Wall clock time and date at job start Tue Mar 31 2020 23:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.52937 * 2 1 4 4 C 1.53042 * 109.49612 * 239.91903 * 2 1 3 5 5 C 1.53045 * 109.53751 * 301.41742 * 4 2 1 6 6 C 1.53197 * 109.30997 * 298.63127 * 5 4 2 7 7 N 1.46925 * 108.88975 * 54.56499 * 6 5 4 8 8 C 1.34779 * 120.62923 * 126.46200 * 7 6 5 9 9 O 1.21279 * 120.00305 * 185.12243 * 8 7 6 10 10 C 1.50700 * 119.99703 * 5.12581 * 8 7 6 11 11 C 1.53004 * 109.46811 * 179.97438 * 10 8 7 12 12 N 1.46507 * 109.46804 * 179.97438 * 11 10 8 13 13 C 1.35315 * 125.86226 * 125.00359 * 12 11 10 14 14 C 1.35353 * 106.17233 * 179.97438 * 13 12 11 15 15 N 1.33772 * 106.49718 * 0.02562 * 14 13 12 16 16 N 1.28636 * 108.88451 * 359.72855 * 15 14 13 17 17 C 1.46955 * 118.71700 * 306.63992 * 7 6 5 18 18 H 1.09000 * 109.47029 * 293.57442 * 17 7 6 19 19 C 1.53005 * 109.71347 * 173.28979 * 17 7 6 20 20 C 1.52996 * 109.47412 * 179.31100 * 19 17 7 21 21 N 1.46501 * 109.47169 * 185.27368 * 20 19 17 22 22 C 1.36938 * 119.99689 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00325 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99665 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99853 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99800 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46884 * 90.00606 * 26 24 22 28 28 H 1.48504 * 109.46992 * 210.00003 * 26 24 22 29 29 H 1.48494 * 109.47444 * 330.00324 * 26 24 22 30 30 H 1.08992 * 109.47447 * 180.08436 * 1 2 3 31 31 H 1.09003 * 109.46465 * 300.08186 * 1 2 3 32 32 H 1.08997 * 109.47245 * 60.07843 * 1 2 3 33 33 H 1.08996 * 109.46364 * 181.39502 * 4 2 1 34 34 H 1.09002 * 109.45897 * 61.43637 * 4 2 1 35 35 H 1.08999 * 109.49402 * 178.68552 * 5 4 2 36 36 H 1.08992 * 109.50081 * 58.58429 * 5 4 2 37 37 H 1.08994 * 109.58448 * 174.42547 * 6 5 4 38 38 H 1.08997 * 109.58494 * 294.71036 * 6 5 4 39 39 H 1.09006 * 109.46926 * 299.99390 * 10 8 7 40 40 H 1.08992 * 109.47679 * 60.00042 * 10 8 7 41 41 H 1.08993 * 109.47003 * 299.99799 * 11 10 8 42 42 H 1.08999 * 109.47293 * 60.00187 * 11 10 8 43 43 H 1.07994 * 126.91451 * 0.02562 * 13 12 11 44 44 H 1.07995 * 126.75352 * 180.02562 * 14 13 12 45 45 H 1.08996 * 109.46848 * 299.31206 * 19 17 7 46 46 H 1.09001 * 109.46842 * 59.30711 * 19 17 7 47 47 H 1.09002 * 109.46905 * 305.27237 * 20 19 17 48 48 H 1.09001 * 109.47131 * 65.27174 * 20 19 17 49 49 H 0.96994 * 119.99908 * 359.97438 * 21 20 19 50 50 H 0.96999 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 1.5028 -2.1558 -1.2660 6 6 2.0139 -2.9041 -0.0308 7 7 1.6543 -2.1394 1.1711 8 6 0.9794 -2.7241 2.1806 9 8 0.6071 -2.0612 3.1255 10 6 0.6873 -4.2019 2.1353 11 6 -0.0837 -4.6081 3.3929 12 7 -0.3682 -6.0446 3.3485 13 6 -0.0397 -6.9476 4.3013 14 6 -0.4883 -8.1448 3.8567 15 7 -1.0612 -7.9186 2.6692 16 7 -0.9782 -6.6637 2.3992 17 6 2.0413 -0.7239 1.2495 18 1 3.1275 -0.6463 1.2979 19 6 1.4257 -0.0889 2.4980 20 6 1.8460 1.3798 2.5834 21 7 1.3620 1.9539 3.8413 22 6 1.6194 3.2655 4.1390 23 1 2.1796 3.8765 3.4468 24 6 1.1612 3.8094 5.3312 25 7 1.4090 5.0699 5.6176 26 14 0.1929 2.7523 6.5288 27 1 1.1282 2.0947 7.4766 28 1 -0.7588 3.6056 7.2846 29 1 -0.5602 1.7162 5.7776 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3632 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 3.1304 -0.7445 -1.2354 34 1 1.6987 -0.1958 -2.1389 35 1 1.8479 -2.6628 -2.1671 36 1 0.4132 -2.1355 -1.2541 37 1 1.5553 -3.8918 0.0137 38 1 3.0975 -3.0065 -0.0881 39 1 0.0882 -4.4269 1.2528 40 1 1.6245 -4.7563 2.0893 41 1 0.5156 -4.3831 4.2750 42 1 -1.0211 -4.0538 3.4394 43 1 0.4759 -6.7522 5.2299 44 1 -0.4009 -9.0955 4.3614 45 1 0.3392 -0.1531 2.4402 46 1 1.7743 -0.6187 3.3845 47 1 2.9332 1.4492 2.5468 48 1 1.4184 1.9294 1.7448 49 1 0.8586 1.4052 4.4628 50 1 1.0886 5.4500 6.4505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691297753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:38 Heat of formation + Delta-G solvation = 90.445015 kcal Electronic energy + Delta-G solvation = -29916.863279 eV Core-core repulsion = 25982.457381 eV Total energy + Delta-G solvation = -3934.405898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -43.55077 -41.04781 -38.21154 -35.81075 -35.31412 -33.87037 -32.93103 -31.45868 -31.24091 -31.07510 -28.77612 -26.96956 -26.18143 -24.64231 -23.87595 -22.99994 -22.22296 -21.61346 -20.98844 -20.11490 -18.68350 -18.07526 -17.46501 -16.92608 -16.56532 -16.28881 -15.80070 -15.43852 -15.29154 -14.81105 -14.56645 -14.52936 -14.23486 -14.04623 -13.64892 -13.41209 -13.29025 -13.05230 -12.93219 -12.84303 -12.50696 -12.22118 -11.97574 -11.91366 -11.76342 -11.43934 -11.40707 -11.23443 -11.19148 -10.98690 -10.85296 -10.64596 -10.47491 -10.37548 -10.25950 -10.09685 -9.72175 -9.53802 -9.04583 -8.83044 -8.66030 -7.14445 -5.71441 -3.05414 1.26631 1.91089 2.27287 2.36196 2.75966 3.43363 3.49163 3.50109 3.95763 4.09975 4.16672 4.29092 4.44754 4.58826 4.65287 4.65923 4.69750 4.77187 4.80567 4.89159 4.97500 5.00425 5.06089 5.19013 5.19266 5.37525 5.43201 5.45039 5.55090 5.57964 5.61591 5.65197 5.76541 5.82624 5.83345 5.93849 5.98089 6.09726 6.13020 6.16654 6.20841 6.34864 6.41144 6.52399 6.91530 7.00390 7.20393 7.95937 8.06211 8.18769 8.48584 9.29021 10.02095 10.23317 11.47232 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.003265 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.734370 B = 8574.517285 C =10992.556663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.105 3.895 7 N -0.602 5.602 8 C 0.517 3.483 9 O -0.520 6.520 10 C -0.156 4.156 11 C 0.129 3.871 12 N -0.290 5.290 13 C -0.046 4.046 14 C -0.055 4.055 15 N -0.274 5.274 16 N -0.087 5.087 17 C 0.157 3.843 18 H 0.074 0.926 19 C -0.120 4.120 20 C 0.151 3.849 21 N -0.754 5.754 22 C -0.240 4.240 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.937 5.937 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.275 1.275 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.191 0.809 44 H 0.189 0.811 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.362 0.638 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -25.344 -11.880 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.018 4.018 7 N -0.336 5.336 8 C 0.304 3.696 9 O -0.396 6.396 10 C -0.197 4.197 11 C 0.008 3.992 12 N -0.083 5.083 13 C -0.198 4.198 14 C -0.212 4.212 15 N -0.140 5.140 16 N -0.067 5.067 17 C 0.054 3.946 18 H 0.092 0.908 19 C -0.157 4.157 20 C 0.023 3.977 21 N -0.400 5.400 22 C -0.370 4.370 23 H 0.106 0.894 24 C -0.194 4.194 25 N -0.585 5.585 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.201 1.201 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.208 0.792 44 H 0.206 0.794 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.038 0.962 48 H 0.042 0.958 49 H 0.195 0.805 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.419 -24.593 -12.773 27.716 hybrid contribution 0.008 -0.664 1.940 2.050 sum 0.427 -25.258 -10.833 27.486 Atomic orbital electron populations 1.21879 0.94720 1.01509 1.02254 1.21576 0.96943 1.00169 0.93789 0.89187 1.21569 1.00468 0.95123 0.98146 1.21960 1.01921 0.96529 0.97149 1.21774 1.00538 0.94933 0.84509 1.48088 1.56201 1.11669 1.17610 1.20107 0.78186 0.88613 0.82696 1.90884 1.50765 1.63759 1.34193 1.21959 1.02756 0.95180 0.99759 1.21902 1.03462 0.73399 1.00406 1.47580 1.36730 1.10285 1.13739 1.23778 1.07731 0.89676 0.98565 1.23646 1.03322 0.99334 0.94922 1.75127 1.18275 1.06197 1.14379 1.78287 1.14332 1.00908 1.13153 1.21372 0.98644 0.78296 0.96275 0.90842 1.22339 1.01983 0.95381 0.96032 1.20778 0.96406 0.91266 0.89223 1.42689 1.66862 1.10635 1.19794 1.19078 1.29131 0.85866 1.02948 0.89350 1.24663 1.00890 0.95901 0.97897 1.69706 1.51299 1.12186 1.25352 0.86535 0.80304 0.79970 0.81761 1.21157 1.21832 1.20125 0.92995 0.91477 0.93013 0.91790 0.91547 0.90824 0.90928 0.89945 0.91145 0.87246 0.88228 0.86455 0.87076 0.79162 0.79353 0.90316 0.89788 0.96246 0.95810 0.80520 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.20 37.16 0.30 -1.40 16 2 C -0.11 -1.14 2.32 -90.50 -0.21 -1.35 16 3 H 0.09 1.08 6.90 -51.93 -0.36 0.72 16 4 C -0.12 -0.93 5.43 -26.69 -0.14 -1.07 16 5 C -0.14 -0.92 5.74 -26.61 -0.15 -1.07 16 6 C 0.11 0.70 6.32 -3.71 -0.02 0.68 16 7 N -0.60 -5.86 2.43 -165.20 -0.40 -6.26 16 8 C 0.52 5.45 7.61 -10.98 -0.08 5.36 16 9 O -0.52 -7.44 11.41 5.56 0.06 -7.37 16 10 C -0.16 -1.14 4.23 -27.88 -0.12 -1.25 16 11 C 0.13 0.99 5.74 -4.04 -0.02 0.97 16 12 N -0.29 -2.55 3.44 -61.26 -0.21 -2.76 16 13 C -0.05 -0.33 11.57 -17.04 -0.20 -0.52 16 14 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 15 N -0.27 -3.22 12.41 30.23 0.38 -2.84 16 16 N -0.09 -1.00 12.92 60.35 0.78 -0.22 16 17 C 0.16 1.88 2.69 -67.58 -0.18 1.70 16 18 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 19 C -0.12 -1.94 2.79 -26.73 -0.07 -2.01 16 20 C 0.15 3.00 5.79 -4.04 -0.02 2.97 16 21 N -0.75 -18.89 5.41 -59.91 -0.32 -19.21 16 22 C -0.24 -7.05 10.47 -15.06 -0.16 -7.20 16 23 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 24 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 25 N -0.94 -30.14 13.97 55.49 0.78 -29.36 16 26 Si 0.88 23.01 27.74 -169.99 -4.71 18.29 16 27 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 30 H 0.05 0.57 5.98 -51.93 -0.31 0.26 16 31 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 37 H 0.08 0.42 5.96 -51.93 -0.31 0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 0.77 7.46 -51.93 -0.39 0.38 16 40 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 41 H 0.12 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.08 1.38 5.25 -51.93 -0.27 1.11 16 46 H 0.08 1.51 6.39 -51.93 -0.33 1.17 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.47 6.88 -51.93 -0.36 0.12 16 49 H 0.36 9.05 5.53 -40.82 -0.23 8.83 16 50 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -36.60 383.67 -7.14 -43.73 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.87 Total: 5.14 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.40 Total: -4.92 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.99 Total: -60.66 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.06 Total: -7.37 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.60 -7.14 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691297753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.180 kcal (2) G-P(sol) polarization free energy of solvation -36.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds