Wall clock time and date at job start Tue Mar 31 2020 23:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.52144 * 2 1 4 4 C 1.53038 * 109.49483 * 239.92093 * 2 1 3 5 5 C 1.53039 * 109.53722 * 301.40839 * 4 2 1 6 6 C 1.53192 * 109.31574 * 298.63582 * 5 4 2 7 7 N 1.46930 * 108.77294 * 54.63623 * 6 5 4 8 8 C 1.34774 * 120.62837 * 126.36766 * 7 6 5 9 9 O 1.21596 * 119.99650 * 187.54124 * 8 7 6 10 10 C 1.47528 * 120.00220 * 7.54327 * 8 7 6 11 11 C 1.36591 * 125.77110 * 187.24205 * 10 8 7 12 12 N 1.34810 * 106.84091 * 179.89675 * 11 10 8 13 13 C 1.46501 * 126.59733 * 180.13494 * 12 11 10 14 14 N 1.40209 * 106.81031 * 0.35846 * 12 11 10 15 15 N 1.28763 * 108.36861 * 359.76935 * 14 12 11 16 16 C 1.46921 * 118.73611 * 306.39108 * 7 6 5 17 17 H 1.08996 * 109.58937 * 293.67556 * 16 7 6 18 18 C 1.53011 * 109.58298 * 173.39611 * 16 7 6 19 19 C 1.52994 * 109.46844 * 178.39645 * 18 16 7 20 20 C 1.53002 * 109.47328 * 176.79106 * 19 18 16 21 21 N 1.46499 * 109.47639 * 179.97438 * 20 19 18 22 22 C 1.36930 * 120.00049 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00090 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00072 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99815 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99984 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47028 * 60.00011 * 26 24 22 28 28 H 1.48504 * 109.46679 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46880 * 299.99781 * 26 24 22 30 30 H 1.09002 * 109.46818 * 299.91553 * 1 2 3 31 31 H 1.08997 * 109.46929 * 59.92143 * 1 2 3 32 32 H 1.08997 * 109.46666 * 179.91836 * 1 2 3 33 33 H 1.09004 * 109.45628 * 181.39536 * 4 2 1 34 34 H 1.08999 * 109.46289 * 61.43436 * 4 2 1 35 35 H 1.09011 * 109.49576 * 178.68725 * 5 4 2 36 36 H 1.09000 * 109.52359 * 58.60649 * 5 4 2 37 37 H 1.08993 * 109.58906 * 294.84931 * 6 5 4 38 38 H 1.09001 * 109.58497 * 174.41903 * 6 5 4 39 39 H 1.08004 * 126.58030 * 0.04504 * 11 10 8 40 40 H 1.08997 * 109.47066 * 270.24302 * 13 12 11 41 41 H 1.09001 * 109.47294 * 30.24314 * 13 12 11 42 42 H 1.08999 * 109.47677 * 150.24331 * 13 12 11 43 43 H 1.08999 * 109.47020 * 58.39861 * 18 16 7 44 44 H 1.08996 * 109.46978 * 298.39313 * 18 16 7 45 45 H 1.09000 * 109.47922 * 56.79114 * 19 18 16 46 46 H 1.09006 * 109.47592 * 296.78762 * 19 18 16 47 47 H 1.08998 * 109.47096 * 59.99384 * 20 19 18 48 48 H 1.09006 * 109.46503 * 300.00322 * 20 19 18 49 49 H 0.96996 * 119.99661 * 0.02562 * 21 20 19 50 50 H 0.97006 * 120.00238 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 1.5031 -2.1557 -1.2660 6 6 2.0141 -2.9040 -0.0308 7 7 1.6517 -2.1381 1.1696 8 6 0.9742 -2.7219 2.1779 9 8 0.5605 -2.0487 3.1022 10 6 0.7344 -4.1774 2.1602 11 6 -0.0503 -4.8681 3.0393 12 7 -0.0009 -6.1643 2.6719 13 6 -0.6901 -7.2827 3.3202 14 7 0.8411 -6.2368 1.5532 15 7 1.2558 -5.0488 1.2797 16 6 2.0414 -0.7238 1.2495 17 1 3.1274 -0.6464 1.3005 18 6 1.4229 -0.0912 2.4979 19 6 1.8628 1.3706 2.6001 20 6 1.1813 2.0255 3.8032 21 7 1.6029 3.4250 3.9015 22 6 1.1185 4.2170 4.9080 23 1 0.4260 3.8097 5.6298 24 6 1.5177 5.5433 5.0008 25 7 2.3613 6.0397 4.1210 26 14 0.8574 6.6234 6.3744 27 1 1.2367 6.0420 7.6871 28 1 1.4326 7.9871 6.2516 29 1 -0.6224 6.7002 6.2759 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3632 -1.0277 -0.0015 33 1 3.1305 -0.7444 -1.2353 34 1 1.6988 -0.1958 -2.1389 35 1 1.8482 -2.6628 -2.1671 36 1 0.4133 -2.1360 -1.2543 37 1 3.0980 -3.0043 -0.0868 38 1 1.5555 -3.8918 0.0137 39 1 -0.6059 -4.4548 3.8682 40 1 -0.0518 -7.7007 4.0987 41 1 -1.6201 -6.9281 3.7645 42 1 -0.9111 -8.0516 2.5799 43 1 1.7558 -0.6335 3.3829 44 1 0.3362 -0.1396 2.4294 45 1 1.5801 1.8997 1.6900 46 1 2.9446 1.4166 2.7259 47 1 1.4639 1.4964 4.7133 48 1 0.0995 1.9794 3.6774 49 1 2.2246 3.7908 3.2530 50 1 2.6405 6.9664 4.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707173869.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:17 Heat of formation + Delta-G solvation = 69.643793 kcal Electronic energy + Delta-G solvation = -29819.150328 eV Core-core repulsion = 25883.842421 eV Total energy + Delta-G solvation = -3935.307907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.28821 -41.58668 -38.75228 -37.27399 -35.88236 -35.09714 -34.26793 -33.12477 -31.93877 -30.99528 -29.04930 -28.11613 -27.24248 -26.02164 -24.67906 -24.20795 -23.41287 -22.80558 -21.78706 -21.30233 -19.64398 -19.11750 -18.30722 -17.36824 -17.28051 -16.92368 -16.74012 -16.55413 -16.18470 -15.61914 -15.51766 -15.30186 -15.16029 -15.00496 -14.90722 -14.51653 -14.19078 -14.08151 -13.93715 -13.63320 -13.38982 -13.21917 -13.13838 -12.86634 -12.74247 -12.71742 -12.48051 -12.45544 -12.18508 -12.05059 -11.90067 -11.76133 -11.63669 -11.46871 -11.32701 -11.23305 -10.95179 -10.87679 -10.31783 -10.18930 -9.45823 -9.00710 -7.94962 -5.24436 0.15983 0.60154 1.17873 1.45979 1.50477 1.56653 1.95216 2.23741 2.56428 3.14018 3.37482 3.41408 3.65757 3.82740 3.89303 3.95933 3.99352 4.02357 4.14723 4.23385 4.27597 4.31692 4.37970 4.43005 4.58308 4.62546 4.65057 4.68936 4.70694 4.76244 4.78788 4.83797 4.94400 5.00430 5.07987 5.09737 5.15125 5.22631 5.28119 5.30961 5.35165 5.44870 5.47087 5.49669 5.53312 5.59685 5.82116 6.27348 6.41440 6.85494 7.18004 7.32866 8.08728 8.34543 9.28568 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002539 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.494020 B =11023.668293 C =12525.915420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.085 3.915 7 N -0.589 5.589 8 C 0.593 3.407 9 O -0.553 6.553 10 C -0.123 4.123 11 C 0.105 3.895 12 N -0.349 5.349 13 C 0.074 3.926 14 N -0.093 5.093 15 N -0.219 5.219 16 C 0.155 3.845 17 H 0.077 0.923 18 C -0.087 4.087 19 C -0.117 4.117 20 C 0.158 3.842 21 N -0.747 5.747 22 C -0.251 4.251 23 H 0.072 0.928 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.978 3.022 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.010 0.990 48 H 0.012 0.988 49 H 0.374 0.626 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -31.393 -9.726 33.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.168 4.168 6 C -0.037 4.037 7 N -0.320 5.320 8 C 0.380 3.620 9 O -0.432 6.432 10 C -0.263 4.263 11 C -0.053 4.053 12 N -0.134 5.134 13 C -0.064 4.064 14 N -0.073 5.073 15 N -0.092 5.092 16 C 0.053 3.947 17 H 0.095 0.905 18 C -0.125 4.125 19 C -0.156 4.156 20 C 0.032 3.968 21 N -0.389 5.389 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.806 3.194 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.028 0.972 48 H 0.030 0.970 49 H 0.206 0.794 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.369 -32.040 -10.111 34.024 hybrid contribution -0.369 1.582 1.319 2.092 sum -5.738 -30.459 -8.792 32.217 Atomic orbital electron populations 1.21813 0.95190 1.01345 1.01396 1.21541 0.96461 0.99707 0.94547 0.90152 1.21558 1.00907 0.95570 0.96889 1.21939 1.01075 0.95817 0.97951 1.22582 1.01274 0.97095 0.82751 1.47937 1.54740 1.11020 1.18301 1.17173 0.77990 0.84647 0.82154 1.90905 1.52134 1.62861 1.37261 1.21585 1.08712 0.95499 1.00486 1.23791 0.97989 0.83755 0.99745 1.50670 1.32838 1.08214 1.21701 1.22717 0.98353 0.86210 0.99149 1.81914 1.08633 1.14707 1.02027 1.74364 1.17667 0.97009 1.20156 1.21330 0.98581 0.79197 0.95620 0.90541 1.21885 1.01229 0.92453 0.96916 1.21763 0.99784 0.96464 0.97555 1.20681 0.95992 0.83972 0.96190 1.42603 1.54889 1.07805 1.33643 1.19620 1.20766 0.92654 1.05227 0.91041 1.25633 1.00809 0.98575 1.01906 1.69817 1.38440 1.14643 1.39100 0.85153 0.77907 0.77524 0.78827 1.20346 1.21709 1.20293 0.93891 0.92004 0.92902 0.91101 0.90690 0.88871 0.92009 0.91021 0.85893 0.75206 0.87558 0.85480 0.87059 0.91556 0.91241 0.91772 0.92613 0.97226 0.96981 0.79398 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.21 71.98 0.59 -2.79 16 2 C -0.10 -2.37 2.35 -10.71 -0.03 -2.39 16 3 H 0.08 1.98 6.73 -2.39 -0.02 1.96 16 4 C -0.11 -1.95 5.43 30.62 0.17 -1.78 16 5 C -0.13 -2.10 5.74 30.67 0.18 -1.93 16 6 C 0.09 1.64 6.07 86.36 0.52 2.16 16 7 N -0.59 -14.14 2.41 -798.76 -1.93 -16.07 16 8 C 0.59 15.65 7.59 86.69 0.66 16.30 16 9 O -0.55 -17.47 12.29 -4.02 -0.05 -17.52 16 10 C -0.12 -2.67 6.68 40.82 0.27 -2.40 16 11 C 0.11 1.55 11.32 83.85 0.95 2.50 16 12 N -0.35 -4.23 4.03 -368.59 -1.49 -5.72 16 13 C 0.07 0.07 11.51 127.77 1.47 1.54 16 14 N -0.09 -1.78 13.78 37.02 0.51 -1.27 16 15 N -0.22 -4.75 8.81 -49.99 -0.44 -5.19 16 16 C 0.16 4.01 2.70 44.98 0.12 4.13 16 17 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 18 C -0.09 -2.78 2.70 30.60 0.08 -2.70 16 19 C -0.12 -4.29 5.11 30.59 0.16 -4.13 16 20 C 0.16 7.26 6.26 86.38 0.54 7.80 16 21 N -0.75 -41.66 5.60 -343.45 -1.92 -43.58 16 22 C -0.25 -15.09 9.99 84.04 0.84 -14.25 16 23 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 26 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 29 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 30 H 0.04 1.22 6.30 -2.39 -0.02 1.21 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.26 5.97 -2.39 -0.01 1.24 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.10 6.33 -2.39 -0.02 1.08 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 2.47 4.15 -31.00 -0.13 2.35 16 39 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 43 H 0.07 2.36 6.39 -2.39 -0.02 2.34 16 44 H 0.07 2.40 5.16 -2.39 -0.01 2.38 16 45 H 0.06 2.30 6.47 -2.39 -0.02 2.28 16 46 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.37 21.74 7.67 -92.71 -0.71 21.02 16 50 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -78.34 385.09 4.11 -74.23 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.13 Total: 28.58 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.99 Total: -2.12 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -4.98 Total: -133.22 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -78.34 4.11 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707173869.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.870 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds