Wall clock time and date at job start Wed Apr 1 2020 01:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47032 * 2 1 4 4 C 1.53001 * 109.46704 * 240.00170 * 2 1 3 5 5 C 1.50702 * 109.47568 * 65.00444 * 4 2 1 6 6 C 1.34661 * 126.59462 * 85.01531 * 5 4 2 7 7 N 1.34123 * 108.02187 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25677 * 0.02562 * 7 6 5 9 9 N 1.35041 * 108.69771 * 359.76420 * 8 7 6 10 10 H 0.96996 * 126.40060 * 180.26986 * 9 8 7 11 11 C 1.50695 * 109.47002 * 120.00368 * 2 1 3 12 12 O 1.21275 * 120.00103 * 119.99840 * 11 2 1 13 13 N 1.34775 * 119.99795 * 299.99783 * 11 2 1 14 14 C 1.46498 * 120.00107 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.47542 * 179.97438 * 14 13 11 16 16 N 1.46899 * 109.47218 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99712 * 170.00213 * 16 15 14 18 18 C 1.53237 * 109.33805 * 172.74361 * 17 16 15 19 19 N 1.47079 * 108.52132 * 53.83315 * 18 17 16 20 20 C 1.36941 * 120.88448 * 128.78817 * 19 18 17 21 21 H 1.07997 * 119.99918 * 206.58402 * 20 19 18 22 22 C 1.38807 * 119.99583 * 26.58782 * 20 19 18 23 23 N 1.31618 * 120.00188 * 17.02141 * 22 20 19 24 24 Si 1.86799 * 119.99686 * 197.01988 * 22 20 19 25 25 H 1.48497 * 109.47556 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47149 * 120.00406 * 24 22 20 27 27 H 1.48503 * 109.47120 * 239.99923 * 24 22 20 28 28 C 1.47083 * 118.23330 * 308.81493 * 19 18 17 29 29 C 1.46891 * 110.99901 * 45.70069 * 16 15 14 30 30 H 1.08999 * 109.47595 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47082 * 300.00176 * 1 2 3 32 32 H 1.09003 * 109.46926 * 59.99652 * 1 2 3 33 33 H 1.09010 * 109.46622 * 185.00078 * 4 2 1 34 34 H 1.08996 * 109.47371 * 304.99419 * 4 2 1 35 35 H 1.08001 * 125.99103 * 359.97197 * 6 5 4 36 36 H 1.08001 * 125.64964 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00420 * 359.97438 * 13 11 2 38 38 H 1.09008 * 109.47306 * 60.00001 * 14 13 11 39 39 H 1.08994 * 109.47165 * 300.00070 * 14 13 11 40 40 H 1.09008 * 109.46529 * 59.99881 * 15 14 13 41 41 H 1.08994 * 109.47237 * 300.00381 * 15 14 13 42 42 H 1.09004 * 109.49329 * 52.78786 * 17 16 15 43 43 H 1.08999 * 109.49244 * 292.70731 * 17 16 15 44 44 H 1.09002 * 109.62613 * 173.53722 * 18 17 16 45 45 H 1.08998 * 109.63440 * 293.92450 * 18 17 16 46 46 H 0.97006 * 119.99914 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.62421 * 170.89529 * 28 19 18 48 48 H 1.09004 * 109.62775 * 291.46820 * 28 19 18 49 49 H 1.09002 * 109.49547 * 67.29328 * 29 16 15 50 50 H 1.08990 * 109.49859 * 307.21082 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 6 2.3074 1.0926 -3.0220 7 7 1.6244 1.5036 -4.1006 8 6 0.5599 0.7623 -4.2442 9 7 0.5351 -0.1559 -3.2543 10 1 -0.1409 -0.8381 -3.1188 11 6 2.0323 -0.7105 1.2304 12 8 2.7295 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1954 -0.9403 3.6506 15 6 1.6859 -0.2188 4.8999 16 7 2.1755 -0.9114 6.0993 17 6 1.9091 -0.1215 7.3089 18 6 2.2672 -0.9517 8.5462 19 7 3.6522 -1.4261 8.4057 20 6 4.5649 -1.2377 9.4091 21 1 5.6181 -1.1790 9.1772 22 6 4.1364 -1.1224 10.7243 23 7 2.9270 -1.5189 11.0596 24 14 5.2762 -0.4043 12.0184 25 1 6.5703 -0.0372 11.3895 26 1 4.6528 0.8066 12.6102 27 1 5.5114 -1.4111 13.0844 28 6 4.0312 -2.1076 7.1586 29 6 3.6037 -1.2320 5.9760 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 3.2299 1.5178 -2.6551 36 1 -0.1766 0.8635 -5.0275 37 1 1.1494 0.5389 2.5436 38 1 3.2855 -0.9399 3.6505 39 1 1.8325 -1.9681 3.6508 40 1 0.5958 -0.2189 4.9002 41 1 2.0491 0.8088 4.8996 42 1 0.8530 0.1459 7.3435 43 1 2.5139 0.7852 7.2917 44 1 2.1808 -0.3332 9.4396 45 1 1.5915 -1.8034 8.6238 46 1 2.6277 -1.4386 11.9789 47 1 5.1112 -2.2534 7.1348 48 1 3.5273 -3.0724 7.1010 49 1 4.1849 -0.3098 5.9773 50 1 3.7766 -1.7699 5.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690079754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:49 Heat of formation + Delta-G solvation = 49.166218 kcal Electronic energy + Delta-G solvation = -28367.050155 eV Core-core repulsion = 24430.854274 eV Total energy + Delta-G solvation = -3936.195881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.46934 -40.16498 -38.34313 -35.71224 -35.27540 -34.00438 -32.77820 -31.44406 -30.64811 -30.07768 -28.60514 -26.85245 -26.09938 -24.05894 -23.39109 -22.45320 -21.94875 -21.28727 -21.12499 -20.14140 -19.11604 -18.32368 -17.24835 -16.90779 -16.28463 -15.95127 -15.40700 -15.16612 -15.01720 -14.63215 -14.50701 -14.37614 -13.97900 -13.93452 -13.73969 -13.56722 -13.37141 -13.26264 -13.00073 -12.96246 -12.62197 -12.46232 -11.84908 -11.67699 -11.62193 -11.41734 -11.35528 -11.05532 -10.74867 -10.47591 -10.40049 -10.36007 -10.31852 -10.09958 -10.00706 -9.76120 -9.62813 -9.20444 -8.75686 -8.52217 -7.90324 -6.67961 -5.79291 -3.20212 1.60972 2.40758 2.66430 2.77574 2.95526 3.36220 3.44291 3.46537 4.14008 4.30927 4.36875 4.41299 4.45177 4.50202 4.66588 4.80406 4.87114 4.99917 5.08405 5.10494 5.19929 5.21903 5.35569 5.38118 5.40665 5.47001 5.57466 5.62374 5.79100 5.87371 5.87960 5.90048 5.98016 6.11159 6.19877 6.20988 6.32392 6.34636 6.50764 6.66640 6.91927 6.94361 7.20379 7.25209 7.51088 7.60142 7.66899 7.66961 7.80250 7.98955 8.42316 9.20325 9.83654 10.42039 11.29672 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037931 B = 0.001649 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.999038 B =16974.307834 C =17134.519574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.026 4.026 5 C -0.016 4.016 6 C -0.024 4.024 7 N -0.494 5.494 8 C 0.180 3.820 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.517 3.483 12 O -0.538 6.538 13 N -0.727 5.727 14 C 0.114 3.886 15 C 0.044 3.956 16 N -0.528 5.528 17 C 0.037 3.963 18 C 0.178 3.822 19 N -0.595 5.595 20 C -0.251 4.251 21 H 0.067 0.933 22 C 0.000 4.000 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.148 3.852 29 C 0.035 3.965 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.207 0.793 37 H 0.399 0.601 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.253 0.747 47 H 0.056 0.944 48 H 0.026 0.974 49 H 0.028 0.972 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 4.828 -26.956 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.121 0.879 4 C -0.065 4.065 5 C -0.132 4.132 6 C -0.172 4.172 7 N -0.213 5.213 8 C -0.104 4.104 9 N -0.170 5.170 10 H 0.256 0.744 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.379 5.379 14 C -0.009 4.009 15 C -0.085 4.085 16 N -0.253 5.253 17 C -0.092 4.092 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.380 4.380 21 H 0.084 0.916 22 C -0.198 4.198 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.021 3.979 29 C -0.095 4.095 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.044 0.956 49 H 0.047 0.953 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.713 4.348 -27.312 28.996 hybrid contribution -0.015 0.613 1.270 1.411 sum -8.728 4.961 -26.042 27.910 Atomic orbital electron populations 1.21813 0.92931 1.02677 1.02839 1.21319 0.97623 1.01302 0.92533 0.87883 1.19851 1.02895 0.97010 0.86748 1.21246 0.91219 1.02550 0.98152 1.22148 1.02012 0.97697 0.95306 1.70298 1.05492 1.26920 1.18563 1.24980 0.99909 0.90227 0.95239 1.43358 1.21493 1.28793 1.23396 0.74360 1.20493 0.80188 0.84607 0.84475 1.90733 1.37699 1.26200 1.86773 1.45991 1.53837 1.32131 1.05895 1.21591 0.99697 0.96989 0.82618 1.22254 1.00464 0.95624 0.90121 1.62036 1.17549 1.44572 1.01177 1.22923 0.99003 0.95558 0.91754 1.20859 0.85013 0.95841 0.93139 1.44133 1.08410 1.64987 1.14350 1.19248 0.89310 1.43708 0.85777 0.91565 1.25022 0.97035 1.00718 0.97009 1.70039 1.18457 1.48883 1.17464 0.86226 0.80230 0.78649 0.81700 1.20312 1.21607 1.21699 1.20989 0.97624 0.93487 0.85765 1.22796 0.87254 0.99340 1.00081 0.92004 0.91690 0.91736 0.88345 0.90325 0.81387 0.77685 0.76709 0.90814 0.90431 0.90716 0.94950 0.92068 0.95551 0.89270 0.95489 0.93678 0.92546 0.95561 0.95327 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.90 37.16 0.33 -0.39 16 2 C -0.11 -0.69 2.71 -91.77 -0.25 -0.94 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.03 -0.18 4.59 -27.88 -0.13 -0.31 16 5 C -0.02 -0.11 5.57 -81.60 -0.45 -0.56 16 6 C -0.02 -0.21 11.79 -17.82 -0.21 -0.42 16 7 N -0.49 -4.76 11.25 -14.67 -0.17 -4.93 16 8 C 0.18 1.11 13.04 -90.38 -1.18 -0.07 16 9 N -0.57 -2.80 5.79 -10.30 -0.06 -2.86 16 10 H 0.42 0.89 8.96 -40.82 -0.37 0.52 16 11 C 0.52 5.19 7.15 -10.99 -0.08 5.11 16 12 O -0.54 -7.61 15.92 5.56 0.09 -7.53 16 13 N -0.73 -6.67 5.45 -60.30 -0.33 -7.00 16 14 C 0.11 1.37 4.92 -4.04 -0.02 1.35 16 15 C 0.04 0.56 5.38 -3.82 -0.02 0.54 16 16 N -0.53 -9.01 4.78 -234.33 -1.12 -10.13 16 17 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 18 C 0.18 4.24 5.42 -3.60 -0.02 4.22 16 19 N -0.60 -15.07 3.04 -172.01 -0.52 -15.59 16 20 C -0.25 -6.91 9.63 -15.06 -0.15 -7.06 16 21 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 22 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 23 N -0.90 -26.17 11.15 55.49 0.62 -25.55 16 24 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.15 3.17 6.69 -3.60 -0.02 3.14 16 29 C 0.03 0.61 5.04 -3.71 -0.02 0.59 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 32 H 0.06 0.30 7.08 -51.93 -0.37 -0.07 16 33 H 0.10 0.78 7.96 -51.92 -0.41 0.36 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.21 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.40 2.59 7.89 -40.82 -0.32 2.27 16 38 H 0.07 0.99 6.18 -51.92 -0.32 0.67 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 42 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.35 6.12 -51.93 -0.32 2.04 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.07 1.08 5.73 -51.93 -0.30 0.79 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -34.72 396.87 -11.11 -45.83 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.25 Total: -0.63 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.32 Total: 5.80 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -1.58 Total: -66.06 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.72 -11.11 -45.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.991 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds