Wall clock time and date at job start Wed Apr 1 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.38729 * 2 1 4 4 C 1.54384 * 110.34283 * 122.23054 * 2 1 3 5 5 N 1.48143 * 104.62065 * 142.73967 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21288 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99985 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47263 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47222 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47222 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.35348 * 126.91050 * 85.00086 * 12 11 10 14 14 N 1.33772 * 106.49541 * 179.97438 * 13 12 11 15 15 N 1.28633 * 108.88611 * 359.97438 * 14 13 12 16 16 N 1.28717 * 110.17635 * 359.76292 * 15 14 13 17 17 H 0.96998 * 125.86287 * 180.24048 * 16 15 14 18 18 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 19 19 C 1.54281 * 110.34372 * 237.76803 * 2 1 3 20 20 H 1.09005 * 110.34282 * 122.14983 * 19 2 1 21 21 C 1.53004 * 110.34432 * 359.97438 * 19 2 1 22 22 N 1.46499 * 109.47198 * 175.00023 * 21 19 2 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47201 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47080 * 120.00466 * 27 25 23 30 30 H 1.48506 * 109.47018 * 240.00565 * 27 25 23 31 31 H 1.09002 * 109.46810 * 182.22987 * 1 2 3 32 32 H 1.09001 * 109.46892 * 302.23152 * 1 2 3 33 33 H 1.09001 * 109.47136 * 62.23259 * 1 2 3 34 34 H 1.09008 * 110.40676 * 261.52406 * 4 2 1 35 35 H 1.09001 * 110.40797 * 23.95001 * 4 2 1 36 36 H 1.08998 * 109.47260 * 300.00375 * 8 6 5 37 37 H 1.08998 * 109.47196 * 60.00402 * 8 6 5 38 38 H 1.08998 * 109.47207 * 300.00308 * 9 8 6 39 39 H 1.09006 * 109.47108 * 59.99978 * 9 8 6 40 40 H 1.08997 * 109.47140 * 299.99621 * 10 9 8 41 41 H 1.08998 * 109.47363 * 60.00225 * 10 9 8 42 42 H 1.08998 * 109.47207 * 300.00128 * 11 10 9 43 43 H 1.09003 * 109.47331 * 60.00285 * 11 10 9 44 44 H 1.08002 * 126.75160 * 359.94301 * 13 12 11 45 45 H 1.08998 * 110.40618 * 280.80042 * 18 5 4 46 46 H 1.08998 * 110.40357 * 158.37108 * 18 5 4 47 47 H 1.09009 * 109.46730 * 54.99810 * 21 19 2 48 48 H 1.08998 * 109.46846 * 295.00355 * 21 19 2 49 49 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 50 50 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7227 6 6 4.4425 -1.6660 1.3545 7 8 5.3370 -2.2740 0.8056 8 6 4.6463 -1.1166 2.7429 9 6 6.0564 -1.4616 3.2261 10 6 6.2630 -0.9045 4.6359 11 6 7.6734 -1.2489 5.1188 12 6 7.8771 -0.6996 6.5073 13 6 7.5306 -1.2909 7.6744 14 7 7.8974 -0.4514 8.6491 15 7 8.4359 0.5904 8.1207 16 7 8.4491 0.4812 6.8382 17 1 8.8055 1.1343 6.2159 18 6 2.8802 -1.9422 -0.6314 19 6 2.0664 -0.7715 -1.2237 20 1 2.7081 -0.1282 -1.8258 21 6 0.9062 -1.3041 -2.0671 22 7 1.4329 -1.9285 -3.2832 23 6 0.5742 -2.4744 -4.1996 24 1 -0.4911 -2.4486 -4.0236 25 6 1.0729 -3.0610 -5.3546 26 7 2.3712 -3.0928 -5.5688 27 14 -0.0985 -3.8063 -6.6043 28 1 -1.4966 -3.6427 -6.1314 29 1 0.0660 -3.1171 -7.9094 30 1 0.2040 -5.2512 -6.7660 31 1 -0.3633 -1.0269 0.0400 32 1 -0.3633 0.5481 0.8693 33 1 -0.3633 0.4788 -0.9093 34 1 2.3401 -0.0794 2.0206 35 1 1.3235 -1.4860 1.5793 36 1 4.5228 -0.0338 2.7270 37 1 3.9127 -1.5561 3.4188 38 1 6.1803 -2.5444 3.2419 39 1 6.7898 -1.0219 2.5501 40 1 6.1391 0.1783 4.6204 41 1 5.5297 -1.3446 5.3116 42 1 7.7979 -2.3316 5.1341 43 1 8.4065 -0.8084 4.4430 44 1 7.0517 -2.2514 7.7949 45 1 2.2640 -2.8389 -0.5664 46 1 3.7673 -2.1324 -1.2354 47 1 0.2461 -0.4801 -2.3383 48 1 0.3480 -2.0427 -1.4918 49 1 2.3897 -1.9514 -3.4413 50 1 2.7196 -3.5030 -6.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724604287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:39 Heat of formation + Delta-G solvation = 52.327107 kcal Electronic energy + Delta-G solvation = -27885.100470 eV Core-core repulsion = 23949.041655 eV Total energy + Delta-G solvation = -3936.058815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.73211 -40.16751 -38.25538 -36.29517 -34.67121 -33.80325 -33.01514 -32.68997 -31.18987 -29.88070 -28.80369 -26.73237 -25.70224 -24.73507 -23.43261 -23.23149 -22.23919 -22.02286 -21.50913 -19.24661 -18.89321 -18.60617 -17.29520 -16.80669 -16.52053 -16.37816 -15.77881 -15.49372 -15.17702 -14.93282 -14.65474 -14.59393 -14.00196 -13.81816 -13.62580 -13.22128 -13.14141 -12.83928 -12.55951 -12.38529 -12.15743 -12.06860 -11.97688 -11.91355 -11.77196 -11.69496 -11.57740 -11.27016 -11.04133 -10.99749 -10.98107 -10.88404 -10.51937 -10.45669 -10.21010 -9.94782 -9.81393 -9.69548 -9.57336 -8.88173 -8.66780 -6.93030 -5.77224 -3.06433 1.09761 2.11985 2.28393 2.64530 2.96091 3.42479 3.47757 3.50332 3.90420 4.15626 4.34061 4.40034 4.44169 4.55850 4.60012 4.65791 4.79041 4.85031 4.91237 4.96214 5.02938 5.06662 5.22181 5.27728 5.34588 5.38616 5.40835 5.47026 5.49439 5.56422 5.59333 5.69010 5.75562 5.79706 5.82604 5.92128 5.98123 6.05739 6.11430 6.15809 6.29947 6.36351 6.39520 6.49752 6.72169 6.82486 7.62002 7.68962 8.00693 8.18388 8.41185 9.52380 10.10036 10.43972 11.45504 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.001631 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.399959 B =17159.216270 C =17898.303614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.105 3.895 5 N -0.625 5.625 6 C 0.528 3.472 7 O -0.542 6.542 8 C -0.135 4.135 9 C -0.105 4.105 10 C -0.115 4.115 11 C -0.050 4.050 12 C -0.004 4.004 13 C -0.049 4.049 14 N -0.266 5.266 15 N -0.086 5.086 16 N -0.391 5.391 17 H 0.447 0.553 18 C 0.115 3.885 19 C -0.105 4.105 20 H 0.080 0.920 21 C 0.162 3.838 22 N -0.734 5.734 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.191 0.809 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.027 0.973 48 H 0.023 0.977 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 8.250 24.320 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.019 4.019 5 N -0.359 5.359 6 C 0.317 3.683 7 O -0.419 6.419 8 C -0.175 4.175 9 C -0.143 4.143 10 C -0.153 4.153 11 C -0.090 4.090 12 C -0.138 4.138 13 C -0.206 4.206 14 N -0.133 5.133 15 N -0.066 5.066 16 N -0.111 5.111 17 H 0.293 0.707 18 C -0.007 4.007 19 C -0.125 4.125 20 H 0.098 0.902 21 C 0.035 3.965 22 N -0.379 5.379 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.208 0.792 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.044 0.956 48 H 0.040 0.960 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.392 8.634 25.347 27.779 hybrid contribution -0.448 -0.608 -2.199 2.325 sum 6.944 8.027 23.148 25.465 Atomic orbital electron populations 1.21902 0.93896 1.02656 1.01906 1.22057 0.96563 0.99118 0.94108 0.90449 1.22527 0.87031 0.95454 0.96848 1.49119 1.12811 1.55637 1.18333 1.20278 0.80458 0.79901 0.87626 1.90732 1.41227 1.42069 1.67889 1.21633 0.99540 1.02443 0.93876 1.21347 0.95496 1.02463 0.94982 1.21623 0.95453 1.01343 0.96895 1.20229 0.98533 1.02287 0.87935 1.22409 1.03085 0.88860 0.99449 1.23461 1.06629 1.02681 0.87846 1.75112 1.11789 0.98894 1.27531 1.78312 1.19356 1.19410 0.89496 1.45160 1.41514 1.16468 1.08002 0.70714 1.22436 0.99600 0.96985 0.81676 1.22334 0.98158 0.96332 0.95676 0.90177 1.20853 0.92899 0.95056 0.87735 1.42430 1.06743 1.69072 1.19619 1.19248 0.89894 1.29637 0.98371 0.91138 1.24752 0.95839 1.01784 0.98585 1.69675 1.10568 1.50037 1.27708 0.86131 0.79897 0.78703 0.81527 1.20565 1.21899 1.21873 0.91737 0.93128 0.91348 0.90720 0.90793 0.89165 0.88997 0.90620 0.90888 0.91844 0.90967 0.88298 0.90065 0.79208 0.90551 0.89817 0.95568 0.95964 0.78315 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.94 37.16 0.29 -1.19 16 2 C -0.10 -1.08 3.66 -89.22 -0.33 -1.41 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.10 1.01 6.46 -2.41 -0.02 0.99 16 5 N -0.63 -8.10 3.32 -169.31 -0.56 -8.67 16 6 C 0.53 6.91 7.91 -10.99 -0.09 6.82 16 7 O -0.54 -9.42 16.25 5.55 0.09 -9.33 16 8 C -0.13 -1.05 4.68 -27.88 -0.13 -1.18 16 9 C -0.10 -0.72 4.50 -26.74 -0.12 -0.84 16 10 C -0.11 -0.49 5.20 -26.74 -0.14 -0.63 16 11 C -0.05 -0.18 5.78 -27.88 -0.16 -0.35 16 12 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 13 C -0.05 -0.36 11.99 -17.74 -0.21 -0.57 16 14 N -0.27 -2.77 12.41 30.23 0.38 -2.39 16 15 N -0.09 -0.81 13.38 60.35 0.81 -0.01 16 16 N -0.39 -2.27 6.98 33.54 0.23 -2.04 16 17 H 0.45 1.01 8.96 -190.40 -1.71 -0.70 16 18 C 0.11 1.84 6.41 -2.41 -0.02 1.82 16 19 C -0.11 -1.60 3.10 -89.22 -0.28 -1.87 16 20 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 21 C 0.16 3.02 4.40 -4.04 -0.02 3.01 16 22 N -0.73 -18.10 5.48 -59.90 -0.33 -18.43 16 23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 27 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 31 H 0.06 0.70 6.90 -51.93 -0.36 0.34 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.77 6.67 -51.93 -0.35 0.42 16 34 H 0.07 0.52 7.30 -51.92 -0.38 0.14 16 35 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 36 H 0.09 0.56 7.95 -51.93 -0.41 0.15 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.08 1.30 7.75 -51.93 -0.40 0.89 16 46 H 0.08 1.56 7.88 -51.93 -0.41 1.15 16 47 H 0.03 0.49 6.49 -51.92 -0.34 0.16 16 48 H 0.02 0.42 6.93 -51.93 -0.36 0.06 16 49 H 0.38 10.08 7.61 -40.82 -0.31 9.77 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -36.08 403.63 -9.21 -45.29 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -9.62 Total: 2.90 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.99 Total: -3.20 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 1.25 Total: -58.98 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.08 -9.21 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724604287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.615 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds