Wall clock time and date at job start Wed Apr 1 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 N 1.46499 * 109.46727 * 239.99927 * 2 1 3 5 5 C 1.34778 * 120.00032 * 85.00307 * 4 2 1 6 6 O 1.21285 * 119.99745 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00378 * 179.97438 * 5 4 2 8 8 C 1.52993 * 109.47182 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46979 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.34432 * 126.82562 * 124.99804 * 10 9 8 12 12 N 1.30827 * 108.07893 * 179.97438 * 11 10 9 13 13 C 1.33237 * 109.83108 * 0.02562 * 12 11 10 14 14 N 1.30713 * 108.94662 * 0.25928 * 13 12 11 15 15 C 1.52996 * 109.46815 * 120.00366 * 2 1 3 16 16 C 1.53035 * 109.46497 * 60.06533 * 15 2 1 17 17 C 1.53185 * 109.31549 * 178.60946 * 16 15 2 18 18 N 1.46927 * 108.77319 * 54.63826 * 17 16 15 19 19 C 1.36935 * 120.63283 * 126.41259 * 18 17 16 20 20 H 1.07999 * 120.00168 * 331.80941 * 19 18 17 21 21 C 1.38817 * 120.00187 * 151.80782 * 19 18 17 22 22 N 1.31614 * 120.00058 * 343.08463 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 163.07953 * 21 19 18 24 24 H 1.48498 * 109.47173 * 90.00470 * 23 21 19 25 25 H 1.48500 * 109.47068 * 210.00147 * 23 21 19 26 26 H 1.48499 * 109.47224 * 330.00309 * 23 21 19 27 27 C 1.46932 * 118.73885 * 306.38910 * 18 17 16 28 28 C 1.53045 * 109.46147 * 299.99458 * 15 2 1 29 29 H 1.08995 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46893 * 300.00211 * 1 2 3 31 31 H 1.09000 * 109.47135 * 59.99610 * 1 2 3 32 32 H 0.96999 * 120.00418 * 264.99854 * 4 2 1 33 33 H 1.09001 * 109.47021 * 59.99839 * 7 5 4 34 34 H 1.09003 * 109.46797 * 299.99726 * 7 5 4 35 35 H 1.09001 * 109.47283 * 59.99988 * 8 7 5 36 36 H 1.08999 * 109.47800 * 300.00033 * 8 7 5 37 37 H 1.08999 * 109.47255 * 60.00416 * 9 8 7 38 38 H 1.09003 * 109.46896 * 299.99651 * 9 8 7 39 39 H 1.08006 * 125.95473 * 359.97438 * 11 10 9 40 40 H 1.08002 * 125.53099 * 179.97438 * 13 12 11 41 41 H 1.09007 * 109.45477 * 180.02562 * 15 2 1 42 42 H 1.08998 * 109.49844 * 298.56705 * 16 15 2 43 43 H 1.09003 * 109.49716 * 58.66249 * 16 15 2 44 44 H 1.09000 * 109.59040 * 294.85254 * 17 16 15 45 45 H 1.09008 * 109.70660 * 174.49042 * 17 16 15 46 46 H 0.97001 * 120.00467 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58453 * 293.81991 * 27 18 17 48 48 H 1.09002 * 109.58645 * 173.39544 * 27 18 17 49 49 H 1.09000 * 109.49977 * 301.34336 * 28 15 2 50 50 H 1.09006 * 109.49475 * 61.40169 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5875 8 6 2.7017 0.2548 -4.7585 9 6 3.2116 -0.4665 -6.0079 10 7 3.2620 0.4751 -7.1290 11 6 4.3283 0.7564 -7.8978 12 7 3.9649 1.6448 -8.7868 13 6 2.6800 1.9541 -8.6176 14 7 2.2073 1.2678 -7.6106 15 6 2.0399 -0.7213 1.2492 16 6 1.5311 -2.1646 1.2481 17 6 2.0719 -2.8935 2.4821 18 7 1.7085 -2.1265 3.6814 19 6 1.0455 -2.7260 4.7187 20 1 0.3979 -3.5696 4.5301 21 6 1.2055 -2.2496 6.0127 22 7 2.2196 -1.4627 6.3035 23 14 -0.0185 -2.7254 7.3412 24 1 0.4356 -3.9714 8.0094 25 1 -0.1120 -1.6327 8.3425 26 1 -1.3521 -2.9503 6.7280 27 6 2.0706 -0.7040 3.7469 28 6 1.5297 0.0003 2.4987 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 1.9775 -1.5508 -3.8326 34 1 3.6491 -1.1203 -3.3980 35 1 3.3742 1.0768 -4.5132 36 1 1.7027 0.6471 -4.9483 37 1 2.5387 -1.2882 -6.2531 38 1 4.2107 -0.8591 -5.8184 39 1 5.3132 0.3243 -7.7987 40 1 2.1210 2.6609 -9.2129 41 1 3.1300 -0.7208 1.2492 42 1 0.4414 -2.1661 1.2731 43 1 1.8754 -2.6711 0.3464 44 1 3.1569 -2.9723 2.4136 45 1 1.6360 -3.8909 2.5403 46 1 2.3313 -1.1295 7.2076 47 1 3.1555 -0.6043 3.7816 48 1 1.6317 -0.2559 4.6383 49 1 1.8731 1.0348 2.4871 50 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677367603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:13 Heat of formation + Delta-G solvation = 59.670023 kcal Electronic energy + Delta-G solvation = -28464.962410 eV Core-core repulsion = 24529.222008 eV Total energy + Delta-G solvation = -3935.740402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.38837 -40.11468 -38.20345 -36.03549 -35.27025 -33.02403 -32.48391 -31.54933 -31.17272 -29.85825 -28.97950 -27.55841 -25.46999 -23.96640 -23.04074 -22.37901 -22.32374 -21.53174 -20.64856 -20.21413 -18.71670 -17.94816 -17.02350 -16.66614 -16.53952 -15.87631 -15.80327 -15.29233 -14.83198 -14.66588 -14.44514 -14.18546 -14.06353 -13.75891 -13.59133 -13.32238 -13.10369 -12.96918 -12.56646 -12.51794 -12.28656 -12.11417 -11.99797 -11.68830 -11.43856 -11.30596 -11.26656 -10.94453 -10.72390 -10.48740 -10.37775 -10.21448 -10.16381 -10.14018 -10.09512 -10.02723 -9.84859 -9.54527 -9.43830 -9.02048 -8.49137 -6.69156 -5.81515 -3.23967 1.27085 1.90530 2.55264 2.62473 3.10809 3.34993 3.42522 3.44548 3.94674 3.96807 4.30230 4.38025 4.47211 4.57510 4.67209 4.76112 4.88471 4.95573 5.04485 5.11918 5.15322 5.29971 5.37216 5.49531 5.55240 5.63041 5.70341 5.81166 5.83223 5.87016 6.00104 6.06958 6.07700 6.12162 6.23787 6.34378 6.38795 6.40954 6.53295 6.59681 6.69986 6.73756 6.78309 6.94848 7.35105 7.47843 7.63718 7.71616 7.76848 8.17020 8.42768 9.19006 9.82630 10.39329 11.26930 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.001678 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.491276 B =16686.164791 C =16827.644992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.082 0.918 4 N -0.722 5.722 5 C 0.510 3.490 6 O -0.543 6.543 7 C -0.140 4.140 8 C -0.115 4.115 9 C 0.128 3.872 10 N -0.377 5.377 11 C 0.252 3.748 12 N -0.550 5.550 13 C 0.195 3.805 14 N -0.314 5.314 15 C -0.085 4.085 16 C -0.128 4.128 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.219 0.781 40 H 0.216 0.784 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 0.356 -25.024 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.100 0.900 4 N -0.374 5.374 5 C 0.296 3.704 6 O -0.420 6.420 7 C -0.181 4.181 8 C -0.154 4.154 9 C 0.006 3.994 10 N -0.168 5.168 11 C -0.045 4.045 12 N -0.277 5.277 13 C -0.108 4.108 14 N -0.142 5.142 15 C -0.104 4.104 16 C -0.168 4.168 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.174 4.174 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.235 0.765 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.235 0.765 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.887 1.396 -24.805 25.012 hybrid contribution -0.225 -0.866 0.911 1.277 sum 2.662 0.531 -23.894 24.048 Atomic orbital electron populations 1.22219 0.95388 1.02301 1.02093 1.21122 0.94234 0.96938 0.83617 0.89968 1.46264 1.66967 1.14218 1.09902 1.20499 0.77833 0.87409 0.84640 1.90724 1.50120 1.16133 1.85044 1.21586 1.03593 0.99596 0.93294 1.21568 1.04495 0.98114 0.91193 1.21920 1.03989 0.89976 0.83511 1.50580 1.07874 1.32346 1.26012 1.26099 0.94981 0.94727 0.88686 1.70536 1.13747 1.17149 1.26265 1.26037 0.90523 0.99257 0.94942 1.78089 1.11185 1.09797 1.15081 1.21316 0.99962 0.95744 0.93344 1.22114 1.01237 0.95015 0.98386 1.20878 0.96116 0.94302 0.86823 1.44030 1.66807 1.05057 1.15499 1.19158 1.19109 1.14402 0.85595 0.91807 1.25040 0.97083 1.00412 0.97068 1.70024 1.27916 1.37486 1.19266 0.86328 0.81287 0.77630 0.81711 1.21416 1.21551 1.20504 1.20766 0.96369 0.83709 0.94581 1.22264 1.01021 0.97988 0.96131 0.92141 0.91075 0.93055 0.76516 0.88467 0.88521 0.90453 0.89486 0.89039 0.87834 0.76514 0.76725 0.91490 0.91706 0.93823 0.96721 0.92924 0.93630 0.96539 0.89452 0.93207 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.78 37.16 0.33 -1.85 16 2 C 0.14 1.94 2.40 -67.93 -0.16 1.78 16 3 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 4 N -0.72 -7.78 5.00 -53.81 -0.27 -8.05 16 5 C 0.51 5.70 7.79 -10.98 -0.09 5.61 16 6 O -0.54 -8.49 15.65 5.55 0.09 -8.40 16 7 C -0.14 -0.87 5.70 -27.89 -0.16 -1.03 16 8 C -0.12 -0.85 4.71 -26.73 -0.13 -0.98 16 9 C 0.13 0.60 6.55 -4.04 -0.03 0.57 16 10 N -0.38 -2.93 3.69 -62.62 -0.23 -3.16 16 11 C 0.25 1.73 12.63 -90.66 -1.14 0.58 16 12 N -0.55 -5.22 11.19 -15.83 -0.18 -5.40 16 13 C 0.20 1.79 13.03 -91.82 -1.20 0.59 16 14 N -0.31 -3.26 12.56 29.29 0.37 -2.90 16 15 C -0.08 -1.27 2.14 -90.58 -0.19 -1.47 16 16 C -0.13 -1.94 4.81 -26.62 -0.13 -2.07 16 17 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 18 N -0.59 -14.20 2.99 -172.32 -0.52 -14.72 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 20 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 23 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 28 C -0.13 -2.41 4.97 -26.61 -0.13 -2.55 16 29 H 0.06 0.78 6.46 -51.93 -0.34 0.45 16 30 H 0.07 0.99 6.46 -51.93 -0.34 0.65 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.40 3.41 6.84 -40.82 -0.28 3.13 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.14 8.09 -51.93 -0.42 -0.28 16 39 H 0.22 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 43 H 0.04 0.52 6.46 -51.93 -0.34 0.18 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.01 7.93 -51.92 -0.41 0.60 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.06 1.12 6.51 -51.93 -0.34 0.79 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -35.30 395.57 -10.61 -45.91 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.12 Total: 0.61 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.30 Total: -1.00 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.20 Total: -59.38 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.30 -10.61 -45.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677367603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.575 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds