Wall clock time and date at job start Tue Mar 31 2020 23:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49401 * 2 1 4 4 C 1.53041 * 109.49491 * 120.06166 * 2 1 3 5 5 C 1.53040 * 109.53779 * 58.61930 * 4 2 1 6 6 C 1.53189 * 109.31058 * 61.36412 * 5 4 2 7 7 N 1.46923 * 108.77973 * 305.36458 * 6 5 4 8 8 C 1.34781 * 120.63328 * 233.59162 * 7 6 5 9 9 O 1.21685 * 120.00063 * 183.69328 * 8 7 6 10 10 C 1.46768 * 119.99942 * 3.69049 * 8 7 6 11 11 C 1.41490 * 126.51820 * 329.80515 * 10 8 7 12 12 N 1.30283 * 108.19085 * 179.76949 * 11 10 8 13 13 N 1.39890 * 109.23044 * 0.23140 * 12 11 10 14 14 C 1.46504 * 125.74597 * 179.97438 * 13 12 11 15 15 C 1.34841 * 108.51006 * 359.97438 * 13 12 11 16 16 N 1.38012 * 126.44701 * 180.02562 * 15 13 12 17 17 C 1.46931 * 118.73852 * 53.85789 * 7 6 5 18 18 H 1.09001 * 109.58258 * 65.93374 * 17 7 6 19 19 C 1.53001 * 109.58587 * 186.35648 * 17 7 6 20 20 C 1.53003 * 109.46567 * 178.27512 * 19 17 7 21 21 N 1.46501 * 109.46830 * 174.64322 * 20 19 17 22 22 C 1.36939 * 120.00331 * 180.02562 * 21 20 19 23 23 H 1.07999 * 119.99431 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00358 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99983 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99730 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46884 * 90.00394 * 26 24 22 28 28 H 1.48504 * 109.47133 * 209.99927 * 26 24 22 29 29 H 1.48500 * 109.47587 * 330.00165 * 26 24 22 30 30 H 1.09000 * 109.46950 * 299.94015 * 1 2 3 31 31 H 1.09005 * 109.47002 * 59.93699 * 1 2 3 32 32 H 1.08990 * 109.46981 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46155 * 298.59705 * 4 2 1 34 34 H 1.09000 * 109.44742 * 178.63508 * 4 2 1 35 35 H 1.08997 * 109.49605 * 301.41106 * 5 4 2 36 36 H 1.09000 * 109.49446 * 181.31096 * 5 4 2 37 37 H 1.08999 * 109.58800 * 185.57398 * 6 5 4 38 38 H 1.09007 * 109.70789 * 65.22366 * 6 5 4 39 39 H 1.07998 * 125.90286 * 0.03669 * 11 10 8 40 40 H 1.09003 * 109.46934 * 90.01969 * 14 13 12 41 41 H 1.08993 * 109.47390 * 210.02031 * 14 13 12 42 42 H 1.09001 * 109.47476 * 330.02827 * 14 13 12 43 43 H 0.96994 * 120.00497 * 359.97438 * 16 15 13 44 44 H 0.97004 * 119.99778 * 179.97438 * 16 15 13 45 45 H 1.08998 * 109.47278 * 298.27545 * 19 17 7 46 46 H 1.08996 * 109.47162 * 58.27926 * 19 17 7 47 47 H 1.08996 * 109.47601 * 294.63673 * 20 19 17 48 48 H 1.08999 * 109.47285 * 54.64408 * 20 19 17 49 49 H 0.97001 * 120.00177 * 359.97438 * 21 20 19 50 50 H 0.97004 * 120.00022 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5036 -2.1556 1.2663 6 6 2.0153 -2.9037 0.0313 7 7 1.6529 -2.1383 -1.1692 8 6 0.9766 -2.7226 -2.1781 9 8 0.7411 -2.0974 -3.1951 10 6 0.5244 -4.1130 -2.0500 11 6 1.1528 -5.1373 -1.3032 12 7 0.4492 -6.2260 -1.4339 13 7 -0.6487 -5.9685 -2.2617 14 6 -1.6747 -6.9397 -2.6495 15 6 -0.6036 -4.6758 -2.6427 16 7 -1.5077 -4.0304 -3.4618 17 6 2.0469 -0.7252 -1.2518 18 1 3.1334 -0.6509 -1.2980 19 6 1.4331 -0.0938 -2.5030 20 6 1.8096 1.3880 -2.5634 21 7 1.3310 1.9623 -3.8233 22 6 1.5542 3.2844 -4.1017 23 1 2.0827 3.9038 -3.3921 24 6 1.1012 3.8285 -5.2957 25 7 1.3154 5.0993 -5.5629 26 14 0.1877 2.7569 -6.5231 27 1 -1.2684 2.8065 -6.2359 28 1 0.4381 3.2566 -7.8990 29 1 0.6672 1.3560 -6.4104 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6983 -0.1955 2.1390 34 1 3.1305 -0.7435 1.2357 35 1 0.4139 -2.1358 1.2541 36 1 1.8487 -2.6623 2.1675 37 1 1.5573 -3.8918 -0.0132 38 1 3.0992 -3.0057 0.0863 39 1 2.0569 -5.0335 -0.7216 40 1 -2.4878 -6.9185 -1.9238 41 1 -2.0617 -6.6851 -3.6361 42 1 -1.2382 -7.9381 -2.6768 43 1 -2.2665 -4.5147 -3.8231 44 1 -1.3843 -3.0925 -3.6762 45 1 1.8125 -0.6016 -3.3897 46 1 0.3482 -0.1917 -2.4644 47 1 1.3501 1.9141 -1.7267 48 1 2.8932 1.4902 -2.5060 49 1 0.8566 1.4059 -4.4608 50 1 0.9991 5.4795 -6.3974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656434689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:07 Heat of formation + Delta-G solvation = 58.628944 kcal Electronic energy + Delta-G solvation = -30712.773828 eV Core-core repulsion = 26776.988282 eV Total energy + Delta-G solvation = -3935.785547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 17.12 seconds Orbital eigenvalues (eV) -42.50501 -41.24431 -38.52730 -37.14031 -35.99316 -34.99772 -34.05968 -33.74080 -32.82571 -30.29454 -29.56032 -28.36207 -27.39490 -26.40342 -25.06100 -23.84926 -23.12655 -22.42803 -21.64523 -20.76599 -19.71281 -19.43896 -18.44020 -17.79357 -17.31779 -16.85728 -16.80587 -16.60349 -16.23386 -15.95121 -15.74431 -15.34143 -15.25464 -14.86109 -14.66680 -14.48882 -14.31983 -14.17641 -13.88271 -13.72860 -13.58457 -13.47759 -13.20925 -12.99275 -12.93782 -12.44337 -12.37933 -12.31405 -12.14032 -12.08083 -11.84242 -11.76901 -11.67332 -11.62467 -11.25359 -11.13033 -10.93447 -10.01374 -9.81050 -9.40189 -9.28030 -8.79107 -8.04364 -5.36302 0.89895 1.27702 1.31338 1.35424 1.37746 1.46976 2.13396 2.46912 2.51703 2.76217 3.26823 3.47504 3.63184 3.82429 3.95514 3.99093 4.04700 4.18372 4.22096 4.30664 4.37983 4.38485 4.49854 4.51475 4.54090 4.63490 4.64946 4.68297 4.75890 4.83069 4.87063 4.91699 4.97257 5.05247 5.16276 5.27268 5.29829 5.36162 5.38008 5.47516 5.53347 5.59268 5.64122 5.74171 5.87583 6.21158 6.22303 6.50915 6.66205 6.88625 7.06719 7.47644 7.85332 8.04800 9.17468 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003693 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.071709 B = 7579.844185 C = 9450.277276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.130 4.130 6 C 0.080 3.920 7 N -0.596 5.596 8 C 0.593 3.407 9 O -0.584 6.584 10 C -0.391 4.391 11 C 0.104 3.896 12 N -0.324 5.324 13 N -0.400 5.400 14 C 0.091 3.909 15 C 0.422 3.578 16 N -0.824 5.824 17 C 0.163 3.837 18 H 0.075 0.925 19 C -0.096 4.096 20 C 0.150 3.850 21 N -0.759 5.759 22 C -0.233 4.233 23 H 0.059 0.941 24 C -0.063 4.063 25 N -0.983 5.983 26 Si 0.954 3.046 27 H -0.276 1.276 28 H -0.290 1.290 29 H -0.262 1.262 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.414 0.586 44 H 0.423 0.577 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.027 0.973 48 H 0.018 0.982 49 H 0.363 0.637 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -29.794 15.581 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.168 4.168 6 C -0.041 4.041 7 N -0.328 5.328 8 C 0.385 3.615 9 O -0.467 6.467 10 C -0.410 4.410 11 C -0.084 4.084 12 N -0.143 5.143 13 N -0.189 5.189 14 C -0.049 4.049 15 C 0.186 3.814 16 N -0.373 5.373 17 C 0.059 3.941 18 H 0.093 0.907 19 C -0.134 4.134 20 C 0.024 3.976 21 N -0.405 5.405 22 C -0.364 4.364 23 H 0.077 0.923 24 C -0.254 4.254 25 N -0.634 5.634 26 Si 0.782 3.218 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.187 1.187 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.239 0.761 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.246 0.754 44 H 0.257 0.743 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.195 0.805 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.188 -30.651 15.441 34.711 hybrid contribution -0.724 1.272 -1.657 2.210 sum -5.913 -29.380 13.784 32.987 Atomic orbital electron populations 1.21783 0.95462 1.01342 1.00965 1.21608 0.96225 0.99533 0.94875 0.90807 1.21540 1.01032 0.95827 0.96332 1.21927 1.01056 0.95631 0.98196 1.22658 1.01531 0.96773 0.83133 1.47830 1.56184 1.10351 1.18416 1.17390 0.76744 0.85153 0.82206 1.90825 1.59490 1.65382 1.30992 1.19344 1.05075 0.96204 1.20412 1.24394 0.99569 0.88396 0.96062 1.77063 0.98711 1.23313 1.15217 1.48404 1.23291 1.06372 1.40826 1.22168 0.88428 0.92260 1.02022 1.18130 0.90060 0.84419 0.88749 1.41660 1.27816 1.15227 1.52608 1.21189 0.98290 0.80059 0.94552 0.90708 1.22027 1.01005 0.92330 0.98051 1.20975 0.96057 0.93657 0.86956 1.42783 1.69531 1.07721 1.20430 1.19097 1.29149 0.86238 1.01885 0.92337 1.25454 1.02735 0.97199 1.00044 1.69874 1.53771 1.13525 1.26239 0.85411 0.78959 0.79008 0.78465 1.20210 1.21683 1.18744 0.92050 0.94721 0.92600 0.90895 0.90801 0.92233 0.88297 0.86768 0.89441 0.76134 0.89330 0.88090 0.88000 0.75391 0.74318 0.91398 0.92101 0.95541 0.96430 0.80455 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.21 71.98 0.59 -2.88 16 2 C -0.10 -2.42 2.27 -10.57 -0.02 -2.44 16 3 H 0.07 1.92 6.88 -2.39 -0.02 1.90 16 4 C -0.11 -1.75 5.43 30.62 0.17 -1.59 16 5 C -0.13 -1.70 5.74 30.67 0.18 -1.53 16 6 C 0.08 1.16 5.57 86.36 0.48 1.64 16 7 N -0.60 -13.81 2.40 -798.77 -1.92 -15.73 16 8 C 0.59 16.50 7.45 86.47 0.64 17.14 16 9 O -0.58 -20.60 11.26 -4.30 -0.05 -20.64 16 10 C -0.39 -9.01 5.73 -19.99 -0.11 -9.12 16 11 C 0.10 1.91 9.70 85.72 0.83 2.74 16 12 N -0.32 -6.37 12.47 -56.23 -0.70 -7.07 16 13 N -0.40 -6.85 4.00 -365.31 -1.46 -8.31 16 14 C 0.09 0.70 11.25 127.77 1.44 2.14 16 15 C 0.42 8.63 7.97 132.69 1.06 9.69 16 16 N -0.82 -13.82 9.02 -54.57 -0.49 -14.32 16 17 C 0.16 4.41 2.75 45.12 0.12 4.53 16 18 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 19 C -0.10 -3.49 2.76 30.60 0.08 -3.41 16 20 C 0.15 6.43 5.72 86.38 0.49 6.93 16 21 N -0.76 -40.03 5.41 -343.45 -1.86 -41.88 16 22 C -0.23 -14.34 10.47 84.03 0.88 -13.46 16 23 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 24 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 25 N -0.98 -65.75 13.97 21.65 0.30 -65.45 16 26 Si 0.95 49.18 27.73 68.60 1.90 51.08 16 27 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.26 -12.88 6.52 99.48 0.65 -12.23 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.07 6.28 -2.38 -0.01 1.05 16 32 H 0.06 1.36 5.97 -2.39 -0.01 1.34 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.93 6.34 -2.39 -0.02 0.92 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 1.43 3.22 -2.39 -0.01 1.42 16 38 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.22 2.54 5.97 -2.91 -0.02 2.52 16 40 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.35 7.46 -2.39 -0.02 0.33 16 42 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.41 3.92 8.04 -92.71 -0.75 3.17 16 44 H 0.42 8.93 7.60 -92.71 -0.70 8.23 16 45 H 0.07 2.81 6.28 -2.39 -0.02 2.80 16 46 H 0.06 2.35 5.48 -2.39 -0.01 2.33 16 47 H 0.03 1.13 6.73 -2.39 -0.02 1.11 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.36 18.87 5.53 -92.71 -0.51 18.36 16 50 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -82.93 374.94 2.01 -80.92 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -1.02 Total: 34.50 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 7.30 Total: 6.91 kcal Atomic # 7 Polarization: -146.64 SS G_CDS: -6.13 Total: -152.76 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.90 Total: 51.08 kcal Total: -82.93 2.01 -80.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656434689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.550 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.12 seconds