Wall clock time and date at job start Wed Apr 1 2020 01:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 N 1.46499 * 109.46727 * 239.99927 * 2 1 3 5 5 C 1.34778 * 120.00032 * 85.00307 * 4 2 1 6 6 O 1.21285 * 119.99745 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00378 * 179.97438 * 5 4 2 8 8 C 1.52993 * 109.47182 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46979 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47074 * 180.02562 * 9 8 7 11 11 C 1.34432 * 126.82562 * 124.99804 * 10 9 8 12 12 N 1.30827 * 108.07893 * 179.97438 * 11 10 9 13 13 C 1.33237 * 109.83108 * 0.02562 * 12 11 10 14 14 N 1.30713 * 108.94662 * 0.25928 * 13 12 11 15 15 C 1.52996 * 109.46815 * 120.00366 * 2 1 3 16 16 C 1.53035 * 109.46497 * 60.06533 * 15 2 1 17 17 C 1.53185 * 109.31549 * 178.60946 * 16 15 2 18 18 N 1.46927 * 108.77319 * 54.63826 * 17 16 15 19 19 C 1.36935 * 120.63283 * 126.41259 * 18 17 16 20 20 H 1.07999 * 120.00168 * 331.80941 * 19 18 17 21 21 C 1.38817 * 120.00187 * 151.80782 * 19 18 17 22 22 N 1.31614 * 120.00058 * 343.08463 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 163.07953 * 21 19 18 24 24 H 1.48498 * 109.47173 * 90.00470 * 23 21 19 25 25 H 1.48500 * 109.47068 * 210.00147 * 23 21 19 26 26 H 1.48499 * 109.47224 * 330.00309 * 23 21 19 27 27 C 1.46932 * 118.73885 * 306.38910 * 18 17 16 28 28 C 1.53045 * 109.46147 * 299.99458 * 15 2 1 29 29 H 1.08995 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46893 * 300.00211 * 1 2 3 31 31 H 1.09000 * 109.47135 * 59.99610 * 1 2 3 32 32 H 0.96999 * 120.00418 * 264.99854 * 4 2 1 33 33 H 1.09001 * 109.47021 * 59.99839 * 7 5 4 34 34 H 1.09003 * 109.46797 * 299.99726 * 7 5 4 35 35 H 1.09001 * 109.47283 * 59.99988 * 8 7 5 36 36 H 1.08999 * 109.47800 * 300.00033 * 8 7 5 37 37 H 1.08999 * 109.47255 * 60.00416 * 9 8 7 38 38 H 1.09003 * 109.46896 * 299.99651 * 9 8 7 39 39 H 1.08006 * 125.95473 * 359.97438 * 11 10 9 40 40 H 1.08002 * 125.53099 * 179.97438 * 13 12 11 41 41 H 1.09007 * 109.45477 * 180.02562 * 15 2 1 42 42 H 1.08998 * 109.49844 * 298.56705 * 16 15 2 43 43 H 1.09003 * 109.49716 * 58.66249 * 16 15 2 44 44 H 1.09000 * 109.59040 * 294.85254 * 17 16 15 45 45 H 1.09008 * 109.70660 * 174.49042 * 17 16 15 46 46 H 0.97001 * 120.00467 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58453 * 293.81991 * 27 18 17 48 48 H 1.09002 * 109.58645 * 173.39544 * 27 18 17 49 49 H 1.09000 * 109.49977 * 301.34336 * 28 15 2 50 50 H 1.09006 * 109.49475 * 61.40169 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5875 8 6 2.7017 0.2548 -4.7585 9 6 3.2116 -0.4665 -6.0079 10 7 3.2620 0.4751 -7.1290 11 6 4.3283 0.7564 -7.8978 12 7 3.9649 1.6448 -8.7868 13 6 2.6800 1.9541 -8.6176 14 7 2.2073 1.2678 -7.6106 15 6 2.0399 -0.7213 1.2492 16 6 1.5311 -2.1646 1.2481 17 6 2.0719 -2.8935 2.4821 18 7 1.7085 -2.1265 3.6814 19 6 1.0455 -2.7260 4.7187 20 1 0.3979 -3.5696 4.5301 21 6 1.2055 -2.2496 6.0127 22 7 2.2196 -1.4627 6.3035 23 14 -0.0185 -2.7254 7.3412 24 1 0.4356 -3.9714 8.0094 25 1 -0.1120 -1.6327 8.3425 26 1 -1.3521 -2.9503 6.7280 27 6 2.0706 -0.7040 3.7469 28 6 1.5297 0.0003 2.4987 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 1.9775 -1.5508 -3.8326 34 1 3.6491 -1.1203 -3.3980 35 1 3.3742 1.0768 -4.5132 36 1 1.7027 0.6471 -4.9483 37 1 2.5387 -1.2882 -6.2531 38 1 4.2107 -0.8591 -5.8184 39 1 5.3132 0.3243 -7.7987 40 1 2.1210 2.6609 -9.2129 41 1 3.1300 -0.7208 1.2492 42 1 0.4414 -2.1661 1.2731 43 1 1.8754 -2.6711 0.3464 44 1 3.1569 -2.9723 2.4136 45 1 1.6360 -3.8909 2.5403 46 1 2.3313 -1.1295 7.2076 47 1 3.1555 -0.6043 3.7816 48 1 1.6317 -0.2559 4.6383 49 1 1.8731 1.0348 2.4871 50 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677367603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:11 Heat of formation + Delta-G solvation = 38.026355 kcal Electronic energy + Delta-G solvation = -28465.900950 eV Core-core repulsion = 24529.222008 eV Total energy + Delta-G solvation = -3936.678942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.93833 -41.10330 -39.52875 -36.95692 -36.33875 -34.46061 -33.32278 -32.59836 -32.13430 -31.41538 -30.36265 -28.14669 -27.12341 -25.12060 -24.17337 -23.72919 -22.87771 -22.32943 -21.85801 -21.15036 -20.13473 -18.71640 -18.44366 -17.68169 -17.24490 -16.93067 -16.57887 -16.46112 -15.89490 -15.72886 -15.51047 -15.33415 -15.25895 -14.91969 -14.76128 -14.60380 -14.13020 -14.08268 -13.85839 -13.51689 -13.31101 -13.03008 -12.95425 -12.90824 -12.73145 -12.62797 -12.53517 -12.43719 -12.14836 -11.95688 -11.81083 -11.65166 -11.59331 -11.18569 -10.99413 -10.95743 -10.83018 -10.77288 -10.57332 -10.50452 -10.03796 -8.64732 -7.86058 -5.30696 0.73865 1.46000 1.48243 1.48359 1.57215 1.72002 2.03873 2.27600 2.52083 3.28832 3.52472 3.56500 3.71198 3.72697 3.85010 3.88972 3.91702 4.07375 4.15537 4.16811 4.35219 4.39562 4.43595 4.50590 4.56200 4.61862 4.63372 4.71588 4.75662 4.81517 4.94204 4.98288 5.03355 5.05439 5.19301 5.23899 5.25140 5.29817 5.33717 5.34246 5.45373 5.49447 5.58872 5.59487 5.68503 5.81658 5.99158 6.41215 6.65176 7.15427 7.17138 7.35171 7.90121 8.40823 9.20011 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.001678 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.491276 B =16686.164791 C =16827.644992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.063 0.937 4 N -0.712 5.712 5 C 0.504 3.496 6 O -0.595 6.595 7 C -0.127 4.127 8 C -0.108 4.108 9 C 0.127 3.873 10 N -0.382 5.382 11 C 0.259 3.741 12 N -0.584 5.584 13 C 0.187 3.813 14 N -0.357 5.357 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.139 3.861 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.271 1.271 27 C 0.178 3.822 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.415 0.585 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.264 0.736 40 H 0.233 0.767 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.248 0.752 47 H -0.007 1.007 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -1.973 -27.116 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.081 0.919 4 N -0.365 5.365 5 C 0.293 3.707 6 O -0.476 6.476 7 C -0.167 4.167 8 C -0.147 4.147 9 C 0.007 3.993 10 N -0.173 5.173 11 C -0.037 4.037 12 N -0.312 5.312 13 C -0.116 4.116 14 N -0.185 5.185 15 C -0.092 4.092 16 C -0.153 4.153 17 C 0.013 3.987 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.052 3.948 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.253 0.747 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.167 0.833 39 H 0.279 0.721 40 H 0.250 0.750 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.012 0.988 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.465 -0.991 -26.923 27.163 hybrid contribution -0.352 -0.156 1.556 1.603 sum 3.112 -1.147 -25.367 25.583 Atomic orbital electron populations 1.22157 0.95296 1.02635 1.01359 1.20738 0.94110 0.96004 0.83974 0.91863 1.46108 1.66601 1.14800 1.08994 1.21426 0.76625 0.86926 0.85754 1.90715 1.52310 1.18714 1.85849 1.21618 1.06132 0.99164 0.89777 1.21415 1.01834 0.98141 0.93273 1.22201 1.06877 0.89098 0.81149 1.50766 1.07468 1.32415 1.26656 1.26975 0.96078 0.93386 0.87268 1.70533 1.14014 1.18727 1.27962 1.26478 0.90877 0.99377 0.94872 1.78007 1.13240 1.11228 1.16040 1.21148 0.99808 0.95670 0.92582 1.21970 1.00843 0.94497 0.98006 1.21095 0.96261 0.94567 0.86737 1.44303 1.66939 1.05750 1.16360 1.19510 1.18892 1.14092 0.86490 0.91528 1.25768 0.98693 1.01084 0.99179 1.70178 1.29686 1.39114 1.19249 0.85346 0.79539 0.76944 0.79046 1.21128 1.22180 1.19550 1.20540 0.94749 0.84006 0.95464 1.22064 1.00618 0.98306 0.95339 0.91171 0.91985 0.93669 0.74708 0.85414 0.84685 0.92914 0.93289 0.87601 0.83319 0.72088 0.75045 0.91493 0.92048 0.89259 0.96791 0.92718 0.94258 0.98846 0.93251 0.92296 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 8.78 71.98 0.63 -3.33 16 2 C 0.16 3.93 2.40 44.99 0.11 4.03 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 N -0.71 -13.10 5.00 -442.54 -2.21 -15.31 16 5 C 0.50 10.10 7.79 87.66 0.68 10.78 16 6 O -0.60 -18.49 15.65 -3.04 -0.05 -18.54 16 7 C -0.13 -1.07 5.70 29.85 0.17 -0.90 16 8 C -0.11 -1.39 4.71 30.59 0.14 -1.25 16 9 C 0.13 0.75 6.55 86.38 0.57 1.31 16 10 N -0.38 -5.21 3.69 -352.04 -1.30 -6.51 16 11 C 0.26 2.93 12.63 180.36 2.28 5.21 16 12 N -0.58 -10.54 11.19 -204.00 -2.28 -12.82 16 13 C 0.19 3.42 13.03 180.77 2.36 5.77 16 14 N -0.36 -7.37 12.56 -61.25 -0.77 -8.14 16 15 C -0.07 -2.06 2.14 -10.77 -0.02 -2.09 16 16 C -0.11 -3.11 4.81 30.67 0.15 -2.96 16 17 C 0.14 5.17 6.52 86.36 0.56 5.73 16 18 N -0.61 -29.38 2.99 -699.09 -2.09 -31.48 16 19 C -0.26 -13.95 9.58 84.03 0.81 -13.14 16 20 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 21 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 22 N -0.94 -55.15 11.20 21.65 0.24 -54.90 16 23 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.18 8.40 5.30 86.36 0.46 8.86 16 28 C -0.12 -4.43 4.97 30.67 0.15 -4.28 16 29 H 0.07 1.64 6.46 -2.39 -0.02 1.62 16 30 H 0.06 1.67 6.46 -2.39 -0.02 1.66 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.41 5.05 6.84 -92.71 -0.63 4.42 16 33 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.15 -0.45 8.09 -2.39 -0.02 -0.47 16 39 H 0.26 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.23 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.06 1.77 6.51 -2.39 -0.02 1.75 16 43 H 0.09 1.65 6.46 -2.39 -0.02 1.64 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 2.00 7.93 -2.38 -0.02 1.98 16 46 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 47 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 49 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.06 2.13 6.51 -2.38 -0.02 2.12 16 Total: -1.00 -82.83 395.57 3.33 -79.50 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.30 Total: 10.43 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 9.46 Total: 11.30 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -8.41 Total: -129.17 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -82.83 3.33 -79.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677367603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.525 kcal (2) G-P(sol) polarization free energy of solvation -82.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds