Wall clock time and date at job start Tue Mar 31 2020 23:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46804 * 239.99645 * 2 1 3 5 5 C 1.53003 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46923 * 60.00395 * 5 4 2 7 7 C 1.53004 * 109.46830 * 300.00175 * 6 5 4 8 8 C 1.52994 * 109.47574 * 60.00030 * 7 6 5 9 9 C 1.52994 * 109.47477 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47302 * 294.14203 * 9 8 7 11 11 C 1.36943 * 119.99885 * 183.54975 * 10 9 8 12 12 H 1.07994 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47387 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47049 * 119.99648 * 15 13 11 18 18 H 1.48498 * 109.47359 * 239.99943 * 15 13 11 19 19 N 1.46502 * 109.46936 * 59.99627 * 8 7 6 20 20 C 1.34777 * 119.99572 * 171.16614 * 19 8 7 21 21 O 1.21275 * 120.00523 * 354.00209 * 20 19 8 22 22 C 1.50705 * 119.99691 * 174.00424 * 20 19 8 23 23 C 1.52995 * 109.47113 * 179.97438 * 22 20 19 24 24 N 1.46504 * 109.47337 * 180.02562 * 23 22 20 25 25 C 1.35308 * 125.87147 * 124.99849 * 24 23 22 26 26 C 1.35348 * 106.17711 * 180.02562 * 25 24 23 27 27 N 1.33774 * 106.49757 * 359.97438 * 26 25 24 28 28 N 1.28634 * 108.87966 * 359.73694 * 27 26 25 29 29 H 1.09004 * 109.46871 * 291.99170 * 1 2 3 30 30 H 1.08999 * 109.47028 * 51.98654 * 1 2 3 31 31 H 1.08992 * 109.47256 * 171.99218 * 1 2 3 32 32 H 1.08994 * 109.47441 * 300.00320 * 4 2 1 33 33 H 1.09002 * 109.46724 * 60.00640 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00913 * 5 4 2 35 35 H 1.08999 * 109.47254 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47262 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46974 * 59.99679 * 6 5 4 38 38 H 1.09001 * 109.46936 * 299.99527 * 7 6 5 39 39 H 1.09003 * 109.46588 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46672 * 54.14041 * 9 8 7 41 41 H 1.09000 * 109.47703 * 174.13564 * 9 8 7 42 42 H 0.96997 * 120.00252 * 3.54641 * 10 9 8 43 43 H 0.97003 * 119.99988 * 179.97438 * 14 13 11 44 44 H 0.96999 * 120.00014 * 351.16721 * 19 8 7 45 45 H 1.09000 * 109.47021 * 299.99582 * 22 20 19 46 46 H 1.09000 * 109.47257 * 59.99668 * 22 20 19 47 47 H 1.09001 * 109.47366 * 299.99523 * 23 22 20 48 48 H 1.09000 * 109.47292 * 59.99737 * 23 22 20 49 49 H 1.08005 * 126.91292 * 0.02562 * 25 24 23 50 50 H 1.08000 * 126.75427 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 6 1.5295 -0.0010 2.4988 10 7 1.8988 -0.7689 3.6904 11 6 1.4842 -0.3542 4.9279 12 1 0.8854 0.5393 5.0254 13 6 1.8337 -1.0822 6.0570 14 7 2.5638 -2.1707 5.9382 15 14 1.2688 -0.5161 7.7451 16 1 0.4671 0.7264 7.6079 17 1 0.4360 -1.5754 8.3694 18 1 2.4534 -0.2496 8.5999 19 7 1.5506 -2.1027 1.2489 20 6 0.2384 -2.3530 1.4279 21 8 -0.5207 -1.4464 1.6973 22 6 -0.2855 -3.7597 1.2934 23 6 -1.7947 -3.7679 1.5441 24 7 -2.3040 -5.1354 1.4139 25 6 -3.0142 -5.8092 2.3479 26 6 -3.2759 -7.0264 1.8171 27 7 -2.7207 -7.0374 0.6000 28 7 -2.1578 -5.9002 0.3890 29 1 -0.3633 0.3849 0.9529 30 1 -0.3633 0.6329 -0.8097 31 1 -0.3633 -1.0176 -0.1431 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9337 0.3056 -1.2487 35 1 3.9333 -1.2355 -2.1392 36 1 5.1695 -1.4437 0.0007 37 1 3.7156 -2.4711 0.0000 38 1 3.9333 0.3052 1.2497 39 1 3.9328 -1.2362 2.1395 40 1 1.9764 0.9918 2.5534 41 1 0.4447 0.0914 2.4477 42 1 2.4369 -1.5712 3.6029 43 1 2.8084 -2.6793 6.7272 44 1 2.1713 -2.8369 1.1199 45 1 -0.0817 -4.1287 0.2882 46 1 0.2072 -4.4022 2.0231 47 1 -1.9981 -3.3991 2.5494 48 1 -2.2877 -3.1252 0.8146 49 1 -3.3123 -5.4484 3.3213 50 1 -3.8248 -7.8307 2.2842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698655721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:30 Heat of formation + Delta-G solvation = 60.545339 kcal Electronic energy + Delta-G solvation = -30974.579764 eV Core-core repulsion = 27038.877319 eV Total energy + Delta-G solvation = -3935.702446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.18124 -42.03420 -39.14832 -36.42538 -36.13803 -34.61501 -33.67491 -33.06658 -32.03152 -31.81839 -30.66441 -27.73810 -26.59833 -26.22951 -24.70173 -23.61497 -22.73069 -22.38135 -21.73123 -21.36132 -20.03501 -19.16388 -18.86853 -17.74854 -17.51925 -16.93871 -16.83382 -16.25316 -15.98601 -15.73154 -15.42707 -15.23814 -15.06266 -14.83780 -14.75506 -14.62352 -14.35652 -13.97292 -13.69077 -13.47386 -13.28057 -12.99899 -12.88083 -12.79965 -12.70999 -12.63028 -12.49731 -12.47584 -12.13055 -12.02219 -11.88942 -11.81766 -11.76622 -11.32632 -11.15472 -11.03452 -10.97821 -10.75186 -10.35657 -10.29204 -9.57719 -8.84000 -7.91954 -5.15656 0.65964 1.34910 1.44724 1.46120 1.55283 1.63729 1.82208 2.39396 2.57645 3.41669 3.42610 3.66316 3.68817 3.75507 3.79993 3.84430 3.95531 4.13281 4.21544 4.25305 4.30513 4.33619 4.40509 4.47700 4.54017 4.57833 4.62249 4.66930 4.72551 4.79931 4.88503 4.94601 4.98371 5.06619 5.15925 5.22691 5.25218 5.28979 5.30082 5.37446 5.41390 5.47857 5.52656 5.57726 5.63146 5.77762 5.83716 6.31525 6.73855 7.38784 7.45508 7.52409 8.16828 8.43388 9.31309 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007197 B = 0.004918 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.446532 B = 5692.562121 C = 8579.319394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.104 4.104 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.190 3.810 9 C 0.133 3.867 10 N -0.726 5.726 11 C -0.229 4.229 12 H 0.062 0.938 13 C -0.070 4.070 14 N -0.965 5.965 15 Si 0.962 3.038 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.295 1.295 19 N -0.701 5.701 20 C 0.520 3.480 21 O -0.542 6.542 22 C -0.142 4.142 23 C 0.137 3.863 24 N -0.288 5.288 25 C -0.041 4.041 26 C -0.061 4.061 27 N -0.310 5.310 28 N -0.118 5.118 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.002 0.998 41 H 0.054 0.946 42 H 0.375 0.625 43 H 0.248 0.752 44 H 0.404 0.596 45 H 0.118 0.882 46 H 0.096 0.904 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.222 0.778 50 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -2.986 -14.468 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.154 4.154 8 C 0.104 3.896 9 C 0.006 3.994 10 N -0.368 5.368 11 C -0.362 4.362 12 H 0.080 0.920 13 C -0.262 4.262 14 N -0.617 5.617 15 Si 0.793 3.207 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.222 1.222 19 N -0.353 5.353 20 C 0.306 3.694 21 O -0.420 6.420 22 C -0.183 4.183 23 C 0.016 3.984 24 N -0.081 5.081 25 C -0.193 4.193 26 C -0.218 4.218 27 N -0.175 5.175 28 N -0.097 5.097 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.072 0.928 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.240 0.760 45 H 0.136 0.864 46 H 0.115 0.885 47 H 0.136 0.864 48 H 0.130 0.870 49 H 0.239 0.761 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.055 -2.301 -15.627 16.307 hybrid contribution -0.092 -0.059 2.561 2.563 sum -4.146 -2.360 -13.066 13.909 Atomic orbital electron populations 1.22254 0.94606 1.01636 1.00682 1.21444 0.96160 0.99187 0.93958 0.90896 1.21510 0.95833 1.00526 0.96276 1.21524 0.95014 1.00961 0.97627 1.21531 1.00850 0.99258 0.93423 1.21717 0.92823 1.01984 0.98852 1.20421 0.93786 0.81534 0.93904 1.21409 0.99387 0.92733 0.85895 1.42258 1.62966 1.30259 1.01341 1.19532 1.24761 1.06170 0.85714 0.92048 1.25309 1.02001 0.98243 1.00644 1.69780 1.44096 1.19185 1.28649 0.85228 0.77136 0.77370 0.81003 1.19874 1.22060 1.22219 1.45740 1.07880 1.08451 1.73263 1.20105 0.82792 0.90026 0.76485 1.90732 1.57925 1.46362 1.47031 1.21745 0.94977 0.95406 1.06192 1.21853 0.94135 0.75790 1.06619 1.47670 1.35135 1.14265 1.11068 1.24401 1.01151 0.94282 0.99437 1.24206 1.05502 0.99394 0.92737 1.75046 1.11912 1.12762 1.17801 1.78203 1.21620 0.98109 1.11800 0.92734 0.94115 0.92532 0.91965 0.91224 0.91833 0.90460 0.90890 0.91500 0.91001 0.93102 0.98062 0.92812 0.79212 0.94271 0.75950 0.86381 0.88548 0.86369 0.87038 0.76137 0.76408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 7.29 71.98 0.52 -3.16 16 2 C -0.09 -2.17 2.07 -10.79 -0.02 -2.20 16 3 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.10 -1.98 5.04 30.60 0.15 -1.83 16 5 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 6 C -0.11 -2.20 5.75 30.60 0.18 -2.02 16 7 C -0.12 -3.14 4.70 30.59 0.14 -3.00 16 8 C 0.19 5.56 0.32 3.60 0.00 5.56 16 9 C 0.13 5.35 4.44 86.38 0.38 5.74 16 10 N -0.73 -35.56 5.17 -343.46 -1.77 -37.33 16 11 C -0.23 -12.79 9.99 84.03 0.84 -11.95 16 12 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 13 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 14 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 15 Si 0.96 46.16 29.55 68.60 2.03 48.19 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 N -0.70 -18.94 3.58 -422.93 -1.51 -20.45 16 20 C 0.52 14.78 5.88 87.66 0.52 15.30 16 21 O -0.54 -18.45 9.44 -3.02 -0.03 -18.48 16 22 C -0.14 -3.24 5.83 29.85 0.17 -3.06 16 23 C 0.14 2.98 5.74 86.38 0.50 3.48 16 24 N -0.29 -6.69 3.44 -347.74 -1.20 -7.89 16 25 C -0.04 -0.80 11.57 83.49 0.97 0.17 16 26 C -0.06 -1.25 12.05 83.73 1.01 -0.25 16 27 N -0.31 -8.73 12.41 -58.26 -0.72 -9.45 16 28 N -0.12 -3.31 12.92 37.02 0.48 -2.83 16 29 H 0.05 1.82 5.04 -2.38 -0.01 1.81 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.55 5.32 -2.39 -0.01 1.54 16 32 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.21 6.70 -2.39 -0.02 1.19 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.68 7.17 -2.39 -0.02 1.66 16 40 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.05 2.37 4.25 -2.39 -0.01 2.36 16 42 H 0.37 19.04 6.49 -92.71 -0.60 18.44 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.40 9.43 7.07 -92.71 -0.66 8.77 16 45 H 0.12 2.35 8.12 -2.39 -0.02 2.33 16 46 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.12 2.60 8.02 -2.39 -0.02 2.58 16 48 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 49 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 50 H 0.22 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -71.41 382.41 3.27 -68.14 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.30 Total: 39.50 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.01 Total: -2.45 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -4.44 Total: -134.90 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.03 Total: -18.48 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.41 3.27 -68.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698655721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.684 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds