.8125 -0.6016 -3.3897 46 1 0.3482 -0.1917 -2.4644 47 1 1.3501 1.9141 -1.7267 48 1 2.8932 1.4902 -2.5060 49 1 0.8566 1.4059 -4.4608 50 1 0.9991 5.4795 -6.3974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656434689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:21 Heat of formation + Delta-G solvation = 85.242806 kcal Electronic energy + Delta-G solvation = -30711.619765 eV Core-core repulsion = 26776.988282 eV Total energy + Delta-G solvation = -3934.631483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.70834 -40.27939 -37.50401 -35.52748 -35.10995 -33.81642 -33.00268 -32.63831 -30.99532 -29.23190 -28.36574 -27.59061 -26.53909 -25.13419 -23.72449 -22.47163 -22.18384 -21.13342 -20.59264 -19.85585 -18.60374 -17.72475 -17.50086 -16.83237 -16.41508 -16.06079 -15.80528 -15.29499 -15.18632 -14.56890 -14.46205 -14.33632 -13.93905 -13.58659 -13.49439 -13.38982 -13.22539 -13.07928 -12.87327 -12.76999 -12.67289 -12.36851 -11.84870 -11.68193 -11.48430 -11.27056 -11.22488 -11.01271 -10.85334 -10.82410 -10.76563 -10.39639 -10.25227 -10.06948 -10.00728 -9.46887 -9.24130 -8.77582 -8.65188 -8.40176 -7.98390 -7.05815 -5.64881 -2.97854 1.69391 1.95840 2.09231 3.08350 3.39881 3.46802 3.48415 3.54488 3.55935 4.14143 4.58687 4.66427 4.70688 4.72155 4.77671 4.82666 4.94748 4.98643 5.05725 5.13528 5.20400 5.22258 5.35677 5.43129 5.57988 5.63819 5.67212 5.74364 5.78943 5.85087 5.92614 6.02948 6.06504 6.08040 6.15001 6.26312 6.29816 6.31280 6.33011 6.52702 6.60439 6.77242 7.01387 7.06741 7.14000 7.21958 7.54599 7.68146 8.13951 8.49707 8.55991 9.36731 10.10109 10.32024 11.54052 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003693 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.071709 B = 7579.844185 C = 9450.277276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.085 3.915 7 N -0.600 5.600 8 C 0.600 3.400 9 O -0.542 6.542 10 C -0.366 4.366 11 C 0.099 3.901 12 N -0.308 5.308 13 N -0.402 5.402 14 C 0.102 3.898 15 C 0.429 3.571 16 N -0.832 5.832 17 C 0.160 3.840 18 H 0.070 0.930 19 C -0.119 4.119 20 C 0.151 3.849 21 N -0.755 5.755 22 C -0.237 4.237 23 H 0.088 0.912 24 C 0.000 4.000 25 N -0.939 5.939 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.400 0.600 44 H 0.431 0.569 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.019 0.981 49 H 0.362 0.638 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -26.693 14.175 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.153 4.153 5 C -0.174 4.174 6 C -0.038 4.038 7 N -0.333 5.333 8 C 0.390 3.610 9 O -0.421 6.421 10 C -0.385 4.385 11 C -0.090 4.090 12 N -0.127 5.127 13 N -0.190 5.190 14 C -0.039 4.039 15 C 0.195 3.805 16 N -0.381 5.381 17 C 0.057 3.943 18 H 0.088 0.912 19 C -0.157 4.157 20 C 0.023 3.977 21 N -0.400 5.400 22 C -0.367 4.367 23 H 0.106 0.894 24 C -0.195 4.195 25 N -0.588 5.588 26 Si 0.714 3.286 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.200 1.200 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.214 0.786 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.228 0.772 44 H 0.266 0.734 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.195 0.805 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.742 -27.474 13.976 31.187 hybrid contribution -0.863 0.316 -1.288 1.582 sum -5.606 -27.158 12.688 30.495 Atomic orbital electron populations 1.21859 0.94947 1.01485 1.01935 1.21637 0.96755 0.99971 0.94024 0.89490 1.21564 1.00396 0.95346 0.97945 1.21942 1.01715 0.96359 0.97348 1.22367 1.00095 0.96719 0.84598 1.47799 1.56814 1.11074 1.17579 1.17028 0.77027 0.84411 0.82506 1.90858 1.57721 1.64208 1.29335 1.19363 1.03766 0.96817 1.18601 1.24047 0.99071 0.89359 0.96481 1.77115 0.98061 1.22900 1.14650 1.48124 1.23074 1.06365 1.41467 1.21795 0.88920 0.92761 1.00464 1.17977 0.89990 0.83712 0.88784 1.41688 1.27626 1.15592 1.53144 1.21359 0.98385 0.78783 0.95815 0.91172 1.22315 1.01659 0.94955 0.96729 1.20804 0.96441 0.91471 0.89002 1.42706 1.69410 1.09100 1.18768 1.19100 1.30263 0.84792 1.02509 0.89371 1.24651 1.01206 0.95786 0.97839 1.69710 1.52108 1.11530 1.25441 0.86534 0.80126 0.80523 0.81442 1.21251 1.21928 1.20014 0.93270 0.91655 0.92901 0.91897 0.91895 0.91219 0.91224 0.87919 0.91526 0.78595 0.90800 0.90121 0.88769 0.77162 0.73410 0.89106 0.90976 0.95876 0.96313 0.80543 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.21 37.16 0.31 -1.55 16 2 C -0.10 -1.28 2.27 -90.27 -0.20 -1.48 16 3 H 0.09 1.15 6.88 -51.93 -0.36 0.79 16 4 C -0.11 -1.08 5.43 -26.69 -0.14 -1.22 16 5 C -0.14 -1.12 5.74 -26.61 -0.15 -1.27 16 6 C 0.09 0.74 5.57 -3.71 -0.02 0.72 16 7 N -0.60 -7.33 2.40 -166.46 -0.40 -7.73 16 8 C 0.60 8.47 7.45 -12.81 -0.10 8.38 16 9 O -0.54 -9.38 11.26 5.20 0.06 -9.32 16 10 C -0.37 -4.43 5.73 -104.82 -0.60 -5.03 16 11 C 0.10 1.01 9.70 -16.97 -0.16 0.85 16 12 N -0.31 -3.35 12.47 30.88 0.38 -2.97 16 13 N -0.40 -3.82 4.00 -66.82 -0.27 -4.09 16 14 C 0.10 0.52 11.25 59.85 0.67 1.19 16 15 C 0.43 4.65 7.97 -153.78 -1.23 3.43 16 16 N -0.83 -7.34 9.02 31.40 0.28 -7.06 16 17 C 0.16 2.21 2.75 -67.37 -0.19 2.02 16 18 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.12 -2.11 2.76 -26.73 -0.07 -2.19 16 20 C 0.15 3.15 5.72 -4.04 -0.02 3.13 16 21 N -0.75 -19.55 5.41 -59.91 -0.32 -19.87 16 22 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 23 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 24 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 25 N -0.94 -30.70 13.97 55.49 0.78 -29.93 16 26 Si 0.88 23.47 27.73 -169.99 -4.71 18.75 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 29 H -0.27 -7.04 6.52 56.52 0.37 -6.67 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.99 6.28 -51.93 -0.33 0.66 16 32 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.80 3.22 -51.93 -0.17 0.64 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.20 1.42 5.97 -52.49 -0.31 1.11 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.24 7.46 -51.93 -0.39 -0.14 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.40 2.18 8.04 -40.82 -0.33 1.85 16 44 H 0.43 4.55 7.60 -40.82 -0.31 4.24 16 45 H 0.09 1.83 6.28 -51.93 -0.33 1.51 16 46 H 0.07 1.35 5.48 -51.93 -0.28 1.06 16 47 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.36 9.36 5.53 -40.82 -0.23 9.14 16 50 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -37.37 374.94 -8.13 -45.51 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.41 Total: 11.43 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.17 Total: -0.38 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: 0.45 Total: -71.65 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.06 Total: -9.32 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.71 Total: 18.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.37 -8.13 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656434689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.748 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds