Wall clock time and date at job start Tue Mar 31 2020 23:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47178 * 2 1 4 4 C 1.53000 * 109.47171 * 119.99748 * 2 1 3 5 5 C 1.52996 * 109.46892 * 60.00253 * 4 2 1 6 6 C 1.52995 * 109.47345 * 59.99755 * 5 4 2 7 7 C 1.53000 * 109.47326 * 299.99980 * 6 5 4 8 8 C 1.52995 * 109.46993 * 239.99948 * 2 1 3 9 9 C 1.53004 * 109.47203 * 60.00231 * 8 2 1 10 10 N 1.46503 * 109.47283 * 176.13755 * 9 8 2 11 11 C 1.36938 * 119.99941 * 175.03044 * 10 9 8 12 12 H 1.07998 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99778 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00191 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00052 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46668 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47097 * 119.99522 * 15 13 11 18 18 H 1.48495 * 109.47080 * 239.99602 * 15 13 11 19 19 N 1.46499 * 109.47116 * 179.97438 * 8 2 1 20 20 C 1.34769 * 120.00636 * 301.89683 * 19 8 2 21 21 O 1.21285 * 119.99779 * 355.43911 * 20 19 8 22 22 C 1.50693 * 120.00413 * 175.44439 * 20 19 8 23 23 C 1.53001 * 109.47502 * 179.97438 * 22 20 19 24 24 N 1.46505 * 109.47672 * 179.97438 * 23 22 20 25 25 C 1.35311 * 125.86605 * 124.99721 * 24 23 22 26 26 C 1.35355 * 106.16998 * 180.02562 * 25 24 23 27 27 N 1.33769 * 106.49746 * 0.02562 * 26 25 24 28 28 N 1.28634 * 108.88685 * 359.73832 * 27 26 25 29 29 H 1.08997 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47352 * 300.00273 * 1 2 3 31 31 H 1.08996 * 109.47429 * 59.99640 * 1 2 3 32 32 H 1.08994 * 109.47421 * 299.99828 * 4 2 1 33 33 H 1.08997 * 109.47085 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47194 * 299.99883 * 5 4 2 35 35 H 1.08999 * 109.47109 * 179.97438 * 5 4 2 36 36 H 1.09008 * 109.47200 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47241 * 60.00131 * 6 5 4 38 38 H 1.09004 * 109.47413 * 300.00200 * 7 6 5 39 39 H 1.09004 * 109.47418 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.46976 * 296.13406 * 9 8 2 41 41 H 1.08995 * 109.47412 * 56.13279 * 9 8 2 42 42 H 0.97003 * 119.99917 * 355.02927 * 10 9 8 43 43 H 0.96999 * 119.99889 * 180.02562 * 14 13 11 44 44 H 0.97003 * 119.99715 * 121.89385 * 19 8 2 45 45 H 1.09006 * 109.47614 * 59.99988 * 22 20 19 46 46 H 1.08997 * 109.47273 * 299.99458 * 22 20 19 47 47 H 1.09002 * 109.47183 * 300.00092 * 23 22 20 48 48 H 1.08997 * 109.46995 * 59.99613 * 23 22 20 49 49 H 1.07994 * 126.91660 * 359.97438 * 25 24 23 50 50 H 1.07997 * 126.74747 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2492 6 6 2.0400 -2.8849 0.0000 7 6 1.5300 -2.1637 -1.2492 8 6 2.0399 -0.7212 -1.2492 9 6 1.5300 0.0000 -2.4985 10 7 2.0927 -0.6348 -3.6929 11 6 1.6972 -0.2235 -4.9377 12 1 0.9700 0.5686 -5.0390 13 6 2.2300 -0.8254 -6.0694 14 7 3.1159 -1.7910 -5.9459 15 14 1.6900 -0.2648 -7.7675 16 1 0.6921 0.8268 -7.6342 17 1 2.8684 0.2306 -8.5233 18 1 1.0798 -1.4067 -8.4948 19 7 3.5049 -0.7207 -1.2495 20 6 4.1785 0.4459 -1.2113 21 8 3.5746 1.4967 -1.2600 22 6 5.6819 0.4451 -1.1079 23 6 6.1923 1.8872 -1.0834 24 7 7.6539 1.8864 -0.9823 25 6 8.5074 2.5082 -1.8284 26 6 9.7527 2.2481 -1.3661 27 7 9.6020 1.4896 -0.2746 28 7 8.3464 1.2975 -0.0712 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -0.2074 2.1392 33 1 3.1299 -0.7216 1.2490 34 1 0.4399 -2.1637 1.2492 35 1 1.8937 -2.6776 2.1390 36 1 1.6763 -3.9125 -0.0002 37 1 3.1299 -2.8849 0.0000 38 1 0.4399 -2.1637 -1.2492 39 1 1.8929 -2.6778 -2.1393 40 1 0.4421 -0.0595 -2.5338 41 1 1.8356 1.0457 -2.4646 42 1 2.7456 -1.3464 -3.6019 43 1 3.4885 -2.2113 -6.7368 44 1 3.9902 -1.5602 -1.2773 45 1 6.1049 -0.0751 -1.9674 46 1 5.9828 -0.0628 -0.1917 47 1 5.8914 2.3948 -1.9999 48 1 5.7694 2.4077 -0.2242 49 1 8.2474 3.0934 -2.6980 50 1 10.6846 2.5859 -1.7947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698655719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:59 Heat of formation + Delta-G solvation = 41.847043 kcal Electronic energy + Delta-G solvation = -30616.514614 eV Core-core repulsion = 26680.001349 eV Total energy + Delta-G solvation = -3936.513264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.18866 -41.89345 -39.43865 -36.50720 -36.16672 -34.77843 -33.44899 -32.78466 -32.08004 -31.86412 -30.81071 -27.89951 -26.79631 -25.99125 -24.70187 -23.61838 -23.06233 -22.72545 -21.87362 -21.27887 -19.50466 -19.05095 -18.75951 -17.83744 -17.36220 -16.95837 -16.73836 -16.54472 -16.21030 -15.78963 -15.50181 -15.35517 -15.12038 -14.81123 -14.72929 -14.50638 -14.22879 -13.91687 -13.68347 -13.64095 -13.55903 -13.10221 -12.92350 -12.86383 -12.80479 -12.65179 -12.47360 -12.43750 -12.23292 -12.05943 -11.94018 -11.88864 -11.81549 -11.27068 -11.19916 -11.10014 -11.03480 -10.90190 -10.41022 -10.32059 -9.80374 -8.91241 -7.94874 -5.20044 0.65183 1.32993 1.44575 1.45657 1.55024 1.63427 1.70575 2.32685 2.55562 3.38558 3.39611 3.59895 3.64429 3.73519 3.81436 3.83792 3.93993 4.12142 4.23961 4.24924 4.27233 4.33084 4.38345 4.45419 4.47769 4.55760 4.57930 4.64913 4.71490 4.80932 4.86037 4.86779 4.92597 4.99921 5.15435 5.19368 5.19647 5.28125 5.28601 5.28759 5.41638 5.45558 5.48728 5.52936 5.60274 5.62233 5.79841 6.28248 6.64436 7.32578 7.36032 7.51858 8.12059 8.39319 9.28233 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.004430 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.120807 B = 6319.505504 C = 9156.529222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.191 3.809 9 C 0.144 3.856 10 N -0.729 5.729 11 C -0.238 4.238 12 H 0.064 0.936 13 C -0.068 4.068 14 N -0.964 5.964 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.292 1.292 19 N -0.702 5.702 20 C 0.526 3.474 21 O -0.565 6.565 22 C -0.144 4.144 23 C 0.137 3.863 24 N -0.289 5.289 25 C -0.040 4.040 26 C -0.061 4.061 27 N -0.310 5.310 28 N -0.119 5.119 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.406 0.594 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.225 0.775 50 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 3.184 14.826 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.086 0.914 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.153 4.153 8 C 0.105 3.895 9 C 0.016 3.984 10 N -0.372 5.372 11 C -0.370 4.370 12 H 0.082 0.918 13 C -0.260 4.260 14 N -0.615 5.615 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.221 1.221 18 H -0.220 1.220 19 N -0.353 5.353 20 C 0.312 3.688 21 O -0.444 6.444 22 C -0.184 4.184 23 C 0.016 3.984 24 N -0.082 5.082 25 C -0.191 4.191 26 C -0.219 4.219 27 N -0.175 5.175 28 N -0.099 5.099 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.242 0.758 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.129 0.871 49 H 0.241 0.759 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.072 3.148 15.984 16.578 hybrid contribution 0.146 0.338 -2.530 2.557 sum 3.218 3.486 13.454 14.266 Atomic orbital electron populations 1.21948 0.94224 1.02566 1.01665 1.21334 0.96531 0.99755 0.93645 0.91422 1.21462 1.00304 0.96019 0.96323 1.21556 1.01281 0.94813 0.97555 1.21528 1.00897 0.99167 0.93477 1.21730 1.01666 0.93139 0.98796 1.20405 0.79105 0.96161 0.93863 1.21203 0.95388 0.95637 0.86153 1.42316 1.50950 1.43336 1.00629 1.19566 1.18296 1.13976 0.85196 0.91823 1.25356 1.00330 0.99556 1.00786 1.69781 1.34223 1.28861 1.28646 0.85208 0.77252 0.77339 0.80801 1.19731 1.22074 1.21968 1.45878 1.06884 1.08584 1.73949 1.20327 0.89486 0.83826 0.75171 1.90657 1.70719 1.32164 1.50878 1.21760 0.92196 0.97871 1.06604 1.21851 0.71373 0.98093 1.07105 1.47670 1.09723 1.32900 1.17946 1.24423 0.89769 1.04088 1.00841 1.24223 1.00089 1.01883 0.95707 1.75047 1.08217 1.16663 1.17608 1.78215 0.98663 1.18935 1.14054 0.91225 0.91284 0.93971 0.91213 0.92510 0.91211 0.90655 0.90824 0.91684 0.90440 0.93065 0.96022 0.96353 0.79073 0.94126 0.75832 0.88215 0.86156 0.86045 0.87052 0.75882 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.15 71.98 0.59 -2.89 16 2 C -0.09 -2.40 2.01 -10.80 -0.02 -2.43 16 3 H 0.07 2.09 6.19 -2.38 -0.01 2.08 16 4 C -0.10 -2.08 5.29 30.59 0.16 -1.92 16 5 C -0.11 -1.99 5.65 30.59 0.17 -1.82 16 6 C -0.11 -2.26 5.75 30.59 0.18 -2.09 16 7 C -0.12 -3.17 4.36 30.59 0.13 -3.03 16 8 C 0.19 5.72 0.09 3.60 0.00 5.72 16 9 C 0.14 5.86 4.45 86.38 0.38 6.25 16 10 N -0.73 -35.94 5.12 -343.44 -1.76 -37.70 16 11 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 12 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 13 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 14 N -0.96 -57.03 13.06 21.65 0.28 -56.75 16 15 Si 0.96 45.97 29.55 68.60 2.03 47.99 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 19 N -0.70 -19.56 3.44 -422.94 -1.46 -21.02 16 20 C 0.53 15.10 7.24 87.66 0.63 15.74 16 21 O -0.56 -19.63 12.25 -3.05 -0.04 -19.67 16 22 C -0.14 -3.21 5.83 29.85 0.17 -3.04 16 23 C 0.14 2.85 5.74 86.38 0.50 3.35 16 24 N -0.29 -6.49 3.44 -347.73 -1.20 -7.69 16 25 C -0.04 -0.73 11.57 83.49 0.97 0.24 16 26 C -0.06 -1.23 12.05 83.73 1.01 -0.22 16 27 N -0.31 -8.61 12.41 -58.26 -0.72 -9.33 16 28 N -0.12 -3.30 12.92 37.02 0.48 -2.82 16 29 H 0.07 1.50 4.81 -2.39 -0.01 1.49 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.15 6.52 -2.39 -0.02 1.13 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.17 7.60 -2.39 -0.02 1.16 16 34 H 0.07 1.17 6.43 -2.38 -0.02 1.16 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.06 1.23 6.90 -2.39 -0.02 1.21 16 38 H 0.08 2.12 6.43 -2.38 -0.02 2.11 16 39 H 0.05 1.71 7.22 -2.38 -0.02 1.69 16 40 H 0.02 0.91 6.64 -2.38 -0.02 0.90 16 41 H 0.02 0.85 6.27 -2.39 -0.01 0.84 16 42 H 0.38 19.08 6.57 -92.71 -0.61 18.47 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.41 9.95 7.39 -92.71 -0.68 9.27 16 45 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.12 2.37 8.12 -2.39 -0.02 2.35 16 47 H 0.12 2.45 8.03 -2.39 -0.02 2.43 16 48 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 49 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 50 H 0.22 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -72.75 383.38 3.47 -69.28 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.32 Total: 39.66 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.18 Total: -1.96 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -4.37 Total: -135.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.67 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.75 3.47 -69.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698655719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.126 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds