Wall clock time and date at job start Tue Mar 31 2020 23:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47178 * 2 1 4 4 C 1.53000 * 109.47171 * 119.99748 * 2 1 3 5 5 C 1.52996 * 109.46892 * 60.00253 * 4 2 1 6 6 C 1.52995 * 109.47345 * 59.99755 * 5 4 2 7 7 C 1.53000 * 109.47326 * 299.99980 * 6 5 4 8 8 C 1.52995 * 109.46993 * 239.99948 * 2 1 3 9 9 C 1.53004 * 109.47203 * 60.00231 * 8 2 1 10 10 N 1.46503 * 109.47283 * 176.13755 * 9 8 2 11 11 C 1.36938 * 119.99941 * 175.03044 * 10 9 8 12 12 H 1.07998 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99778 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00191 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00052 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46668 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99522 * 15 13 11 18 18 H 1.48495 * 109.47080 * 239.99602 * 15 13 11 19 19 N 1.46499 * 109.47116 * 179.97438 * 8 2 1 20 20 C 1.34769 * 120.00636 * 301.89683 * 19 8 2 21 21 O 1.21285 * 119.99779 * 355.43911 * 20 19 8 22 22 C 1.50693 * 120.00413 * 175.44439 * 20 19 8 23 23 C 1.53001 * 109.47502 * 179.97438 * 22 20 19 24 24 N 1.46505 * 109.47672 * 179.97438 * 23 22 20 25 25 C 1.35311 * 125.86605 * 124.99721 * 24 23 22 26 26 C 1.35355 * 106.16998 * 180.02562 * 25 24 23 27 27 N 1.33769 * 106.49746 * 0.02562 * 26 25 24 28 28 N 1.28634 * 108.88685 * 359.73832 * 27 26 25 29 29 H 1.08997 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47352 * 300.00273 * 1 2 3 31 31 H 1.08996 * 109.47429 * 59.99640 * 1 2 3 32 32 H 1.08994 * 109.47421 * 299.99828 * 4 2 1 33 33 H 1.08997 * 109.47085 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47194 * 299.99883 * 5 4 2 35 35 H 1.08999 * 109.47109 * 179.97438 * 5 4 2 36 36 H 1.09008 * 109.47200 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47241 * 60.00131 * 6 5 4 38 38 H 1.09004 * 109.47413 * 300.00200 * 7 6 5 39 39 H 1.09004 * 109.47418 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.46976 * 296.13406 * 9 8 2 41 41 H 1.08995 * 109.47412 * 56.13279 * 9 8 2 42 42 H 0.97003 * 119.99917 * 355.02927 * 10 9 8 43 43 H 0.96999 * 119.99889 * 180.02562 * 14 13 11 44 44 H 0.97003 * 119.99715 * 121.89385 * 19 8 2 45 45 H 1.09006 * 109.47614 * 59.99988 * 22 20 19 46 46 H 1.08997 * 109.47273 * 299.99458 * 22 20 19 47 47 H 1.09002 * 109.47183 * 300.00092 * 23 22 20 48 48 H 1.08997 * 109.46995 * 59.99613 * 23 22 20 49 49 H 1.07994 * 126.91660 * 359.97438 * 25 24 23 50 50 H 1.07997 * 126.74747 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2492 6 6 2.0400 -2.8849 0.0000 7 6 1.5300 -2.1637 -1.2492 8 6 2.0399 -0.7212 -1.2492 9 6 1.5300 0.0000 -2.4985 10 7 2.0927 -0.6348 -3.6929 11 6 1.6972 -0.2235 -4.9377 12 1 0.9700 0.5686 -5.0390 13 6 2.2300 -0.8254 -6.0694 14 7 3.1159 -1.7910 -5.9459 15 14 1.6900 -0.2648 -7.7675 16 1 0.6921 0.8268 -7.6342 17 1 2.8684 0.2306 -8.5233 18 1 1.0798 -1.4067 -8.4948 19 7 3.5049 -0.7207 -1.2495 20 6 4.1785 0.4459 -1.2113 21 8 3.5746 1.4967 -1.2600 22 6 5.6819 0.4451 -1.1079 23 6 6.1923 1.8872 -1.0834 24 7 7.6539 1.8864 -0.9823 25 6 8.5074 2.5082 -1.8284 26 6 9.7527 2.2481 -1.3661 27 7 9.6020 1.4896 -0.2746 28 7 8.3464 1.2975 -0.0712 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -0.2074 2.1392 33 1 3.1299 -0.7216 1.2490 34 1 0.4399 -2.1637 1.2492 35 1 1.8937 -2.6776 2.1390 36 1 1.6763 -3.9125 -0.0002 37 1 3.1299 -2.8849 0.0000 38 1 0.4399 -2.1637 -1.2492 39 1 1.8929 -2.6778 -2.1393 40 1 0.4421 -0.0595 -2.5338 41 1 1.8356 1.0457 -2.4646 42 1 2.7456 -1.3464 -3.6019 43 1 3.4885 -2.2113 -6.7368 44 1 3.9902 -1.5602 -1.2773 45 1 6.1049 -0.0751 -1.9674 46 1 5.9828 -0.0628 -0.1917 47 1 5.8914 2.3948 -1.9999 48 1 5.7694 2.4077 -0.2242 49 1 8.2474 3.0934 -2.6980 50 1 10.6846 2.5859 -1.7947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698655719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:22 Heat of formation + Delta-G solvation = 63.792676 kcal Electronic energy + Delta-G solvation = -30615.562979 eV Core-core repulsion = 26680.001349 eV Total energy + Delta-G solvation = -3935.561630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 8.30 seconds Orbital eigenvalues (eV) -43.30047 -40.71767 -38.31404 -35.31588 -34.73303 -33.38820 -32.15535 -31.49437 -31.11129 -30.71372 -29.47317 -26.69669 -25.34194 -24.92113 -22.98543 -22.75489 -22.01127 -21.71202 -20.71980 -20.14867 -18.22180 -17.84413 -17.17028 -16.84204 -16.39283 -15.69805 -15.54774 -15.39258 -14.95601 -14.48861 -14.40687 -14.23126 -13.87566 -13.45579 -13.39482 -13.24471 -12.99013 -12.71805 -12.67968 -12.41083 -12.25624 -12.02684 -11.84840 -11.54546 -11.49138 -11.43286 -11.14487 -10.98268 -10.97161 -10.85144 -10.79149 -10.29759 -10.25206 -10.13069 -10.07018 -9.90287 -9.69333 -9.48014 -9.31592 -8.80855 -8.56298 -6.87373 -5.78461 -3.04363 1.51991 2.20268 2.50630 2.86811 3.40508 3.43291 3.47671 3.49171 4.27284 4.46430 4.57345 4.59545 4.70845 4.84813 4.87885 4.92406 4.99245 5.13501 5.18384 5.24397 5.29456 5.31504 5.47942 5.50922 5.56122 5.57855 5.66555 5.71458 5.74562 5.77891 5.80337 5.97394 6.06100 6.06689 6.14522 6.16516 6.19564 6.29228 6.42749 6.46693 6.49823 6.49890 6.56432 6.69931 6.88668 7.09156 7.70380 7.79693 8.41449 8.42742 8.47551 9.52974 10.11676 10.47053 11.44795 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.004430 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.120807 B = 6319.505504 C = 9156.529222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.183 3.817 9 C 0.140 3.860 10 N -0.726 5.726 11 C -0.229 4.229 12 H 0.069 0.931 13 C -0.016 4.016 14 N -0.936 5.936 15 Si 0.903 3.097 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.292 1.292 19 N -0.705 5.705 20 C 0.530 3.470 21 O -0.536 6.536 22 C -0.156 4.156 23 C 0.133 3.867 24 N -0.287 5.287 25 C -0.045 4.045 26 C -0.057 4.057 27 N -0.276 5.276 28 N -0.088 5.088 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.381 0.619 43 H 0.253 0.747 44 H 0.398 0.602 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.118 0.882 48 H 0.108 0.892 49 H 0.191 0.809 50 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 3.200 14.036 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.012 3.988 10 N -0.370 5.370 11 C -0.361 4.361 12 H 0.087 0.913 13 C -0.211 4.211 14 N -0.586 5.586 15 Si 0.735 3.265 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.220 1.220 19 N -0.355 5.355 20 C 0.315 3.685 21 O -0.413 6.413 22 C -0.197 4.197 23 C 0.012 3.988 24 N -0.081 5.081 25 C -0.196 4.196 26 C -0.214 4.214 27 N -0.142 5.142 28 N -0.068 5.068 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.232 0.768 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.136 0.864 48 H 0.126 0.874 49 H 0.208 0.792 50 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.026 3.170 15.157 15.778 hybrid contribution 0.185 0.258 -2.251 2.274 sum 3.212 3.429 12.906 13.734 Atomic orbital electron populations 1.21960 0.94959 1.01938 1.01724 1.21420 0.95951 1.00993 0.93491 0.89194 1.21498 1.00404 0.95414 0.97354 1.21575 1.00949 0.95746 0.97466 1.21554 1.00499 0.98871 0.94748 1.21818 1.01817 0.94031 0.98265 1.20565 0.78465 0.95810 0.95425 1.21169 0.95822 0.96547 0.85218 1.42242 1.51072 1.43461 1.00266 1.19277 1.18758 1.14407 0.83619 0.91349 1.24667 0.99796 0.99063 0.97589 1.69652 1.33096 1.27783 1.28091 0.86158 0.77673 0.77707 0.84957 1.20626 1.22028 1.21974 1.45881 1.07199 1.08107 1.74321 1.19852 0.88344 0.84317 0.76026 1.90666 1.69837 1.31194 1.49616 1.21874 0.94630 0.97108 1.06124 1.21878 0.71607 0.98619 1.06732 1.47590 1.09530 1.33033 1.17961 1.23788 0.90273 1.04898 1.00623 1.23612 0.98426 1.02757 0.96641 1.75096 1.07928 1.15300 1.15909 1.78256 0.98380 1.17358 1.12785 0.92242 0.93119 0.91986 0.92519 0.92358 0.91752 0.92646 0.92042 0.92323 0.90304 0.90170 0.95536 0.94017 0.78532 0.93757 0.76768 0.87894 0.87540 0.86419 0.87406 0.79177 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.15 37.16 0.30 -1.52 16 2 C -0.10 -1.31 2.01 -90.62 -0.18 -1.49 16 3 H 0.09 1.38 6.19 -51.92 -0.32 1.06 16 4 C -0.11 -1.22 5.29 -26.73 -0.14 -1.36 16 5 C -0.12 -1.22 5.65 -26.74 -0.15 -1.38 16 6 C -0.12 -1.32 5.75 -26.73 -0.15 -1.47 16 7 C -0.12 -1.69 4.36 -26.73 -0.12 -1.81 16 8 C 0.18 2.73 0.09 -131.82 -0.01 2.72 16 9 C 0.14 2.79 4.45 -4.04 -0.02 2.77 16 10 N -0.73 -17.47 5.12 -59.90 -0.31 -17.78 16 11 C -0.23 -6.30 9.99 -15.06 -0.15 -6.45 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 14 N -0.94 -27.44 13.06 55.49 0.72 -26.72 16 15 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 19 N -0.70 -9.83 3.44 -47.61 -0.16 -9.99 16 20 C 0.53 7.59 7.24 -10.99 -0.08 7.51 16 21 O -0.54 -9.15 12.25 5.55 0.07 -9.08 16 22 C -0.16 -1.79 5.83 -27.89 -0.16 -1.95 16 23 C 0.13 1.43 5.74 -4.04 -0.02 1.40 16 24 N -0.29 -3.37 3.44 -61.26 -0.21 -3.58 16 25 C -0.04 -0.45 11.57 -17.05 -0.20 -0.64 16 26 C -0.06 -0.61 12.05 -17.74 -0.21 -0.83 16 27 N -0.28 -3.92 12.41 30.23 0.38 -3.54 16 28 N -0.09 -1.23 12.92 60.35 0.78 -0.45 16 29 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.84 6.52 -51.93 -0.34 0.50 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 34 H 0.06 0.65 6.43 -51.92 -0.33 0.31 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.62 6.90 -51.93 -0.36 0.26 16 38 H 0.08 1.10 6.43 -51.93 -0.33 0.77 16 39 H 0.08 1.32 7.22 -51.93 -0.37 0.95 16 40 H 0.03 0.54 6.64 -51.93 -0.34 0.20 16 41 H 0.04 0.93 6.27 -51.93 -0.33 0.60 16 42 H 0.38 9.43 6.57 -40.82 -0.27 9.16 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.40 4.95 7.39 -40.82 -0.30 4.65 16 45 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 47 H 0.12 1.23 8.03 -51.93 -0.42 0.81 16 48 H 0.11 1.12 8.10 -51.93 -0.42 0.69 16 49 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -33.30 383.38 -7.09 -40.39 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.71 Total: 12.78 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.40 Total: -5.04 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 1.20 Total: -62.06 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.30 -7.09 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698655719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.183 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.30 seconds