Wall clock time and date at job start Wed Apr 1 2020 01:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47032 * 2 1 4 4 C 1.53001 * 109.46704 * 240.00170 * 2 1 3 5 5 C 1.50702 * 109.47568 * 65.00444 * 4 2 1 6 6 C 1.34661 * 126.59462 * 85.01531 * 5 4 2 7 7 N 1.34123 * 108.02187 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25677 * 0.02562 * 7 6 5 9 9 N 1.35041 * 108.69771 * 359.76420 * 8 7 6 10 10 H 0.96996 * 126.40060 * 180.26986 * 9 8 7 11 11 C 1.50695 * 109.47002 * 120.00368 * 2 1 3 12 12 O 1.21275 * 120.00103 * 119.99840 * 11 2 1 13 13 N 1.34775 * 119.99795 * 299.99783 * 11 2 1 14 14 C 1.46498 * 120.00107 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.47542 * 179.97438 * 14 13 11 16 16 N 1.46899 * 109.47218 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99712 * 170.00213 * 16 15 14 18 18 C 1.53237 * 109.33805 * 172.74361 * 17 16 15 19 19 N 1.47079 * 108.52132 * 53.83315 * 18 17 16 20 20 C 1.36941 * 120.88448 * 128.78817 * 19 18 17 21 21 H 1.07997 * 119.99918 * 206.58402 * 20 19 18 22 22 C 1.38807 * 119.99583 * 26.58782 * 20 19 18 23 23 N 1.31618 * 120.00188 * 17.02141 * 22 20 19 24 24 Si 1.86799 * 119.99686 * 197.01988 * 22 20 19 25 25 H 1.48497 * 109.47556 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47149 * 120.00406 * 24 22 20 27 27 H 1.48503 * 109.47120 * 239.99923 * 24 22 20 28 28 C 1.47083 * 118.23330 * 308.81493 * 19 18 17 29 29 C 1.46891 * 110.99901 * 45.70069 * 16 15 14 30 30 H 1.08999 * 109.47595 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47082 * 300.00176 * 1 2 3 32 32 H 1.09003 * 109.46926 * 59.99652 * 1 2 3 33 33 H 1.09010 * 109.46622 * 185.00078 * 4 2 1 34 34 H 1.08996 * 109.47371 * 304.99419 * 4 2 1 35 35 H 1.08001 * 125.99103 * 359.97197 * 6 5 4 36 36 H 1.08001 * 125.64964 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00420 * 359.97438 * 13 11 2 38 38 H 1.09008 * 109.47306 * 60.00001 * 14 13 11 39 39 H 1.08994 * 109.47165 * 300.00070 * 14 13 11 40 40 H 1.09008 * 109.46529 * 59.99881 * 15 14 13 41 41 H 1.08994 * 109.47237 * 300.00381 * 15 14 13 42 42 H 1.09004 * 109.49329 * 52.78786 * 17 16 15 43 43 H 1.08999 * 109.49244 * 292.70731 * 17 16 15 44 44 H 1.09002 * 109.62613 * 173.53722 * 18 17 16 45 45 H 1.08998 * 109.63440 * 293.92450 * 18 17 16 46 46 H 0.97006 * 119.99914 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.62421 * 170.89529 * 28 19 18 48 48 H 1.09004 * 109.62775 * 291.46820 * 28 19 18 49 49 H 1.09002 * 109.49547 * 67.29328 * 29 16 15 50 50 H 1.08990 * 109.49859 * 307.21082 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 6 2.3074 1.0926 -3.0220 7 7 1.6244 1.5036 -4.1006 8 6 0.5599 0.7623 -4.2442 9 7 0.5351 -0.1559 -3.2543 10 1 -0.1409 -0.8381 -3.1188 11 6 2.0323 -0.7105 1.2304 12 8 2.7295 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1954 -0.9403 3.6506 15 6 1.6859 -0.2188 4.8999 16 7 2.1755 -0.9114 6.0993 17 6 1.9091 -0.1215 7.3089 18 6 2.2672 -0.9517 8.5462 19 7 3.6522 -1.4261 8.4057 20 6 4.5649 -1.2377 9.4091 21 1 5.6181 -1.1790 9.1772 22 6 4.1364 -1.1224 10.7243 23 7 2.9270 -1.5189 11.0596 24 14 5.2762 -0.4043 12.0184 25 1 6.5703 -0.0372 11.3895 26 1 4.6528 0.8066 12.6102 27 1 5.5114 -1.4111 13.0844 28 6 4.0312 -2.1076 7.1586 29 6 3.6037 -1.2320 5.9760 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 3.2299 1.5178 -2.6551 36 1 -0.1766 0.8635 -5.0275 37 1 1.1494 0.5389 2.5436 38 1 3.2855 -0.9399 3.6505 39 1 1.8325 -1.9681 3.6508 40 1 0.5958 -0.2189 4.9002 41 1 2.0491 0.8088 4.8996 42 1 0.8530 0.1459 7.3435 43 1 2.5139 0.7852 7.2917 44 1 2.1808 -0.3332 9.4396 45 1 1.5915 -1.8034 8.6238 46 1 2.6277 -1.4386 11.9789 47 1 5.1112 -2.2534 7.1348 48 1 3.5273 -3.0724 7.1010 49 1 4.1849 -0.3098 5.9773 50 1 3.7766 -1.7699 5.0440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690079754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:42 Heat of formation + Delta-G solvation = 24.420317 kcal Electronic energy + Delta-G solvation = -28368.123218 eV Core-core repulsion = 24430.854274 eV Total energy + Delta-G solvation = -3937.268944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 10.47 seconds Orbital eigenvalues (eV) -42.97017 -41.00309 -39.79379 -36.96476 -36.00692 -35.39594 -33.34813 -33.21336 -31.87254 -31.11891 -29.90830 -27.68269 -27.33360 -25.40320 -24.54809 -24.01900 -22.52827 -22.41591 -21.74836 -20.95838 -20.70054 -18.84929 -18.73151 -17.93560 -17.34920 -16.88859 -16.76429 -16.15545 -16.01016 -15.84676 -15.58450 -15.34572 -15.28271 -15.11412 -14.88535 -14.74179 -14.54265 -14.31209 -14.03699 -13.76144 -13.50428 -13.17812 -13.15542 -13.02544 -12.97444 -12.63120 -12.41900 -12.29645 -12.26046 -12.12769 -12.03082 -11.91003 -11.51404 -11.43375 -10.93794 -10.91613 -10.82681 -10.60071 -10.10314 -9.30081 -9.28614 -8.69270 -7.88740 -5.33278 1.11709 1.45516 1.47231 1.58012 1.62492 2.03608 2.24780 2.35118 2.50149 3.07235 3.26902 3.59941 3.66927 3.79609 3.84146 3.89131 3.98938 4.07025 4.23349 4.28483 4.32730 4.34047 4.43860 4.47652 4.56162 4.62515 4.65425 4.69193 4.72201 4.80482 4.85141 4.87415 4.93287 4.94688 5.03386 5.09220 5.17796 5.20072 5.35432 5.37703 5.40161 5.60622 5.68778 5.80829 6.11973 6.21225 6.36565 6.53168 6.60079 7.12710 7.17282 7.23701 7.82855 8.36935 9.18238 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037931 B = 0.001649 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.999038 B =16974.307834 C =17134.519574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.116 0.884 4 C -0.020 4.020 5 C -0.011 4.011 6 C -0.049 4.049 7 N -0.540 5.540 8 C 0.189 3.811 9 N -0.555 5.555 10 H 0.434 0.566 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.714 5.714 14 C 0.124 3.876 15 C 0.052 3.948 16 N -0.540 5.540 17 C 0.053 3.947 18 C 0.183 3.817 19 N -0.614 5.614 20 C -0.264 4.264 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.292 1.292 28 C 0.142 3.858 29 C 0.049 3.951 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.241 0.759 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.058 0.942 45 H -0.001 1.001 46 H 0.251 0.749 47 H 0.058 0.942 48 H 0.015 0.985 49 H 0.025 0.975 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 6.072 -28.716 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.134 0.866 4 C -0.059 4.059 5 C -0.127 4.127 6 C -0.196 4.196 7 N -0.260 5.260 8 C -0.095 4.095 9 N -0.160 5.160 10 H 0.274 0.726 11 C 0.303 3.697 12 O -0.462 6.462 13 N -0.367 5.367 14 C 0.000 4.000 15 C -0.076 4.076 16 N -0.266 5.266 17 C -0.076 4.076 18 C 0.057 3.943 19 N -0.338 5.338 20 C -0.394 4.394 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.797 3.203 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.219 1.219 28 C 0.016 3.984 29 C -0.080 4.080 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.257 0.743 37 H 0.253 0.747 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.017 0.983 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.043 0.957 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.914 5.608 -29.101 31.251 hybrid contribution 0.326 0.158 1.742 1.780 sum -9.588 5.765 -27.359 29.558 Atomic orbital electron populations 1.21802 0.91231 1.02945 1.03822 1.21276 0.98801 1.01197 0.90358 0.86579 1.19740 1.02063 0.97035 0.87073 1.21084 0.91611 1.01925 0.98090 1.22310 1.02656 0.98784 0.95896 1.70267 1.07222 1.28879 1.19600 1.25650 0.99349 0.89106 0.95406 1.43311 1.21209 1.28835 1.22643 0.72572 1.21084 0.79226 0.83989 0.85354 1.90720 1.39754 1.28332 1.87386 1.45827 1.53640 1.32355 1.04893 1.21290 0.98785 0.96502 0.83425 1.22253 1.01558 0.95695 0.88063 1.61925 1.16999 1.45383 1.02263 1.22584 1.00388 0.94187 0.90411 1.20649 0.84106 0.94879 0.94665 1.44415 1.08564 1.65789 1.15061 1.19565 0.89855 1.43311 0.86717 0.91607 1.25782 0.98559 1.01344 0.98910 1.70193 1.20160 1.50152 1.17622 0.85192 0.78705 0.77552 0.78890 1.19260 1.21432 1.21918 1.21136 0.97774 0.93616 0.85836 1.22571 0.87802 0.98583 0.99031 0.92101 0.90488 0.90983 0.89774 0.90429 0.81460 0.74265 0.74740 0.92236 0.91896 0.88580 0.93614 0.89439 0.95862 0.92324 0.98306 0.94012 0.92371 0.96689 0.95667 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.90 71.98 0.64 -0.34 16 2 C -0.09 -1.05 2.71 -11.54 -0.03 -1.08 16 3 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.02 -0.25 4.59 29.85 0.14 -0.12 16 5 C -0.01 -0.13 5.57 40.95 0.23 0.10 16 6 C -0.05 -0.83 11.79 83.52 0.98 0.16 16 7 N -0.54 -9.88 11.25 -200.32 -2.25 -12.13 16 8 C 0.19 1.90 13.04 180.26 2.35 4.25 16 9 N -0.56 -4.24 5.79 -186.50 -1.08 -5.32 16 10 H 0.43 0.64 8.96 -92.71 -0.83 -0.19 16 11 C 0.52 9.50 7.15 87.66 0.63 10.13 16 12 O -0.58 -16.16 15.92 -3.01 -0.05 -16.21 16 13 N -0.71 -11.30 5.45 -463.07 -2.52 -13.83 16 14 C 0.12 2.71 4.92 86.38 0.43 3.14 16 15 C 0.05 1.17 5.38 86.30 0.46 1.63 16 16 N -0.54 -17.50 4.78 -895.28 -4.28 -21.78 16 17 C 0.05 1.96 5.58 86.38 0.48 2.44 16 18 C 0.18 8.92 5.42 86.35 0.47 9.39 16 19 N -0.61 -31.63 3.04 -698.12 -2.12 -33.75 16 20 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 21 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 22 C -0.05 -2.85 4.93 84.86 0.42 -2.43 16 23 N -0.94 -55.58 11.15 21.65 0.24 -55.34 16 24 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 C 0.14 6.12 6.69 86.35 0.58 6.70 16 29 C 0.05 1.69 5.04 86.38 0.44 2.13 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.38 7.56 -2.39 -0.02 0.36 16 32 H 0.07 0.44 7.08 -2.39 -0.02 0.42 16 33 H 0.08 1.32 7.96 -2.38 -0.02 1.30 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.24 0.36 8.06 -2.91 -0.02 0.34 16 37 H 0.42 3.90 7.89 -92.71 -0.73 3.17 16 38 H 0.06 1.49 6.18 -2.38 -0.01 1.48 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 42 H 0.09 2.74 8.11 -2.38 -0.02 2.72 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 3.19 6.12 -2.39 -0.01 3.18 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 47 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 48 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 2.76 5.73 -2.39 -0.01 2.75 16 Total: -1.00 -77.52 396.87 -1.63 -79.15 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.61 Total: 10.05 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 9.02 Total: 22.11 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -12.01 Total: -142.16 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.05 Total: -16.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -77.52 -1.63 -79.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.569 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.47 seconds